View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12657_high_9 (Length: 249)
Name: NF12657_high_9
Description: NF12657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12657_high_9 |
 | |
|
| [»] scaffold0011 (1 HSPs) |
| | |
|
| [»] scaffold0517 (1 HSPs) |
| | |
|
| [»] scaffold0166 (1 HSPs) |
| | |
|
| [»] scaffold0165 (1 HSPs) |
| | |
|
| [»] scaffold0014 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 178; Significance: 4e-96; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 10111696 - 10111936
Alignment:
| Q |
1 |
tgtggtcatggtaaggattgtgagttaaataaaaacattaggaaaccttttgtaaaagatttgatttgtttgcctttgaaggagatcaatgtcatcttag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| ||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10111696 |
tgtggtcatggtaaggattgtgagttaattaaagacagcagtaaaccttttgtaaaagatttgatttgtttgcctttgaaggagatcaatgtcatcttag |
10111795 |
T |
|
| Q |
101 |
ttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgaggcgctgcaccagaattaagcatgatagcaactactaattt |
200 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| ||||| |||||| ||||| ||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
10111796 |
tttttggtactctgtttagcacatagctaacagtcaatgaaattt-tccccaccaatgaggcgctgcatcagaattaagcatgatagcaactactaattt |
10111894 |
T |
|
| Q |
201 |
ggtaaaggttcgattttttctttcggctttaccgttcatctc |
242 |
Q |
| |
|
| |||||||| ||||||||||||| ||||||||||||||||| |
|
|
| T |
10111895 |
gataaaggtttgattttttctttccgctttaccgttcatctc |
10111936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 95 - 239
Target Start/End: Original strand, 40002117 - 40002261
Alignment:
| Q |
95 |
tcttagttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgaggcgctgcaccagaattaagcatgatagcaactac |
194 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| |||| ||||||||||||| ||||| |||||||||||||| || ||||||||||| | |||||||| |
|
|
| T |
40002117 |
tctttgttttgggtactctgtttagcacatagcaaacagtcaataaaatttctccccaccaatgaggcgctgctccggaattaagcattgttgcaactac |
40002216 |
T |
|
| Q |
195 |
taatttggtaaaggttcgattttttctttcggctttaccgttcat |
239 |
Q |
| |
|
||||| ||||||||||| |||||||||||| |||||||||||||| |
|
|
| T |
40002217 |
taattcggtaaaggttctattttttctttccgctttaccgttcat |
40002261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 95 - 239
Target Start/End: Original strand, 13698386 - 13698530
Alignment:
| Q |
95 |
tcttagttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgaggcgctgcaccagaattaagcatgatagcaactac |
194 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| |||| ||||||||||||| ||||| |||||||||||||| || ||||||||||| | |||||||| |
|
|
| T |
13698386 |
tctttgttttgggtactctgtttagcacatagcaaacagtcaataaaatttctccccaccaatgaggcgctgctccggaattaagcattgttgcaactac |
13698485 |
T |
|
| Q |
195 |
taatttggtaaaggttcgattttttctttcggctttaccgttcat |
239 |
Q |
| |
|
||||| |||||| |||| |||||||||||| |||||||||||||| |
|
|
| T |
13698486 |
taattcggtaaacgttctattttttctttccgctttaccgttcat |
13698530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 95 - 239
Target Start/End: Complemental strand, 21302052 - 21301908
Alignment:
| Q |
95 |
tcttagttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgaggcgctgcaccagaattaagcatgatagcaactac |
194 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| |||| ||||||||||||| ||||| |||||||||||||| || ||||||||||| | |||||||| |
|
|
| T |
21302052 |
tctttgttttgggtactctgtttagcacatagcaaacagtcaataaaatttctccccaccaatgaggcgctgctccggaattaagcattgttgcaactac |
21301953 |
T |
|
| Q |
195 |
taatttggtaaaggttcgattttttctttcggctttaccgttcat |
239 |
Q |
| |
|
||||| |||||| |||| |||||||||||| |||||||||||||| |
|
|
| T |
21301952 |
taattcggtaaacgttctattttttctttccgctttaccgttcat |
21301908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 95 - 239
