View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12657_low_4 (Length: 531)

Name: NF12657_low_4
Description: NF12657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12657_low_4
NF12657_low_4
[»] chr7 (17 HSPs)
chr7 (156-486)||(23751901-23752223)
chr7 (363-486)||(4017729-4017852)
chr7 (363-501)||(29812598-29812737)
chr7 (363-492)||(7133212-7133342)
chr7 (401-486)||(23930220-23930305)
chr7 (362-486)||(38804488-38804613)
chr7 (401-482)||(5938477-5938558)
chr7 (405-482)||(17780061-17780138)
chr7 (358-440)||(24339695-24339777)
chr7 (363-434)||(598256-598327)
chr7 (363-478)||(41229237-41229348)
chr7 (368-486)||(43249994-43250118)
chr7 (363-417)||(43027404-43027459)
chr7 (362-434)||(21880200-21880272)
chr7 (431-499)||(22683758-22683826)
chr7 (363-417)||(5409771-5409826)
chr7 (385-492)||(12278830-12278932)
[»] chr5 (23 HSPs)
chr5 (372-499)||(43554510-43554636)
chr5 (367-467)||(36577616-36577715)
chr5 (425-493)||(39695996-39696064)
chr5 (363-473)||(26205694-26205805)
chr5 (363-433)||(17123097-17123166)
chr5 (401-480)||(25863211-25863290)
chr5 (365-489)||(7997108-7997227)
chr5 (405-479)||(14574027-14574100)
chr5 (363-435)||(2419913-2419986)
chr5 (366-434)||(39268541-39268609)
chr5 (425-481)||(5467975-5468031)
chr5 (363-434)||(43564929-43565000)
chr5 (386-447)||(21137729-21137789)
chr5 (422-492)||(18607091-18607161)
chr5 (363-440)||(21522803-21522880)
chr5 (363-440)||(21533369-21533446)
chr5 (367-479)||(23220991-23221099)
chr5 (387-440)||(36642716-36642768)
chr5 (363-439)||(39698595-39698671)
chr5 (363-434)||(17393305-17393377)
chr5 (385-440)||(21542083-21542138)
chr5 (363-434)||(21576685-21576756)
chr5 (438-486)||(42469222-42469270)
[»] chr4 (23 HSPs)
chr4 (361-493)||(3144585-3144717)
chr4 (361-486)||(24343508-24343634)
chr4 (367-486)||(20743210-20743336)
chr4 (363-448)||(53381530-53381616)
chr4 (363-467)||(23386166-23386277)
chr4 (363-486)||(18513175-18513299)
chr4 (363-434)||(23292926-23292997)
chr4 (436-504)||(47191001-47191069)
chr4 (363-440)||(19482721-19482798)
chr4 (422-480)||(31243542-31243600)
chr4 (364-440)||(30982808-30982884)
chr4 (386-457)||(944625-944697)
chr4 (207-251)||(4926649-4926693)
chr4 (360-410)||(715542-715593)
chr4 (360-410)||(752868-752919)
chr4 (363-486)||(7012067-7012197)
chr4 (387-478)||(6273953-6274050)
chr4 (454-499)||(29205432-29205477)
chr4 (361-409)||(37203324-37203373)
chr4 (384-412)||(11326592-11326620)
chr4 (363-399)||(18844423-18844459)
chr4 (361-401)||(36635411-36635451)
chr4 (438-478)||(49659533-49659573)
[»] chr8 (23 HSPs)
chr8 (363-480)||(39820436-39820547)
chr8 (364-497)||(13009423-13009562)
chr8 (363-486)||(30067968-30068086)
chr8 (363-440)||(29510233-29510310)
chr8 (362-501)||(40063937-40064082)
chr8 (428-484)||(35431140-35431196)
chr8 (414-481)||(8017492-8017559)
chr8 (425-480)||(13845241-13845296)
chr8 (365-486)||(44067517-44067644)
chr8 (428-486)||(1676713-1676771)
chr8 (363-440)||(15816058-15816135)
chr8 (363-440)||(22652029-22652106)
chr8 (462-520)||(12627026-12627084)
chr8 (363-439)||(34450961-34451037)
chr8 (418-486)||(3658148-3658216)
chr8 (362-398)||(11927014-11927050)
chr8 (385-480)||(14513130-14513226)
chr8 (363-434)||(17751703-17751775)
chr8 (363-434)||(17760690-17760762)
chr8 (363-434)||(24413499-24413570)
chr8 (418-481)||(26799833-26799894)
chr8 (418-486)||(26915230-26915298)
