View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12657_high_2 (Length: 538)
Name: NF12657_high_2
Description: NF12657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12657_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 244; Significance: 1e-135; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 318
Target Start/End: Original strand, 49254633 - 49254965
Alignment:
| Q |
1 |
tattccaatttcaataataatctcaacttccaccaacgtattcaaatcccaatattaatgta-------------ttcaattttctgggctagaaaatat |
87 |
Q |
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| T |
49254633 |
tattccaatttcaataataatctcaacttccaccaacgtattcaaatcc-aatattaatgtaactttgtcacatattcaattttctgggctagaaaatat |
49254731 |
T |
|
| Q |
88 |
ggataaaggtttgttagagaaagacacagagggtg---gttcaagaagcataacatggcgtgtattttttcaagaggtgaaagatgtttgttttctagca |
184 |
Q |
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| T |
49254732 |
ggaaaaaggtttgttagagaaagacagagagggtgctggttcaagaagcataacatggggtgtattttttcaagaggtgaaagatgtttgttttctagca |
49254831 |
T |
|
| Q |
185 |
ttgcctatgattagtgtaactttgtcacaatattttctacaaattatttcaatgatgatggttggtcatttgtgtaaactttctctttctagcacagcta |
284 |
Q |
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| T |
49254832 |
ttgcctatgattagtgtaactttgtcacaatattttctacaaattatttcaatgatgatggttggtcatttgggtaaactttctctttctagcacagcta |
49254931 |
T |
|
| Q |
285 |
ttgctatctctctttgtgctgtctctggcttcag |
318 |
Q |
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| T |
49254932 |
ttgctatctctctctgtgttgtctctggcttcag |
49254965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 355 - 523
Target Start/End: Original strand, 49255932 - 49256100
Alignment:
| Q |
355 |
atcatttcagctttgagtggtggtcatttgagctcctagtctttctttctggtcttcttccaaatccacagcttgaaacttctgttttatccatatggta |
454 |
Q |
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| T |
49255932 |
atcatttcagctttgagtggtggtcatttgagctcctagtctttctttctggtcttcttccaaatccacagcttgaaacttctgttttatccatatggta |
49256031 |
T |
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| Q |
455 |
taactttccctagtgtttagttttacgcatagatgactttgcgtgtatgaaagttgtattgtaatggtt |
523 |
Q |
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| T |
49256032 |
taactttccctagtgtttagttttacgcatagatgactttgcgtgtatgaaagttgtattgtaatggtt |
49256100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 163; E-Value: 8e-87
Query Start/End: Original strand, 76 - 318
Target Start/End: Original strand, 49266985 - 49267227
Alignment:
| Q |
76 |
gctagaaaatatggataaaggtttgttagagaaagacacagagggtggttcaagaagcataacatggcgtgtattttttcaagaggtgaaagatgtttgt |
175 |
Q |
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| T |
49266985 |
gctagaaaatatggaaaagggtttgttagagaaagacagagaaggtgattcaagaagcataacatggggtgtattttttcaagaggtgaaagatgtttgt |
49267084 |
T |
|
| Q |
176 |
tttctagcattgcctatgattagtgtaactttgtcacaatattttctacaaattatttcaatgatgatggttggtcatttgtgtaaactttctctttcta |
275 |
Q |
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| T |
49267085 |
tttctagctctgcctatgatcgccgtcactctgtcacaatattttctacaaattatttcaatgataatggttggtcgtttgggtaaacttgctctttcta |
49267184 |
T |
|
| Q |
276 |
gcacagctattgctatctctctttgtgctgtctctggcttcag |
318 |
Q |
| |
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| T |
49267185 |
gcacagctattgctatctctctctgtggtgtctctggcttcag |
49267227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 168 - 348
Target Start/End: Complemental strand, 49274761 - 49274577
Alignment:
| Q |
168 |
atgtttgttttctagcattgcctatgattagtgtaactttgtcacaatattttctacaaattatttcaatgatgatggttggtcatttgtgtaaactttc |
267 |
Q |
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||||| |||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
49274761 |
atgttggttttctagctttgcctatgactagtgtaactttgtcacaatattttctacaaattatttcaatgatgatggttggtcatttgggtaaactttc |
49274662 |
T |
|
| Q |
268 |
tctttctagcacagctat----tgctatctctctttgtgctgtctctggcttcagccgttcagcgttcttgcaagtcttcttttg |
348 |
Q |
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| T |
49274661 |
tctttctagcacagctattgcttgctatctctctttgtgctgtctctggcttcagccgttcagcgttcttgcaagtcttcttttg |
49274577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 132 - 318
Target Start/End: Original strand, 49271447 - 49271633
Alignment:
| Q |
132 |
gcataacatggcgtgtattttttcaagaggtgaaagatgtttgttttctagcattgcctatgattagtgtaactttgtcacaatattttctacaaattat |
231 |
Q |
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||||| ||||| |||| ||| |||||||||| |||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49271447 |
gcatatcatggggtgtgtttgttcaagaggtagaagatgttggttttctagctttgcctatgattagtgtaactttgtcacaatattttctacaaattat |
49271546 |
T |
|
| Q |
232 |
ttcaatgatgatggttggtcatttgtgtaaactttctctttctagcacagctattgctatctctctttgtgctgtctctggcttcag |
318 |
Q |
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||||||||||||||||||||||||| |||||||| ||||||||| ||||||||||||||||||||| | || ||||||||||||||| |
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| T |
49271547 |
ttcaatgatgatggttggtcatttgggtaaacttgctctttctaccacagctattgctatctctctctatggtgtctctggcttcag |
49271633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 359 - 457
Target Start/End: Original strand, 49268906 - 49269004
Alignment:
| Q |
359 |
tttcagctttgagtggtggtcatttgagctcctagtctttctttctggtcttcttccaaatccacagcttgaaacttctgttttatccatatggtataa |
457 |
Q |
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||||||| ||||||||||||||||||| |||||| || |||||||||||||||| ||||||||||||||||||||||| || ||||||||||||||||| |
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| T |
49268906 |
tttcagccttgagtggtggtcatttgaactcctaatccttctttctggtcttctaccaaatccacagcttgaaacttcagtcttatccatatggtataa |
49269004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 358 - 392
Target Start/End: Original strand, 49273704 - 49273738
Alignment:
| Q |
358 |
atttcagctttgagtggtggtcatttgagctccta |
392 |
Q |
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| T |
49273704 |
atttcagctttgagtggtggtcatttgagctccta |
49273738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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