Target Start/End: Original strand, 54346251 - 54346395
Alignment:
| Q |
95 |
tcttagttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgaggcgctgcaccagaattaagcatgatagcaactac |
194 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| |||| ||||||||||||| ||||| |||||||||||||| || ||||||||||| | |||||||| |
|
|
| T |
54346251 |
tctttgttttgggtactctgtttagcacatagcaaacagtcaataaaatttctccccaccaatgaggcgctgctccggaattaagcattgttgcaactac |
54346350 |
T |
|
| Q |
195 |
taatttggtaaaggttcgattttttctttcggctttaccgttcat |
239 |
Q |
| |
|
||||| |||||| |||| |||||||||||| |||||||||||||| |
|
|
| T |
54346351 |
taattcggtaaacgttctattttttctttccgctttaccgttcat |
54346395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 95 - 239
Target Start/End: Complemental strand, 8982504 - 8982360
Alignment:
| Q |
95 |
tcttagttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgaggcgctgcaccagaattaagcatgatagcaactac |
194 |
Q |
| |
|
|||| |||||||||||||||||||| ||||||| |||| ||||||||||||| ||||| |||||||||||||| | ||||||||||| | |||||||| |
|
|
| T |
8982504 |
tctttgttttgggtactctgtttagaacatagcaaacagtcaataaaatttctccccaccaatgaggcgctgcttcggaattaagcattgttgcaactac |
8982405 |
T |
|
| Q |
195 |
taatttggtaaaggttcgattttttctttcggctttaccgttcat |
239 |
Q |
| |
|
||||| |||||| |||| |||||||||||| |||||||||||||| |
|
|
| T |
8982404 |
taattcggtaaacgttctattttttctttccgctttaccgttcat |
8982360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 101 - 239
Target Start/End: Original strand, 36357195 - 36357333
Alignment:
| Q |
101 |
ttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgaggcgctgcaccagaattaagcatgatagcaactactaattt |
200 |
Q |
| |
|
||||||| ||||||||||||||||||| |||| ||||||||||||| ||||| |||||||||||||| | ||||||||||| | ||||||||||||| |
|
|
| T |
36357195 |
ttttgggaactctgtttagcacatagcaaacagtcaataaaatttctccccaccaatgaggcgctgctctggaattaagcattgttgcaactactaattc |
36357294 |
T |
|
| Q |
201 |
ggtaaaggttcgattttttctttcggctttaccgttcat |
239 |
Q |
| |
|
|||||| |||| |||||||||||| |||||||||||||| |
|
|
| T |
36357295 |
ggtaaacgttctattttttctttccgctttaccgttcat |
36357333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0011 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: scaffold0011
Description:
Target: scaffold0011; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 95 - 242
Target Start/End: Original strand, 4914 - 5061
Alignment:
| Q |
95 |
tcttagttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgaggcgctgcaccagaattaagcatgatagcaactac |
194 |
Q |
| |
|
||||||| |||||||||| ||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4914 |
tcttagtcttgggtactccgtttagcacatagctaacagtcaataaaatttccccccacaaatgaggcgctgcaccagaattaagcatgatagcaactac |
5013 |
T |
|
| Q |
195 |
taatttggtaaaggttcgattttttctttcggctttaccgttcatctc |
242 |
Q |
| |
|
||||| |||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
5014 |
taattcggtaaaggttcgattttttctttccgctttaccgttcatctc |
5061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 120; Significance: 2e-61; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 95 - 242
Target Start/End: Complemental strand, 13584936 - 13584789
Alignment:
| Q |
95 |
tcttagttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgaggcgctgcaccagaattaagcatgatagcaactac |
194 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13584936 |
tcttcgttttgggtactctgtttagcacatagctaacagtcaataaaatttccccccaccaatgaggcgctgcaccagaattaagcatgatagcaactac |
13584837 |
T |
|
| Q |
195 |
taatttggtaaaggttcgattttttctttcggctttaccgttcatctc |
242 |
Q |
| |
|
|| || ||||||||||||||| |||||||| ||||||||||||||||| |
|
|
| T |
13584836 |
tagttcggtaaaggttcgattctttctttccgctttaccgttcatctc |
13584789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 95 - 239
Target Start/End: Original strand, 41856467 - 41856612