chr8 (363-434)||(36450694-36450765)
[»] chr1 (25 HSPs)
chr1 (363-486)||(42004882-42005005)
chr1 (401-488)||(6936373-6936460)
chr1 (363-499)||(40747707-40747844)
chr1 (363-440)||(40917802-40917879)
chr1 (429-495)||(6573981-6574047)
chr1 (363-412)||(34741916-34741965)
chr1 (363-440)||(18556385-18556462)
chr1 (363-440)||(47989550-47989627)
chr1 (385-481)||(351040-351137)
chr1 (363-439)||(6427518-6427594)
chr1 (361-441)||(32899931-32900012)
chr1 (363-434)||(32461393-32461464)
chr1 (363-434)||(37598879-37598950)
chr1 (424-508)||(39101178-39101262)
chr1 (363-440)||(9828097-9828174)
chr1 (430-488)||(22794080-22794138)
chr1 (365-434)||(42359391-42359460)
chr1 (363-439)||(15765800-15765877)
chr1 (426-486)||(21145467-21145528)
chr1 (365-479)||(1486646-1486760)
chr1 (363-434)||(9690213-9690285)
chr1 (386-437)||(17831485-17831537)
chr1 (453-493)||(23440004-23440044)
chr1 (212-252)||(34673835-34673875)
chr1 (431-486)||(48415728-48415784)
[»] chr3 (26 HSPs)
chr3 (364-486)||(15864834-15864950)
chr3 (363-488)||(27903631-27903757)
chr3 (386-486)||(14223811-14223911)
chr3 (363-488)||(21211287-21211413)
chr3 (363-486)||(25074790-25074914)
chr3 (401-488)||(12704630-12704717)
chr3 (367-489)||(25651969-25652092)
chr3 (401-492)||(25326421-25326512)
chr3 (363-486)||(8903433-8903554)
chr3 (363-440)||(41961579-41961656)
chr3 (363-482)||(52369780-52369906)
chr3 (410-480)||(25892467-25892537)
chr3 (365-440)||(4987222-4987297)
chr3 (360-434)||(20503513-20503587)
chr3 (365-486)||(24204983-24205099)
chr3 (363-434)||(55401123-55401194)
chr3 (388-477)||(51512142-51512232)
chr3 (360-412)||(11610578-11610631)
chr3 (363-439)||(14209167-14209243)
chr3 (428-501)||(25365448-25365521)
chr3 (363-411)||(34185052-34185101)
chr3 (364-439)||(14216946-14217021)
chr3 (364-439)||(14223075-14223150)
chr3 (365-479)||(29508452-29508567)
chr3 (434-482)||(33006828-33006876)
chr3 (363-434)||(40993275-40993346)
[»] chr2 (14 HSPs)
chr2 (364-486)||(23354582-23354710)
chr2 (365-486)||(23354926-23355053)
chr2 (425-499)||(25544469-25544543)
chr2 (358-440)||(37419796-37419878)
chr2 (399-486)||(37986780-37986867)
chr2 (363-486)||(11307934-11308061)
chr2 (401-481)||(24011042-24011122)
chr2 (361-440)||(26769564-26769643)
chr2 (363-440)||(35056921-35056998)
chr2 (386-481)||(38919212-38919313)
chr2 (370-430)||(2846854-2846916)
chr2 (365-434)||(2438661-2438730)
chr2 (364-440)||(44860373-44860449)
chr2 (426-486)||(10535757-10535817)
[»] chr6 (24 HSPs)
chr6 (363-486)||(34446566-34446690)
chr6 (424-486)||(6389744-6389806)
chr6 (407-489)||(17168442-17168524)
chr6 (361-484)||(26247429-26247552)
chr6 (425-521)||(19602178-19602276)
chr6 (428-486)||(12086345-12086403)
chr6 (366-486)||(12235462-12235577)
chr6 (357-440)||(8365442-8365525)
chr6 (363-434)||(4877991-4878061)
chr6 (363-440)||(16766750-16766827)
chr6 (363-408)||(6389806-6389851)
chr6 (358-410)||(12868611-12868664)
chr6 (436-504)||(7569176-7569244)
chr6 (361-440)||(9107297-9107376)
chr6 (360-412)||(28648353-28648405)
chr6 (359-434)||(34595182-34595257)
chr6 (439-486)||(7625123-7625170)
chr6 (366-412)||(9025448-9025495)
chr6 (425-511)||(30781291-30781377)
chr6 (221-254)||(4889131-4889164)
chr6 (363-435)||(10339054-10339126)
chr6 (365-479)||(26178620-26178732)
chr6 (363-434)||(28152146-28152217)
chr6 (363-434)||(28715343-28715414)
