View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12657_high_7 (Length: 312)

Name: NF12657_high_7
Description: NF12657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12657_high_7
NF12657_high_7
[»] chr6 (1 HSPs)
chr6 (47-147)||(10578326-10578426)
[»] chr2 (2 HSPs)
chr2 (47-188)||(31267267-31267413)
chr2 (93-155)||(36658860-36658922)
[»] chr4 (4 HSPs)
chr4 (47-155)||(48666137-48666246)
chr4 (122-188)||(49420388-49420454)
chr4 (100-161)||(12579695-12579756)
chr4 (93-155)||(45892339-45892397)
[»] scaffold0219 (2 HSPs)
scaffold0219 (48-155)||(5558-5666)
scaffold0219 (110-155)||(2265-2310)
[»] chr7 (2 HSPs)
chr7 (93-163)||(12120394-12120464)
chr7 (47-155)||(23773829-23773938)
[»] scaffold0527 (2 HSPs)
scaffold0527 (47-155)||(2965-3076)
scaffold0527 (47-155)||(11028-11139)


Alignment Details
Target: chr6 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 47 - 147
Target Start/End: Complemental strand, 10578426 - 10578326
Alignment:
Q  47 ctacgtgggttcgtggattgtctgtggtagtggttgtttagggttattctcttttattaccacttttgtattaaattgttgggttttgcttttgtggttt 146  Q
    |||||||| ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  10578426 ctacgtggattcgtggattgtccgtggtagtggttatttagggttattctcttttattaccacttttgtattaaattgttggattttgcttttgtggttt 10578327  T
Q  147 a 147  Q
    |    
T  10578326 a 10578326  T

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Target: chr2 (Bit Score: 81; Significance: 4e-38; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 47 - 188
Target Start/End: Original strand, 31267267 - 31267413
Alignment:
Q  47 ctacgtgggttcgt-ggattgtctgtggtagtggttgtttagggttattctcttttattaccacttttgta-ttaa---attgttgggttttgcttttgt 141  Q
    |||||| ||||||| ||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| ||||   |||||||||||||||||| ||    
T  31267267 ctacgttggttcgttggattgtctgtggtagtggttgtttagggttgttctcttttattgccacttttgtacttaatatattgttgggttttgctttagt 31267366  T
Q  142 ggtttactgggtcatgtccttgctccttagtcttgtatttccttctc 188  Q
    |||||||||||||| |||||||||||| | ||||||| || ||||||    
T  31267367 ggtttactgggtcaagtccttgctcctcaatcttgtacttgcttctc 31267413  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 93 - 155
Target Start/End: Original strand, 36658860 - 36658922
Alignment:
Q  93 ttctcttttattaccacttttgtattaaattgttgggttttgcttttgtggtttactgggtca 155  Q
    |||| ||||||||||| |||| |||| |||||||||||||| ||||||||||||||| |||||    
T  36658860 ttcttttttattaccatttttatattgaattgttgggttttacttttgtggtttactaggtca 36658922  T

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Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 47 - 155
Target Start/End: Original strand, 48666137 - 48666246
Alignment:
Q  47 ctacgtgggttcg-tggattgtctgtggtagtggttgtttagggttattctcttttattaccacttttgtattaaattgttgggttttgcttttgtggtt 145  Q
    ||||||||||||| || |||||  |||||| |||||||| |||  | |||||||||||||| | ||||||| | |||||||| |||||||||||||||||    
T  48666137 ctacgtgggttcgctgaattgtacgtggtaatggttgttaaggactgttctcttttattacaatttttgtactgaattgttgagttttgcttttgtggtt 48666236  T
Q  146 tactgggtca 155  Q
    ||||||||||    
T  48666237 tactgggtca 48666246  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 122 - 188
Target Start/End: Complemental strand, 49420454 - 49420388
Alignment:
Q  122 ttgttgggttttgcttttgtggtttactgggtcatgtccttgctccttagtcttgtatttccttctc 188  Q
    ||||| |||||||||||||||||||| ||||||| |||||||||||| | |||| ||||| ||||||    
T  49420454 ttgttaggttttgcttttgtggtttaatgggtcaggtccttgctcctcaatcttatatttgcttctc 49420388  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 100 - 161
Target Start/End: Original strand, 12579695 - 12579756
Alignment:
Q  100 ttattaccacttttgtattaaattgttgggttttgcttttgtggtttactgggtcatgtcct 161  Q
    ||||||||| |||||||  ||||||||||||||||||||||||||| | ||||||| |||||    
T  12579695 ttattaccatttttgtaccaaattgttgggttttgcttttgtggttcattgggtcaggtcct 12579756  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 93 - 155
Target Start/End: Complemental strand, 45892397 - 45892339
Alignment:
Q  93 ttctcttttattaccacttttgtattaaattgttgggttttgcttttgtggtttactgggtca 155  Q
    |||||||||||||||| ||||||| |    ||||| |||||||||||||||||||||||||||    
T  45892397 ttctcttttattaccatttttgtact----tgttgagttttgcttttgtggtttactgggtca 45892339  T