Alignment:
| Q |
95 |
tcttagttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgaggcgctgcaccagaattaagcatgatagcaactac |
194 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| |||| ||||||||||||| ||||| |||||||||||||| |||||||||||||| | |||||||| |
|
|
| T |
41856467 |
tctttgttttgggtactctgtttagcacatagcaaacagtcaataaaatttctccccaccaatgaggcgctgctccagaattaagcattgttgcaactac |
41856566 |
T |
|
| Q |
195 |
taatttggtaaaggttcga-ttttttctttcggctttaccgttcat |
239 |
Q |
| |
|
||||| |||||| |||| | ||||||||||| |||||||||||||| |
|
|
| T |
41856567 |
taattcggtaaacgttctatttttttctttccgctttaccgttcat |
41856612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 95 - 239
Target Start/End: Complemental strand, 24773576 - 24773432
Alignment:
| Q |
95 |
tcttagttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgaggcgctgcaccagaattaagcatgatagcaactac |
194 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| |||| ||||||||||||| ||||| |||||||||||||| || ||||||||||| | |||||||| |
|
|
| T |
24773576 |
tctttgttttgggtactctgtttagcacatagcaaacagtcaataaaatttctccccaccaatgaggcgctgctccggaattaagcattgttgcaactac |
24773477 |
T |
|
| Q |
195 |
taatttggtaaaggttcgattttttctttcggctttaccgttcat |
239 |
Q |
| |
|
||||| |||||| |||| ||||||||||| |||||||||||||| |
|
|
| T |
24773476 |
taattcggtaaacgttctattttttcttttcgctttaccgttcat |
24773432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 95 - 239
Target Start/End: Original strand, 42022860 - 42023005
Alignment:
| Q |
95 |
tcttagttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgaggcgctgcaccagaattaagcatgatagcaactac |
194 |
Q |
| |
|
|||| |||||||||||| ||||||||||||||| |||| ||||||||||||| ||||| |||||||||||||| || ||||||||||| | |||||||| |
|
|
| T |
42022860 |
tctttgttttgggtactgtgtttagcacatagcaaacagtcaataaaatttctccccaccaatgaggcgctgctccggaattaagcattgttgcaactac |
42022959 |
T |
|
| Q |
195 |
taatttggtaaaggttcga-ttttttctttcggctttaccgttcat |
239 |
Q |
| |
|
||||| |||||| |||| | ||||||||||| |||||||||||||| |
|
|
| T |
42022960 |
taattcggtaaacgttctatttttttctttccgctttaccgttcat |
42023005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 95 - 239
Target Start/End: Original strand, 17507950 - 17508093
Alignment:
| Q |
95 |
tcttagttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgaggcgctgcaccagaattaagcatgatagcaactac |
194 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| |||| ||||||||||||| ||||| |||||||||||||| || |||||||||| | |||||||| |
|
|
| T |
17507950 |
tctttgttttgggtactctgtttagcacatagcaaacagtcaataaaatttctccccaccaatgaggcgctgctccgaaattaagcattgttgcaactac |
17508049 |
T |
|
| Q |
195 |
taatttggtaaaggttcgattttttctttcggctttaccgttcat |
239 |
Q |
| |
|
||| | |||||| |||| | |||||||||| |||||||||||||| |
|
|
| T |
17508050 |
taactcggtaaacgttcta-tttttctttccgctttaccgttcat |
17508093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 112; Significance: 1e-56; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 95 - 242
Target Start/End: Original strand, 19433322 - 19433469
Alignment:
| Q |
95 |
tcttagttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgaggcgctgcaccagaattaagcatgatagcaactac |
194 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| |||||||||| |||||||||||||||||| ||||||||||| |
|
|
| T |
19433322 |
tcttagttttgggtactctgtttagcacatagctaacagtcaataaaattttcccccaccaatgaggcgttgcaccagaattaagcattatagcaactac |
19433421 |
T |
|
| Q |
195 |
taatttggtaaaggttcgattttttctttcggctttaccgttcatctc |
242 |
Q |
| |
|
||||| |||||| |||||||| |||||||| ||||||||||||||||| |
|
|
| T |
19433422 |
taattcggtaaaagttcgattctttctttccgctttaccgttcatctc |
19433469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 95 - 242
Target Start/End: Original strand, 19569472 - 19569619
Alignment:
| Q |
95 |
tcttagttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgaggcgctgcaccagaattaagcatgatagcaactac |
194 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| |||||||||| |||||||||||||||||| ||||||||||| |
|
|
| T |
19569472 |
tcttagttttgggtactctgtttagcacatagctaacagtcaataaaattttcccccaccaatgaggcgttgcaccagaattaagcattatagcaactac |
19569571 |
T |
|
| Q |
195 |
taatttggtaaaggttcgattttttctttcggctttaccgttcatctc |
242 |
Q |
| |
|
||||| |||||| |||||||| |||||||| ||||||||||||||||| |
|
|
| T |
19569572 |
taattcggtaaaagttcgattctttctttccgctttaccgttcatctc |
19569619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 95 - 239
Target Start/End: Complemental strand, 21646301 - 21646157
Alignment:
| Q |
95 |
tcttagttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgaggcgctgcaccagaattaagcatgatagcaactac |
194 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| |||| ||||||||||||| ||||| |||||||||||||| || ||||||||||| | |||||||| |
|
|
| T |
21646301 |
tctttgttttgggtactctgtttagcacatagcaaacagtcaataaaatttctccccaccaatgaggcgctgctccggaattaagcattgttgcaactac |
21646202 |
T |
|
| Q |
195 |
taatttggtaaaggttcgattttttctttcggctttaccgttcat |
239 |
Q |
| |
|
||||| |||||| |||| |||||||||||| |||||||||||||| |
|
|
| T |
21646201 |
taattcggtaaacgttctattttttctttccgctttaccgttcat |
21646157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 95 - 239
Target Start/End: Original strand, 32013574 - 32013718
Alignment:
| Q |
95 |
tcttagttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgaggcgctgcaccagaattaagcatgatagcaactac |
194 |
Q |
| |
|
|||| |||||||| ||||||||||||||||||| |||| ||||||||||||| ||||| |||||||||||||| || ||||||||||| | |||||||| |
|
|
| T |
32013574 |
tctttgttttgggaactctgtttagcacatagcaaacagtcaataaaatttctccccaccaatgaggcgctgctccggaattaagcattgttgcaactac |
32013673 |
T |
|
| Q |
195 |
taatttggtaaaggttcgattttttctttcggctttaccgttcat |
239 |
Q |
| |
|
||||| |||||| |||| |||||||||||| |||||||||||||| |
|
|
| T |
32013674 |
taattcggtaaatgttctattttttctttccgctttaccgttcat |
32013718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 111; Significance: 4e-56; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 95 - 241
Target Start/End: Complemental strand, 17285064 - 17284919
Alignment:
| Q |
95 |
tcttagttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgaggcgctgcaccagaattaagcatgatagcaactac |
194 |
Q |
| |
|
||||||||||||| | |||||||||||||||||||||| ||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
17285064 |
tcttagttttgggcagtctgtttagcacatagctaacagtcaataaaatttccccc-accaatgaggcgctgcaccagaattaagcatgatagcacctac |
17284966 |
T |
|
| Q |
195 |
taatttggtaaaggttcgattttttctttcggctttaccgttcatct |
241 |
Q |
| |
|
||||| |||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
17284965 |
taattcggtaaaggttcgattttttctttccgctttaccgttcatct |
17284919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 95 - 242
Target Start/End: Original strand, 10491015 - 10491162
Alignment:
| Q |
95 |
tcttagttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgaggcgctgcaccagaattaagcatgatagcaactac |
194 |
Q |
| |
|
|||||||||||||| ||| |||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
10491015 |
tcttagttttgggtgctccatttagcacatagctaacagtcaataaaatttccccccaccaatgaggcgctgcaccataattaagcatgatagcaactac |
10491114 |
T |
|
| Q |
195 |
taatttggtaaaggttcgattttttctttcggctttaccgttcatctc |
242 |
Q |
| |
|
||||| |||||| |||||||||||||||| |||||| |||||||||| |
|
|
| T |
10491115 |
taattcggtaaaagttcgattttttcttttcgctttatcgttcatctc |
10491162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 95 - 239
Target Start/End: Complemental strand, 22700465 - 22700321
Alignment:
| Q |
95 |
tcttagttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgaggcgctgcaccagaattaagcatgatagcaactac |