[»] scaffold0003 (1 HSPs)
scaffold0003 (360-440)||(241647-241727)
[»] scaffold0057 (1 HSPs)
scaffold0057 (363-439)||(24078-24155)
[»] scaffold0652 (1 HSPs)
scaffold0652 (364-434)||(403-473)
[»] scaffold0199 (1 HSPs)
scaffold0199 (428-486)||(1950-2008)
[»] scaffold0793 (1 HSPs)
scaffold0793 (360-410)||(4818-4869)
[»] scaffold0598 (1 HSPs)
scaffold0598 (427-484)||(8052-8109)
[»] scaffold0450 (1 HSPs)
scaffold0450 (360-440)||(8561-8641)
[»] scaffold0019 (1 HSPs)
scaffold0019 (363-439)||(71779-71855)


Alignment Details
Target: chr7 (Bit Score: 201; Significance: 1e-109; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 156 - 486
Target Start/End: Complemental strand, 23752223 - 23751901
Alignment:
Q  156 ttctcaaacactctgaaccaacacaaatacttataacgataattaactaccaatcagttaaactgatttaaaaagtaattgaaccgatctaaaaaatgtt 255  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  23752223 ttctcaaacactctgaaccaacacaaatacttctaacgataattaactaccaatcagttaaactgatttaaaaagtgattgaaccgatctaaaaaatgtt 23752124  T
Q  256 gccacttaactaccgnnnnnnngggtgagcatcagttataacggcctctcagccatccatagttggannnnnnnnc-ctcaatcagaggttgtttaaaga 354  Q
    |||||||||||||||       ||||||||| ||||  |||||||||||||||||||||||||||||        | |||||| ||||||||||||||||    
T  23752123 gccacttaactaccgtttttttgggtgagcaacagt--taacggcctctcagccatccatagttggattttttttctctcaattagaggttgtttaaaga 23752026  T
Q  355 gcaacaatctatgaagcacggacacttaccggattaggcgtgtcccgtgtcggacacgcgtcggtgtccaacaccgacacgacacctatgattaaacaaa 454  Q
    ||||| ||||||||||||| |||||||| |||||||||||||||||||||| |||||||||||||||      ||||||||||||||||||||| || ||    
T  23752025 gcaac-atctatgaagcacagacacttatcggattaggcgtgtcccgtgtctgacacgcgtcggtgt------ccgacacgacacctatgattacactaa 23751933  T
Q  455 attatatcattttatcaaattattatccgtgt 486  Q
    ||||||||||||||||||||||||||||||||    
T  23751932 attatatcattttatcaaattattatccgtgt 23751901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 363 - 486
Target Start/End: Original strand, 4017729 - 4017852
Alignment:
Q  363 ctatgaagcacggacacttaccggattaggcgtgtcccgtgtcggacacgcgtcggtgtccaacaccgacacgacacctatgattaaacaaaattatatc 462  Q
    |||||||||||| ||||||    |||||||||||| ||||||| ||||| ||||||||||| ||||| ||||||||| |||||||| || ||||||||||    
T  4017729 ctatgaagcacgaacactttttagattaggcgtgttccgtgtcagacacacgtcggtgtccgacaccaacacgacacttatgattacactaaattatatc 4017828  T
Q  463 attttatcaaattattatccgtgt 486  Q
     |||| ||||||||||||||||||    
T  4017829 gttttctcaaattattatccgtgt 4017852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 363 - 501
Target Start/End: Original strand, 29812598 - 29812737
Alignment:
Q  363 ctatgaagcacggacacttaccggattaggcgtgtcccgtgtcggacac-gcgtcggtgtccaacaccgacacgacacctatgattaaacaaaattatat 461  Q
    |||||||||||||||||||  ||||||||||||||||||||||||   | |   | |   || |||||||||||||||||||||||| || |||||||||    
T  29812598 ctatgaagcacggacacttctcggattaggcgtgtcccgtgtcggtgtccgacaccgacaccgacaccgacacgacacctatgattacactaaattatat 29812697  T
Q  462 cattttatcaaattattatccgtgttggtgtccgtgtcgt 501  Q
    |||||| |||||||||||| || || ||||||||||||||    
T  29812698 cattttctcaaattattatacgggtcggtgtccgtgtcgt 29812737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 363 - 492
Target Start/End: Original strand, 7133212 - 7133342
Alignment:
Q  363 ctatgaagcacggacacttaccggattaggcgtgtccc-gtgtcggacacgcgtcggtgtccaacaccgacacgacacctatgattaaacaaaattatat 461  Q