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Target: scaffold0219 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: scaffold0219
Description:

Target: scaffold0219; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 48 - 155
Target Start/End: Complemental strand, 5666 - 5558
Alignment:
Q  48 tacgtgggttcg-tggattgtctgtggtagtggttgtttagggttattctcttttattaccacttttgtattaaattgttgggttttgcttttgtggttt 146  Q
    |||||||||||| ||||||||  |||||| ||||||||||||  | |||||| |||||| || ||||||| | |||||||||||||||||||||||||||    
T  5666 tacgtgggttcgctggattgtacgtggtaatggttgtttaggactgttctctattattatcatttttgtactgaattgttgggttttgcttttgtggttt 5567  T
Q  147 actgggtca 155  Q
     | ||||||    
T  5566 tcggggtca 5558  T

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Target: scaffold0219; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 155
Target Start/End: Complemental strand, 2310 - 2265
Alignment:
Q  110 ttttgtattaaattgttgggttttgcttttgtggtttactgggtca 155  Q
    ||||||| | ||| ||||||||||||||||||||||||| ||||||    
T  2310 ttttgtactgaatagttgggttttgcttttgtggtttacggggtca 2265  T

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Target: chr7 (Bit Score: 47; Significance: 8e-18; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 93 - 163
Target Start/End: Original strand, 12120394 - 12120464
Alignment:
Q  93 ttctcttttattaccacttttgtattaaattgttgggttttgcttttgtggtttactgggtcatgtccttg 163  Q
    |||||||||||||| |||||| || |||||| ||||||||||||||||||||||||||| ||| |||||||    
T  12120394 ttctcttttattacaacttttatactaaattattgggttttgcttttgtggtttactggttcaggtccttg 12120464  T

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Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 47 - 155
Target Start/End: Original strand, 23773829 - 23773938
Alignment:
Q  47 ctacgtgggttcg-tggattgtctgtggtagtggttgtttagggttattctcttttattaccacttttgtattaaattgttgggttttgcttttgtggtt 145  Q
    ||||||||||||| |||||||   ||| || ||||||||||||  | || ||| ||||||||  |||||||||||||| |||||||||||||||||||||    
T  23773829 ctacgtgggttcgctggattgcacgtgataatggttgtttaggactgttatctcttattaccctttttgtattaaattattgggttttgcttttgtggtt 23773928  T
Q  146 tactgggtca 155  Q
    |||| |||||    
T  23773929 tactaggtca 23773938  T

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Target: scaffold0527 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: scaffold0527
Description:

Target: scaffold0527; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 47 - 155
Target Start/End: Complemental strand, 3076 - 2965
Alignment:
Q  47 ctacgtgggttcg-tggattgtctgtggtagtggttgtttagggttattctcttttattaccac--ttttgtattaaattgttgggttttgcttttgtgg 143  Q
    ||||||||||||| ||||||||   ||||| |||||||||| | || |||||| |||||||||   ||||||| | ||||||| ||||||||||||||||    
T  3076 ctacgtgggttcgctggattgtacatggtaatggttgtttaagattgttctctcttattaccatatttttgtactgaattgtttggttttgcttttgtgg 2977  T
Q  144 tttactgggtca 155  Q
    ||||||||||||    
T  2976 tttactgggtca 2965  T

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Target: scaffold0527; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 47 - 155
Target Start/End: Complemental strand, 11139 - 11028
Alignment:
Q  47 ctacgtgggttcg-tggattgtctgtggtagtggttgtttagggttattctcttttattaccac--ttttgtattaaattgttgggttttgcttttgtgg 143  Q
    ||||||||||||| ||||||||   ||||| |||||||||| | || |||||| |||||||||   ||||||| | ||||||| ||||||||||||||||    
T  11139 ctacgtgggttcgctggattgtacatggtaatggttgtttaagattgttctctcttattaccatatttttgtactgaattgtttggttttgcttttgtgg 11040  T
Q  144 tttactgggtca 155  Q
    ||||||||||||    
T  11039 tttactgggtca 11028  T

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