View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12657_high_6 (Length: 348)
Name: NF12657_high_6
Description: NF12657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12657_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 11 - 331
Target Start/End: Complemental strand, 10111397 - 10111076
Alignment:
| Q |
11 |
actgtgtgttgatcaatagaacaacaaaaatttgaccaatagagacatacctatgaaaaatatataattgcaagtaaattccataaacataaactaggta |
110 |
Q |
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| T |
10111397 |
actgtgtgttgatcaatagaacaacaaaaatttgaacaatagagacatatatatgaaaaatatataattgcaagtaaattacataaacataaactaggta |
10111298 |
T |
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| Q |
111 |
ataataggtagcattacaccatacaacacaccatagattaattaatcaaaacaacaatgaagaaactaaattaaatggaatataatcctcaatcaaaatt |
210 |
Q |
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| T |
10111297 |
ataataggtagcattacaccatacaatacaccatagattaattaatcaaaacaacaatgaagaaactaaattaaatggaatataatcctcaatcaaaatt |
10111198 |
T |
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| Q |
211 |
cttgccgatac-aaaattgacaaagtaattgtgcattttttattgnnnnnnnnnnnnnnnnnnnnnnccataacaatttataacctttcaacctagcgat |
309 |
Q |
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| T |
10111197 |
cttgtcgatacaaaaattgacaaagtaattgtgaattttttattgaaaaacaaaaagtgtaaaaaaaccataacaatttataacctttcaacctagcgat |
10111098 |
T |
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| Q |
310 |
caggccttcccatcatcgatgt |
331 |
Q |
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| T |
10111097 |
caggccttcccatcattgatgt |
10111076 |
T |
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