View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12657_low_11 (Length: 312)
Name: NF12657_low_11
Description: NF12657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12657_low_11 |
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| [»] scaffold0256 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 4 - 293
Target Start/End: Original strand, 48298249 - 48298538
Alignment:
| Q |
4 |
ctgctcgttcactgccttgtcttgtttgagaataggacaagtcttgccacctgccacctgaagacgttccaccaccaccgccagcagctgcagcggcata |
103 |
Q |
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|||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48298249 |
ctgcgcgtccactgccttgtcttgtttgagaataggacaagtcttgccacctgccacctgaagacgttccaccaccaccgccagcagctgcagcggcata |
48298348 |
T |
|
| Q |
104 |
atcctgcccatctctccgccttggaggcagatccaacccaccaccacctaatcttgcttctgaagctctttcattactctctgcaaggatagataatttc |
203 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48298349 |
atcctgcccatctctccgccttggaggcagatccaacccaccaccacctaatcttgcttctgaagctctttcattactctctgcaaggatagataatttc |
48298448 |
T |
|
| Q |
204 |
tcagtcaactggaatgccaaagcctgcacccttgagagttcaacatttctgaaaataatgcacccagttggctgatcccagcttgcatga |
293 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48298449 |
tcagtcaactggaatgccaaagcctgcacccttgagagttcaacatttctgaaaataatgcacccagttggctgatcccagcttgcatga |
48298538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 253; Significance: 1e-141; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 13 - 293
Target Start/End: Original strand, 233142 - 233422
Alignment:
| Q |
13 |
cactgccttgtcttgtttgagaataggacaagtcttgccacctgccacctgaagacgttccaccaccaccgccagcagctgcagcggcataatcctgccc |
112 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
233142 |
cactgccttgccttgtttgagaataggacaagtcttgccacctgccacctgaagacgttccactgccaccgccagcagctgcagcggcataatcctgccc |
233241 |
T |
|
| Q |
113 |
atctctccgccttggaggcagatccaacccaccaccacctaatcttgcttctgaagctctttcattactctctgcaaggatagataatttctcagtcaac |
212 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
233242 |
atctctccgccttggaggcagatccaacccaccaccgcctaaccttgcttctgtagctctttcattactctctgcaaggatagataatttctcagtcaac |
233341 |
T |
|
| Q |
213 |
tggaatgccaaagcctgcacccttgagagttcaacatttctgaaaataatgcacccagttggctgatcccagcttgcatga |
293 |
Q |
| |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
233342 |
tggaatgccaaagcctgcacccttgagtgttcaacatttctgaaaataatgcacccagttggctgatcccagcttgcatga |
233422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 156 - 285
Target Start/End: Complemental strand, 21629664 - 21629536
Alignment:
| Q |
156 |
cttgcttctgaagctctttcattactctctgcaaggatagataatttctcagtcaactggaatgccaaagcctgcacccttgagagttcaacatttctga |
255 |
Q |
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|
||||||| || ||||||||||||||||| |||||||||||||| ||| | |||||||| ||| ||||| ||||||||||||||| |||||||||||| || |
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| T |
21629664 |
cttgcttatgtagctctttcattactctttgcaaggatagata-tttattagtcaactcgaacgccaaggcctgcacccttgagtgttcaacatttcgga |
21629566 |
T |
|
| Q |
256 |
aaataatgcacccagttggctgatcccagc |
285 |
Q |
| |
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| | ||||||||||| ||| |||||||||| |
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| T |
21629565 |
atacaatgcacccagatggttgatcccagc |
21629536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 13 - 293
Target Start/End: Complemental strand, 7392353 - 7392073
Alignment:
| Q |
13 |
cactgccttgtcttgtttgagaataggacaagtcttgccacctgccacctgaagacgttccaccaccaccgccagcagctgcagcggcataatcctgccc |
112 |
Q |
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|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
7392353 |
cactgccttgccttgtttgagaataggacaagtcttgccacctgccacctgaagacgttccactaccaccgccagcagctgcagcggcataatcctgccc |
7392254 |
T |
|
| Q |
113 |
atctctccgccttggaggcagatccaacccaccaccacctaatcttgcttctgaagctctttcattactctctgcaaggatagataatttctcagtcaac |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||| || ||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7392253 |
atctctccgccttggaggcagatccaacccaccgccgcctaaccttgcttctgtagctctttcattactctctgcaaggatagataatttctcagtcaac |
7392154 |
T |
|
| Q |
213 |
tggaatgccaaagcctgcacccttgagagttcaacatttctgaaaataatgcacccagttggctgatcccagcttgcatga |
293 |
Q |
| |
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||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| |||||||||||||||||| |