194 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| |||| ||||||||||||| ||||| |||||||||||||| || ||||||||||| | |||||||| |
|
|
| T |
22700465 |
tctttgttttgggtactctgtttagcacatagcaaacagtcaataaaatttctccccaccaatgaggcgctgctccggaattaagcattgttgcaactac |
22700366 |
T |
|
| Q |
195 |
taatttggtaaaggttcgattttttctttcggctttaccgttcat |
239 |
Q |
| |
|
||||| |||||| |||| |||||||||||| |||||||||||||| |
|
|
| T |
22700365 |
taattcggtaaacgttctattttttctttccgctttaccgttcat |
22700321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0517 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: scaffold0517
Description:
Target: scaffold0517; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 95 - 239
Target Start/End: Original strand, 1439 - 1583
Alignment:
| Q |
95 |
tcttagttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgaggcgctgcaccagaattaagcatgatagcaactac |
194 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| |||| ||||||||||||| ||||| |||||||||||||| || ||||||||||| | |||||||| |
|
|
| T |
1439 |
tctttgttttgggtactctgtttagcacatagcaaacagtcaataaaatttctccccaccaatgaggcgctgctccggaattaagcattgttgcaactac |
1538 |
T |
|
| Q |
195 |
taatttggtaaaggttcgattttttctttcggctttaccgttcat |
239 |
Q |
| |
|
||||| |||||| |||| |||||||||||| |||||||||||||| |
|
|
| T |
1539 |
taattcggtaaacgttctattttttctttccgctttaccgttcat |
1583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0166 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: scaffold0166
Description:
Target: scaffold0166; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 95 - 239
Target Start/End: Complemental strand, 15960 - 15816
Alignment:
| Q |
95 |
tcttagttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgaggcgctgcaccagaattaagcatgatagcaactac |
194 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| |||| ||||||||||||| ||||| |||||||||||||| || ||||||||||| | |||||||| |
|
|
| T |
15960 |
tctttgttttgggtactctgtttagcacatagcaaacagtcaataaaatttctccccaccaatgaggcgctgctccggaattaagcattgttgcaactac |
15861 |
T |
|
| Q |
195 |
taatttggtaaaggttcgattttttctttcggctttaccgttcat |
239 |
Q |
| |
|
||||| |||||| |||| |||||||||||| |||||||||||||| |
|
|
| T |
15860 |
taattcggtaaacgttctattttttctttccgctttaccgttcat |
15816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0165 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: scaffold0165
Description:
Target: scaffold0165; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 95 - 239
Target Start/End: Original strand, 14861 - 15005
Alignment:
| Q |
95 |
tcttagttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgaggcgctgcaccagaattaagcatgatagcaactac |
194 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| |||| ||||||||||||| ||||| |||||||||||||| || ||||||||||| | |||||||| |
|
|
| T |
14861 |
tctttgttttgggtactctgtttagcacatagcaaacagtcaataaaatttctccccaccaatgaggcgctgctccggaattaagcattgttgcaactac |
14960 |
T |
|
| Q |
195 |
taatttggtaaaggttcgattttttctttcggctttaccgttcat |
239 |
Q |
| |
|
||||| |||||| |||| |||||||||||| |||||||||||||| |
|
|
| T |
14961 |
taattcggtaaacgttctattttttctttccgctttaccgttcat |
15005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0014 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: scaffold0014
Description:
Target: scaffold0014; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 95 - 239
Target Start/End: Original strand, 29421 - 29565
Alignment:
| Q |
95 |
tcttagttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgaggcgctgcaccagaattaagcatgatagcaactac |
194 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| |||| ||||||||||||| ||||| |||||||||||||| || ||||||||||| | |||||||| |
|
|
| T |
29421 |
tctttgttttgggtactctgtttagcacatagcaaacagtcaataaaatttctccccaccaatgaggcgctgctccggaattaagcattgttgcaactac |
29520 |