    ||||||||||||||| ||   | ||||||| ||||||| ||||||||||||||||||||||| ||||||||||  |||||||||||| ||  |||||| |    
T  7133212 ctatgaagcacggacgctcctcagattaggtgtgtcccagtgtcggacacgcgtcggtgtccgacaccgacacaccacctatgattacactgaattatgt 7133311  T
Q  462 cattttatcaaattattatccgtgttggtgt 492  Q
    |||||| ||||||||| ||| |||| |||||    
T  7133312 cattttctcaaattatcatctgtgtcggtgt 7133342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 401 - 486
Target Start/End: Complemental strand, 23930305 - 23930220
Alignment:
Q  401 gtgtcggacacgcgtcggtgtccaacaccgacacgacacctatgattaaacaaaattatatcattttatcaaattattatccgtgt 486  Q
    ||||||||||||| ||||| ||| |||||||||| ||||||||||||| ||  |||||| ||||||| |||||||| |||||||||    
T  23930305 gtgtcggacacgcatcggtatccgacaccgacacaacacctatgattacactgaattatgtcattttctcaaattactatccgtgt 23930220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 362 - 486
Target Start/End: Original strand, 38804488 - 38804613
Alignment:
Q  362 tctatgaagcacggacacttaccggattaggcgtgtcccgt-gtcggacacgcgtcggtgtccaacaccgacacgacacctatgattaaacaaaattata 460  Q
    ||||||||||||  |||||   |||||||||| |||||||  ||||||||| ||||||||||| ||||| ||||||||||||||||||  |   |||||     
T  38804488 tctatgaagcacatacactcctcggattaggcatgtcccggcgtcggacacacgtcggtgtccgacaccaacacgacacctatgattaccctggattatg 38804587  T
Q  461 tcattttatcaaattattatccgtgt 486  Q
    ||||||| | ||||||||||||||||    
T  38804588 tcattttctgaaattattatccgtgt 38804613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 401 - 482
Target Start/End: Complemental strand, 5938558 - 5938477
Alignment:
Q  401 gtgtcggacacgcgtcggtgtccaacaccgacacgacacctatgattaaacaaaattatatcattttatcaaattattatcc 482  Q
    ||||||||||||| ||||||||  |||||||||| |||||||| |||| ||  |||||| | ||||||||||||||||||||    
T  5938558 gtgtcggacacgcatcggtgtctgacaccgacacaacacctataattatactgaattatgttattttatcaaattattatcc 5938477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 405 - 482
Target Start/End: Original strand, 17780061 - 17780138
Alignment:
Q  405 cggacacgcgtcggtgtccaacaccgacacgacacctatgattaaacaaaattatatcattttatcaaattattatcc 482  Q
    ||||||||||||||||| | ||||||||||||||||||| |||| | | |||||| ||||||| | ||||||||||||    
T  17780061 cggacacgcgtcggtgttcgacaccgacacgacacctattattacatagaattatgtcattttcttaaattattatcc 17780138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 358 - 440
Target Start/End: Complemental strand, 24339777 - 24339695
Alignment:
Q  358 acaatctatgaagcacggacacttaccggattaggcgtgtccc-gtgtcggacacgcgtcggtgtccaacaccgacacgacacc 440  Q
    |||||||||||||||||| ||||   ||||||||||||||||| |||||||| ||| ||| |||||| ||||||||||||||||    
T  24339777 acaatctatgaagcacgggcactcctcggattaggcgtgtcccggtgtcggatacgtgtc-gtgtccgacaccgacacgacacc 24339695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 363 - 434
Target Start/End: Complemental strand, 598327 - 598256
Alignment:
Q  363 ctatgaagcacggacacttaccggattaggcgtgtccc-gtgtcggacacgcgtcggtgtccaacaccgacac 434  Q
    |||||||||||||||||||  ||||||||||||||||| |||||||||||| ||| |||||  ||||||||||    
T  598327 ctatgaagcacggacacttctcggattaggcgtgtcccggtgtcggacacgtgtc-gtgtctgacaccgacac 598256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 363 - 478
Target Start/End: Original strand, 41229237 - 41229348
Alignment:
Q  363 ctatgaagcacggacacttaccggattaggcgtgtc-ccgtgtcggacacgcgtcggtgtccaacaccgacacgacacctatgattaaacaaaattatat 461  Q
