View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12657_low_15 (Length: 201)
Name: NF12657_low_15
Description: NF12657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12657_low_15 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 174; Significance: 8e-94; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 174; E-Value: 8e-94
Query Start/End: Original strand, 16 - 189
Target Start/End: Complemental strand, 17795775 - 17795602
Alignment:
| Q |
16 |
acatcagaaagtaatctagttcctctgattggaatgtcatccaccatctcatttttccaatcttcttcactagtctgcctctcaacatttttaatctgat |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17795775 |
acatcagaaagtaatctagttcctctgattggaatgtcatccaccatctcatttttccaatcttcttcactagtctgcctctcaacatttttaatctgat |
17795676 |
T |
|
| Q |
116 |
ttgaagcttgatttgacacttttaaagtatcccatacccattcttcattttccacaaagtgcacgtctctgctt |
189 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17795675 |
ttgaagcttgatttgacacttttaaagtatcccatacccattcttcattttccacaaagtgcacgtctctgctt |
17795602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 16 - 189
Target Start/End: Complemental strand, 1543653 - 1543480
Alignment:
| Q |
16 |
acatcagaaagtaatctagttcctctgattggaatgtcatccaccatctcatttttccaatcttcttcactagtctgcctctcaacatttttaatctgat |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1543653 |
acatcagaaagtaatctagttcctctgattggaatgtcatccaccatctcatttttccaatcttcttcactagtctgcctctcaacatttttaatctgat |
1543554 |
T |
|
| Q |
116 |
ttgaagcttgatttgacacttttaaagtatcccatacccattcttcattttccacaaagtgcacgtctctgctt |
189 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1543553 |
ttgaagcttgatttgacacttttaaagtatcccagacccattcttcattttccacaaagtgcacgtctctgctt |
1543480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 170; Significance: 2e-91; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 16 - 189
Target Start/End: Complemental strand, 26403286 - 26403113
Alignment:
| Q |
16 |
acatcagaaagtaatctagttcctctgattggaatgtcatccaccatctcatttttccaatcttcttcactagtctgcctctcaacatttttaatctgat |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26403286 |
acatcagaaagtaatctagttcctctgattggaatgtcatccaccatctcatttttccaatcttcttcactagtctgcctctcaacatttttaatctgat |
26403187 |
T |
|
| Q |
116 |
ttgaagcttgatttgacacttttaaagtatcccatacccattcttcattttccacaaagtgcacgtctctgctt |
189 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26403186 |
ttgaagcttgatttgacacttttaaagtatcccagacccattcttcattttccacaaagtgcacgtctctgctt |
26403113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 80
Target Start/End: Original strand, 6837013 - 6837077
Alignment:
| Q |
16 |
acatcagaaagtaatctagttcctctgattggaatgtcatccaccatctcatttttccaatcttc |
80 |
Q |
| |
|
||||||||||||||||| || ||||||| |||| |||||| ||||| ||||||| ||||||||| |
|
|
| T |
6837013 |
acatcagaaagtaatcttgtgcctctgacaggaacgtcatctaccatttcattttcccaatcttc |
6837077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 166; Significance: 5e-89; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 16 - 185
Target Start/End: Complemental strand, 7036357 - 7036188
Alignment:
| Q |
16 |
acatcagaaagtaatctagttcctctgattggaatgtcatccaccatctcatttttccaatcttcttcactagtctgcctctcaacatttttaatctgat |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7036357 |
acatcagaaagtaatctagttcctctgattggaatgtcatccaccatctcatttttccaatcttcttcactagtctgcctctcaacatttttaatctgat |
7036258 |
T |
|
| Q |
116 |
ttgaagcttgatttgacacttttaaagtatcccatacccattcttcattttccacaaagtgcacgtctct |
185 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
7036257 |
ttgaagcttgatttgacacttttaaagtatcccagacccattcttcattttccacaaagtgcacgtctct |
7036188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University