T |
|
| Q |
195 |
taatttggtaaaggttcgattttttctttcggctttaccgttcat |
239 |
Q |
| |
|
||||| |||||| |||| |||||||||||| |||||||||||||| |
|
|
| T |
29521 |
taattcggtaaacgttctattttttctttccgctttaccgttcat |
29565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 89; Significance: 5e-43; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 95 - 239
Target Start/End: Original strand, 33241051 - 33241195
Alignment:
| Q |
95 |
tcttagttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgaggcgctgcaccagaattaagcatgatagcaactac |
194 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| |||| ||||||||||||| ||||| |||||||||||||| || ||||||||||| | |||||||| |
|
|
| T |
33241051 |
tctttgttttgggtactctgtttagcacatagcaaacagtcaataaaatttctccccaccaatgaggcgctgctccggaattaagcattgttgcaactac |
33241150 |
T |
|
| Q |
195 |
taatttggtaaaggttcgattttttctttcggctttaccgttcat |
239 |
Q |
| |
|
||||| |||||| |||| |||||||||||| |||||||||||||| |
|
|
| T |
33241151 |
taattcggtaaacgttctattttttctttccgctttaccgttcat |
33241195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 95 - 239
Target Start/End: Original strand, 47996848 - 47996992
Alignment:
| Q |
95 |
tcttagttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgaggcgctgcaccagaattaagcatgatagcaactac |
194 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| |||| ||||||||||||| ||||| |||||||||||||| || ||||||||||| | |||||||| |
|
|
| T |
47996848 |
tctttgttttgggtactctgtttagcacatagcaaacagtcaataaaatttctccccaccaatgaggcgctgctccggaattaagcattgttgcaactac |
47996947 |
T |
|
| Q |
195 |
taatttggtaaaggttcgattttttctttcggctttaccgttcat |
239 |
Q |
| |
|
||||| |||||| |||| |||||||||||| |||||||||||||| |
|
|
| T |
47996948 |
taattcggtaaacgttctattttttctttccgctttaccgttcat |
47996992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 95 - 145
Target Start/End: Original strand, 17498785 - 17498835
Alignment:
| Q |
95 |
tcttagttttgggtactctgtttagcacatagctaacaatcaataaaattt |
145 |
Q |
| |
|
|||| ||||| |||||||||||||||||||||| |||| |||||||||||| |
|
|
| T |
17498785 |
tctttgttttaggtactctgtttagcacatagcaaacagtcaataaaattt |
17498835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 95 - 145
Target Start/End: Complemental strand, 17554429 - 17554379
Alignment:
| Q |
95 |
tcttagttttgggtactctgtttagcacatagctaacaatcaataaaattt |
145 |
Q |
| |
|
|||| ||||| |||||||||||||||||||||| |||| |||||||||||| |
|
|
| T |
17554429 |
tctttgttttaggtactctgtttagcacatagcaaacagtcaataaaattt |
17554379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 89; Significance: 5e-43; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 95 - 239
Target Start/End: Complemental strand, 3479166 - 3479022
Alignment:
| Q |
95 |
tcttagttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgaggcgctgcaccagaattaagcatgatagcaactac |
194 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| |||| ||||||||||||| ||||| |||||||||||||| || ||||||||||| | |||||||| |
|
|
| T |
3479166 |
tctttgttttgggtactctgtttagcacatagcaaacagtcaataaaatttctccccaccaatgaggcgctgctccggaattaagcattgttgcaactac |
3479067 |
T |
|
| Q |
195 |
taatttggtaaaggttcgattttttctttcggctttaccgttcat |
239 |
Q |
| |
|
||||| |||||| |||| |||||||||||| |||||||||||||| |
|
|
| T |
3479066 |
taattcggtaaacgttctattttttctttccgctttaccgttcat |
3479022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 95 - 239
Target Start/End: Complemental strand, 15765238 - 15765094
Alignment:
| Q |
95 |
tcttagttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgaggcgctgcaccagaattaagcatgatagcaactac |
194 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| |||| ||||||||||||| ||||| |||||||||||||| || ||||||||||| | |||||||| |
|
|
| T |
15765238 |
tctttgttttgggtactctgtttagcacatagcaaacagtcaataaaatttctccccaccaatgaggcgctgctccggaattaagcattgttgcaactac |