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| T |
7392153 |
tggaatgccaaagcctgcacccttgagtgttcaacatttcggaaaataatgcacccagttggttgatcccagcttgcatga |
7392073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 82; Significance: 1e-38; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 158 - 295
Target Start/End: Complemental strand, 16874777 - 16874640
Alignment:
| Q |
158 |
tgcttctgaagctctttcattactctctgcaaggatagataatttctcagtcaactggaatgccaaagcctgcacccttgagagttcaacatttctgaaa |
257 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||||| ||||||||||||||||| | ||| ||||||||||||||| | |||||||||||||||| ||| |
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| T |
16874777 |
tgcttctgtagctctttcattactcttagcaaggatggataatttctcagtcaattcgaacgccaaagcctgcaccatagagagttcaacatttcggaac |
16874678 |
T |
|
| Q |
258 |
ataatgcacccagttggctgatcccagcttgcatgatg |
295 |
Q |
| |
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| ||||||||||| |||||||||||| ||||||||||| |
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| T |
16874677 |
acaatgcacccagatggctgatcccaccttgcatgatg |
16874640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 150 - 291
Target Start/End: Complemental strand, 16572903 - 16572762
Alignment:
| Q |
150 |
cctaatcttgcttctgaagctctttcattactctctgcaaggatagataatttctcagtcaactggaatgccaaagcctgcacccttgagagttcaacat |
249 |
Q |
| |
|
||||||| | |||||| ||||||||||||||||| |||||||| ||||||||||||||||||| ||| ||||||||||||||| | ||| ||||||||| |
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| T |
16572903 |
cctaatcatacttctgtagctctttcattactcttagcaaggatggataatttctcagtcaactcgaacgccaaagcctgcaccatagagggttcaacat |
16572804 |
T |
|
| Q |
250 |
ttctgaaaataatgcacccagttggctgatcccagcttgcat |
291 |
Q |
| |
|
||| ||| | ||||||||||| |||||||||||| ||||||| |
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| T |
16572803 |
ttcggaacacaatgcacccagatggctgatcccaccttgcat |
16572762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 158 - 295
Target Start/End: Complemental strand, 16580916 - 16580779
Alignment:
| Q |
158 |
tgcttctgaagctctttcattactctctgcaaggatagataatttctcagtcaactggaatgccaaagcctgcacccttgagagttcaacatttctgaaa |
257 |
Q |
| |
|
|||||||| |||||||||| |||||| |||||||| ||||||||||| ||||||| ||| ||||||||||||||| | ||| |||||||||||| ||| |
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| T |
16580916 |
tgcttctgtagctctttcactactcttagcaaggatggataatttctcggtcaactcgaacgccaaagcctgcaccatagagggttcaacatttcggaac |
16580817 |
T |
|
| Q |
258 |
ataatgcacccagttggctgatcccagcttgcatgatg |
295 |
Q |
| |
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| ||||||||||| |||||||||||| ||||||||||| |
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| T |
16580816 |
acaatgcacccagatggctgatcccaccttgcatgatg |
16580779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 158 - 295
Target Start/End: Original strand, 16614464 - 16614601
Alignment:
| Q |
158 |
tgcttctgaagctctttcattactctctgcaaggatagataatttctcagtcaactggaatgccaaagcctgcacccttgagagttcaacatttctgaaa |
257 |
Q |
| |
|
|||||||| |||||||||| |||||| |||||||| ||||||||||| ||||||| ||| ||||||||||||||| | ||| |||||||||||| ||| |
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|
| T |
16614464 |
tgcttctgtagctctttcactactcttagcaaggatggataatttctcggtcaactcgaacgccaaagcctgcaccatagagggttcaacatttcggaac |
16614563 |
T |
|
| Q |
258 |
ataatgcacccagttggctgatcccagcttgcatgatg |
295 |
Q |
| |
|
| ||||||||||| |||||||||||| ||||||||||| |
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| T |
16614564 |
acaatgcacccagatggctgatcccaccttgcatgatg |
16614601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0256 (Bit Score: 57; Significance: 8e-24; HSPs: 1)
Name: scaffold0256
Description:
Target: scaffold0256; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 182 - 286
Target Start/End: Original strand, 10838 - 10942
Alignment:
| Q |
182 |
ctctgcaaggatagataatttctcagtcaactggaatgccaaagcctgcacccttgagagttcaacatttctgaaaataatgcacccagttggctgatcc |
281 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||| | ||||||||||||||||||| ||||||||||| ||| | |||||| |||| ||| || ||| |
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| T |
10838 |
ctctgcaaggatagataatttctcagtcaacttgaacgacaaagcctgcacccttgagtgttcaacattttggaacacaatgcatccagatggttggtcc |
10937 |
T |
|
| Q |
282 |
cagct |
286 |
Q |
| |
|
||||| |
|
|
| T |
10938 |
cagct |
10942 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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