View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12657_low_1 (Length: 696)
Name: NF12657_low_1
Description: NF12657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12657_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 637; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 637; E-Value: 0
Query Start/End: Original strand, 22 - 686
Target Start/End: Original strand, 49870780 - 49871443
Alignment:
| Q |
22 |
taaccctctggtacaaagagaccatcaatgagagaatccacgataacaaccttggagaagtttctccatggtcttcccaaataagctatcttgggttgca |
121 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49870780 |
taaccctctggtacaaagagaccatcaatgagagaatccacgataacaaccttggagaagtttctccatggtcttcccaaataagctatcttgggttgca |
49870879 |
T |
|
| Q |
122 |
tggtaagtacttcgggttccccggtgaaatggcagttttggaaaacaagggcggatacactgtcaactttggttcttcctcctgctgtcaccatgcattg |
221 |
Q |
| |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49870880 |
tggtaagaacttcgggttccccggtgaaatggcagttttggaaaacaagggcggatacactgtcaactttggttcttcctcctgctgtcaccatgcattg |
49870979 |
T |
|
| Q |
222 |
ttgagttgccattggttttctaacgacgagcttgcagttttggaaaactccaactgcatcaccaaagacaaagtcgattgttccggtaatggtgcagtcg |
321 |
Q |
| |
|
|||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49870980 |
ttgagttgccattggttttctaacgatgagtttgcagttttggaaaactccaactgcatcaccaaagacaaagtcgattgttccggtaatggtgcagtcg |
49871079 |
T |
|
| Q |
322 |
cggtagaattgtcttttggattgtgtgtagagtgtatcttggtaaccgttcatttcgcagttgtagaacaatgctttgtctgctgttacacggagggcca |
421 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49871080 |
cggtagaattgtcttttggattgtgtgtagagtgtatcttggtaaccgttcatttcacagttgtagaacaatgctttgtctgctgttacacggagggcca |
49871179 |
T |
|
| Q |
422 |
ctgcttgatgctttgcggcaccggctgagttctcgaatccgacgttaaaggccgtgaaatgggcagagttcacacctgtcaaattaataacaaatcgatc |
521 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
49871180 |
ctgcttgatgctttgcggcaccggctgagttctcgaatccgacgttaaaggccgtgaaatgggcagagttcacacctgtc-aattaataacaaatcgatc |
49871278 |
T |
|
| Q |
522 |
attacaacttacaacttaggaacagatgctaaatattaaacattgcattagtaacttactgaatgttgcggtattgtaagtctgcacaccatcaccatag |
621 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49871279 |
attacaacttacaacttaggaacagatgctaaatattaatcattgcattagtaacttactgaatgttgcggtattgtaagtctgcacaccatcaccatag |
49871378 |
T |
|
| Q |
622 |
cttttgctaccagtaaatatggtctttttgggaccatcaccaataatagtaacatggtccctatg |
686 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49871379 |
cttttgctaccagtaaatatggtctttttgggaccatcaccaataatagtaacatggtccctatg |
49871443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 476; E-Value: 0
Query Start/End: Original strand, 19 - 685
Target Start/End: Original strand, 49864840 - 49865511
Alignment:
| Q |
19 |
atataaccctctggtacaaagagaccatcaatgagagaatccacgataacaaccttggagaagtttctccatggtcttcccaaataagctatcttgggtt |
118 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
49864840 |
atataaccctctggtacaaagaggccatcaatgagagaatccacgataacaaccttggagaaatttctccatggtcttcccaaataagctatcttgggtt |
49864939 |
T |
|
| Q |
119 |
gcatggtaagtacttcgggttccccggtgaaatggcagttttggaaaacaagggcggatacactgtcaactttggttcttcctcctgctgtcaccatgca |
218 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49864940 |
gcatggtaagaacttcgggttccccggtgaaatgacagttttggaaaacaagggcggatacactgtcaactttggttcttcctcctgctgtcaccatgca |
49865039 |
T |
|
| Q |
219 |
ttgttgagttgccattggttttctaacgacgagcttgcagttttggaaaactccaactgcatcaccaaagacaaagtcgattgttccggtaatggtgcag |
318 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| |||| |||||| |
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| T |
49865040 |
ttgttgatttgccattggttttctaacgacgagcttgcagttttggaaaactccaacagcatcaccaaagacaaagtcaattgttccgctaatagtgcag |
49865139 |
T |
|
| Q |
319 |
tcgcggtagaattgtcttttggattgtgtgtagagtgtatcttggtaaccgttcatttcgcagttgtagaacaatgctttgtctgctgttacacggaggg |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
49865140 |
tcgcggtagaattgtcttttggattgtgtgtagagtgtatcttggtaaccgtccatttgacagttgtagaacaatgctttgtctgctgttacacggaggg |
49865239 |
T |
|
| Q |
419 |
ccactgcttgatgctttgcggcaccggctgagttctcgaatccgacgttaaaggccgtgaaatgggcagagttcacacctgtcaaattaataacaaatcg |
518 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||| | |||||||||||| || |