15765139 |
T |
|
| Q |
195 |
taatttggtaaaggttcgattttttctttcggctttaccgttcat |
239 |
Q |
| |
|
||||| |||||| |||| |||||||||||| |||||||||||||| |
|
|
| T |
15765138 |
taattcggtaaacgttctattttttctttccgctttaccgttcat |
15765094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 95 - 239
Target Start/End: Original strand, 17361953 - 17362097
Alignment:
| Q |
95 |
tcttagttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgaggcgctgcaccagaattaagcatgatagcaactac |
194 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| |||| ||||||||||||| ||||| |||||||||||||| || ||||||||||| | |||||||| |
|
|
| T |
17361953 |
tctttgttttgggtactctgtttagcacatagcaaacagtcaataaaatttctccccaccaatgaggcgctgctccggaattaagcattgttgcaactac |
17362052 |
T |
|
| Q |
195 |
taatttggtaaaggttcgattttttctttcggctttaccgttcat |
239 |
Q |
| |
|
||||| |||||| |||| |||||||||||| |||||||||||||| |
|
|
| T |
17362053 |
taattcggtaaacgttctattttttctttccgctttaccgttcat |
17362097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 95 - 239
Target Start/End: Original strand, 17366595 - 17366739
Alignment:
| Q |
95 |
tcttagttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgaggcgctgcaccagaattaagcatgatagcaactac |
194 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| |||| ||||||||||||| ||||| |||||||||||||| || ||||||||||| | |||||||| |
|
|
| T |
17366595 |
tctttgttttgggtactctgtttagcacatagcaaacagtcaataaaatttctccccaccaatgaggcgctgctccggaattaagcattgttgcaactac |
17366694 |
T |
|
| Q |
195 |
taatttggtaaaggttcgattttttctttcggctttaccgttcat |
239 |
Q |
| |
|
||||| |||||| |||| |||||||||||| |||||||||||||| |
|
|
| T |
17366695 |
taattcggtaaacgttctattttttctttccgctttaccgttcat |
17366739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 95 - 239
Target Start/End: Complemental strand, 20092869 - 20092725
Alignment:
| Q |
95 |
tcttagttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgaggcgctgcaccagaattaagcatgatagcaactac |
194 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| |||| ||||||||||||| ||||| |||||||||||||| || ||||||||||| | |||||||| |
|
|
| T |
20092869 |
tctttgttttgggtactctgtttagcacatagcaaacagtcaataaaatttctccccaccaatgaggcgctgctccggaattaagcattgttgcaactac |
20092770 |
T |
|
| Q |
195 |
taatttggtaaaggttcgattttttctttcggctttaccgttcat |
239 |
Q |
| |
|
||||| |||||| |||| |||||||||||| |||||||||||||| |
|
|
| T |
20092769 |
taattcggtaaacgttctattttttctttccgctttaccgttcat |
20092725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 89; Significance: 5e-43; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 95 - 239
Target Start/End: Complemental strand, 42725667 - 42725523
Alignment:
| Q |
95 |
tcttagttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgaggcgctgcaccagaattaagcatgatagcaactac |
194 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| |||| ||||||||||||| ||||| |||||||||||||| || ||||||||||| | |||||||| |
|
|
| T |
42725667 |
tctttgttttgggtactctgtttagcacatagcaaacagtcaataaaatttctccccaccaatgaggcgctgctccggaattaagcattgttgcaactac |
42725568 |
T |
|
| Q |
195 |
taatttggtaaaggttcgattttttctttcggctttaccgttcat |
239 |
Q |
| |
|
||||| |||||| |||| |||||||||||| |||||||||||||| |
|
|
| T |
42725567 |
taattcggtaaacgttctattttttctttccgctttaccgttcat |
42725523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 95 - 239
Target Start/End: Complemental strand, 44756819 - 44756675
Alignment:
| Q |
95 |
tcttagttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgaggcgctgcaccagaattaagcatgatagcaactac |
194 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| |||| ||||||||||||| ||||| |||||||||||||| || ||||||||||| | |||||||| |
|
|
| T |
44756819 |
tctttgttttgggtactctgtttagcacatagcaaacagtcaataaaatttctccccaccaatgaggcgctgctccggaattaagcattgttgcaactac |