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|
| T |
49865240 |
ccactgcttggtgctttgcggcaccggctgagttctcaaatccgacgttcaaggcggtgaaatgggcagagttcacacctg-ccaattaataacaacccg |
49865338 |
T |
|
| Q |
519 |
atcattacaacttacaacttaggaacagatgctaaatattaaacattgcat----------tagtaacttactgaatgttgcggtattgtaagtctgcac |
608 |
Q |
| |
|
|| ||||||||||| || | |||| | |||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
49865339 |
atatacacaacttacaa-ttttttagagatcc---atattaaacattgcattaaaattgagtagtaacttaccgaatgttgcggtattgtaagtctgcac |
49865434 |
T |
|
| Q |
609 |
accatcaccatagcttttgctaccagtaaatatggtctttttgggaccatcaccaataatagtaacatggtccctat |
685 |
Q |
| |
|
||||||| ||||||||||||| |||||||||||||||||| |||||||||| ||||||||||||||||||||||||| |
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|
| T |
49865435 |
accatcagcatagcttttgctgccagtaaatatggtctttgtgggaccatcgccaataatagtaacatggtccctat |
49865511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 58; Significance: 5e-24; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 253 - 430
Target Start/End: Complemental strand, 13967668 - 13967491
Alignment:
| Q |
253 |
ttgcagttttggaaaactccaactgcatcaccaaagacaaagtcgattgttccggtaatggtgcagtcgcggtagaattgtcttttggattgtgtgtaga |
352 |
Q |
| |
|
||||| |||||||||||||||| || || ||||| |||||||||||||| || | |||| |||||| ||||||||||| | || |||||| ||||| |
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|
| T |
13967668 |
ttgcaattttggaaaactccaaaggcgtcgccaaaaacaaagtcgattgtgccagagatggcgcagtcacggtagaattgacgttgggattggacgtaga |
13967569 |
T |
|
| Q |
353 |
gtgtatcttggtaaccgttcatttcgcagttgtagaacaatgctttgtctgctgttacacggagggccactgcttgat |
430 |
Q |
| |
|
|||| |||||| |||||| ||||| ||||||| ||| | ||||| ||||||||||| |||||||| |||||||||| |
|
|
| T |
13967568 |
gtgtgtcttggaaaccgtccatttgacagttgtggaatattgcttgatctgctgttactcggagggcaactgcttgat |
13967491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 234 - 431
Target Start/End: Complemental strand, 13960523 - 13960326
Alignment:
| Q |
234 |
tggttttctaacgacgagcttgcagttttggaaaactccaactgcatcaccaaagacaaagtcgattgttccggtaatggtgcagtcgcggtagaattgt |
333 |
Q |
| |
|
||||||||| |||| || |||||||||||||||||| ||| || ||||| ||| | ||||||||| || | ||| ||||||| ||||||||||| |
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|
| T |
13960523 |
tggttttcttacgattagtttgcagttttggaaaactgcaaaggcgtcaccgtagatcatgtcgattgtgccagagatgctgcagtcacggtagaattga |
13960424 |
T |
|
| Q |
334 |
cttttggattgtgtgtagagtgtatcttggtaaccgttcatttcgcagttgtagaacaatgctttgtctgctgttacacggagggccactgcttgatg |
431 |
Q |
| |
|
| || ||||| | | ||||||| |||||||||| | |||| |||||||||||| | |||||||||||||||||| ||||| || ||||||||||| |
|
|
| T |
13960423 |
cgttgggattcggcgaagagtgttgcttggtaaccatctatttggcagttgtagaagattgctttgtctgctgttactcggagtgcaactgcttgatg |
13960326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 316 - 368
Target Start/End: Original strand, 19394572 - 19394624
Alignment:
| Q |
316 |
cagtcgcggtagaattgtcttttggattgtgtgtagagtgtatcttggtaacc |
368 |
Q |
| |
|
|||||||||||||||||||| | || ||||| ||| ||||| ||||||||||| |
|
|
| T |
19394572 |
cagtcgcggtagaattgtctgtgggtttgtgcgtatagtgtgtcttggtaacc |
19394624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 253 - 332
Target Start/End: Complemental strand, 37150693 - 37150614
Alignment:
| Q |
253 |
ttgcagttttggaaaactccaactgcatcaccaaagacaaagtcgattgttccggtaatggtgcagtcgcggtagaattg |
332 |
Q |
| |
|
|||||||||||||| ||| |||||| ||||||||||||||||| || || | |||||||||||| ||||||||||| |
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|
| T |
37150693 |
ttgcagttttggaatactgattctgcattgccaaagacaaagtcgatggtacctgaaatggtgcagtcacggtagaattg |
37150614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 253 - 332
Target Start/End: Complemental strand, 37159518 - 37159439
Alignment:
| Q |
253 |
ttgcagttttggaaaactccaactgcatcaccaaagacaaagtcgattgttccggtaatggtgcagtcgcggtagaattg |
332 |
Q |
| |
|
|||||||||||||| ||| |||||| ||||||||||||||||| || || | |||||||||||| ||||||||||| |
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|
| T |
37159518 |
ttgcagttttggaatactgattctgcattgccaaagacaaagtcgatggtacctgaaatggtgcagtcacggtagaattg |
37159439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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