44756720 |
T |
|
| Q |
195 |
taatttggtaaaggttcgattttttctttcggctttaccgttcat |
239 |
Q |
| |
|
||||| |||||| |||| |||||||||||| |||||||||||||| |
|
|
| T |
44756719 |
taattcggtaaacgttctattttttctttccgctttaccgttcat |
44756675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 98 - 239
Target Start/End: Complemental strand, 40035975 - 40035834
Alignment:
| Q |
98 |
tagttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgaggcgctgcaccagaattaagcatgatagcaactactaa |
197 |
Q |
| |
|
||||||||||||||||||||||||||| | |||||||||||||||||| ||| | |||||||||| ||||| |||||||||||||| |||||||||| |
|
|
| T |
40035975 |
tagttttgggtactctgtttagcacatggaaaacaatcaataaaatttctcccgaccaatgaggcgatgcactgaaattaagcatgataacaactactaa |
40035876 |
T |
|
| Q |
198 |
tttggtaaaggttcgattttttctttcggctttaccgttcat |
239 |
Q |
| |
|
|| ||||||||||| |||||||||||| ||| |||| ||||| |
|
|
| T |
40035875 |
ttcggtaaaggttctattttttctttcagctctacctttcat |
40035834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 162 - 239
Target Start/End: Original strand, 27568706 - 27568786
Alignment:
| Q |
162 |
cgctgcaccagaattaagcatgatagcaactactaatttggtaaaggttcga---ttttttctttcggctttaccgttcat |
239 |
Q |
| |
|
||||||| | |||||||||||||||||||||| ||||| |||||||||| | |||||||| || |||||||||||||| |
|
|
| T |
27568706 |
cgctgcaacggaattaagcatgatagcaactaataattcggtaaaggttatatttttttttctctccgctttaccgttcat |
27568786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 89; Significance: 5e-43; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 95 - 239
Target Start/End: Original strand, 27714319 - 27714463
Alignment:
| Q |
95 |
tcttagttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgaggcgctgcaccagaattaagcatgatagcaactac |
194 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| |||| ||||||||||||| ||||| |||||||||||||| || ||||||||||| | |||||||| |
|
|
| T |
27714319 |
tctttgttttgggtactctgtttagcacatagcaaacagtcaataaaatttctccccaccaatgaggcgctgctccggaattaagcattgttgcaactac |
27714418 |
T |
|
| Q |
195 |
taatttggtaaaggttcgattttttctttcggctttaccgttcat |
239 |
Q |
| |
|
||||| |||||| |||| |||||||||||| |||||||||||||| |
|
|
| T |
27714419 |
taattcggtaaacgttctattttttctttccgctttaccgttcat |
27714463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 95 - 239
Target Start/End: Complemental strand, 37406635 - 37406491
Alignment:
| Q |
95 |
tcttagttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgaggcgctgcaccagaattaagcatgatagcaactac |
194 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| |||| ||||||||||||| ||||| |||||||||||||| | ||||||||||| | |||||||| |
|
|
| T |
37406635 |
tctttgttttgggtactctgtttagcacatagcaaacagtcaataaaatttctccccaccaatgaggcgctgcttcggaattaagcattgttgcaactac |
37406536 |
T |
|
| Q |
195 |
taatttggtaaaggttcgattttttctttcggctttaccgttcat |
239 |
Q |
| |
|
||||| |||||| |||| |||||||||||| |||||||||||||| |
|
|
| T |
37406535 |
taattcggtaaacgttctattttttctttctgctttaccgttcat |
37406491 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 95 - 239
Target Start/End: Original strand, 5727993 - 5728137
Alignment:
| Q |
95 |
tcttagttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgaggcgctgcaccagaattaagcatgatagcaactac |
194 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| |||| ||||||||||||| ||||| |||||||||||||| || ||||||||||| | |||||||| |
|
|
| T |
5727993 |
tctttgttttgggtactctgtttagcacatagcaaacagtcaataaaatttctccccaccaatgaggcgctgctccggaattaagcattgttgcaactac |
5728092 |
T |
|
| Q |
195 |
taatttggtaaaggttcgattttttctttcggctttaccgttcat |
239 |
Q |
| |
|
||||| | |||| ||| |||||||||||| |||||||||||||| |
|
|
| T |
5728093 |
taattcgataaacattctattttttctttccgctttaccgttcat |
5728137 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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