    |||||||||||||||||||  |  |||||||||||| | ||| ||||||||||| ||||||| ||||     |||| |||||||||| ||| |||||| |    
T  41229237 ctatgaagcacggacacttctcatattaggcgtgtcgcagtgacggacacgcgttggtgtccgacac-----cgacgcctatgattatacagaattatgt 41229331  T
Q  462 cattttatcaaattatt 478  Q
    |||||| ||||||||||    
T  41229332 cattttctcaaattatt 41229348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 368 - 486
Target Start/End: Complemental strand, 43250118 - 43249994
Alignment:
Q  368 aagcacggacacttaccggattaggcgtgtcccg-tgtcggacacgcgtcggtgtccaac-----accgacacgacacctatgattaaacaaaattatat 461  Q
    |||||||||||||   || ||||||||||||| | ||||||||||||||| |||||| ||     ||||||||||||| ||| |||| ||   ||||| |    
T  43250118 aagcacggacactcctcgaattaggcgtgtcctggtgtcggacacgcgtcagtgtccgacgcgacaccgacacgacacttataattacactgtattatgt 43250019  T
Q  462 cattttatcaaattattatccgtgt 486  Q
    |||||| ||||||||||||||||||    
T  43250018 cattttctcaaattattatccgtgt 43249994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 363 - 417
Target Start/End: Original strand, 43027404 - 43027459
Alignment:
Q  363 ctatgaagcacggacacttaccggattaggcgtgtccc-gtgtcggacacgcgtcg 417  Q
    |||||||||||||||||| | ||||||||||||||||| |||||||||||| ||||    
T  43027404 ctatgaagcacggacactcatcggattaggcgtgtcccggtgtcggacacgtgtcg 43027459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 362 - 434
Target Start/End: Complemental strand, 21880272 - 21880200
Alignment:
Q  362 tctatgaagcacggacacttaccggattaggcgtgtcc-cgtgtcggacacgcgtcggtgtccaacaccgacac 434  Q
    ||||||||||||||||||||  ||||||||||||||||  |||||||||| | ||| |||||| ||||||||||    
T  21880272 tctatgaagcacggacacttctcggattaggcgtgtcctggtgtcggacatgtgtc-gtgtccgacaccgacac 21880200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 431 - 499
Target Start/End: Original strand, 22683758 - 22683826
Alignment:
Q  431 acacgacacctatgattaaacaaaattatatcattttatcaaattattatccgtgttggtgtccgtgtc 499  Q
    |||||||||||||||||  ||  ||||||||||| || |||||||||||||||| | |||||| |||||    
T  22683758 acacgacacctatgattgcactgaattatatcatattctcaaattattatccgtctcggtgtcggtgtc 22683826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 363 - 417
Target Start/End: Original strand, 5409771 - 5409826
Alignment:
Q  363 ctatgaagcacggacacttaccggattaggcgtgtccc-gtgtcggacacgcgtcg 417  Q
    ||||||||||||||||||   ||||||||||||||||| |||||||||||| ||||    
T  5409771 ctatgaagcacggacactcctcggattaggcgtgtcccggtgtcggacacgtgtcg 5409826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 385 - 492
Target Start/End: Complemental strand, 12278932 - 12278830
Alignment:
Q  385 ggattaggcgtgtcccg-tgtcggacacgcgtcggtgtccaacaccgacacgacacctatgattaaacaaaattatatcattttatcaaattattatccg 483  Q
    |||||||| |||||||| |||| ||||||||| |||||||      |||||||||| ||| |||| ||  |||||| ||||||| | ||||||||||| |    
T  12278932 ggattaggtgtgtcccggtgtcagacacgcgttggtgtcc------gacacgacacatataattacactgaattatgtcattttcttaaattattatcag 12278839  T
Q  484 tgttggtgt 492  Q
    |||||||||    
T  12278838 tgttggtgt 12278830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 88; Significance: 5e-42; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 372 - 499
Target Start/End: Complemental strand, 43554636 - 43554510
Alignment:
Q  372 acggacacttaccggattaggcgtgtcccgtgtcggacacgcgtcggtgtccaacaccgacacgacacctatgattaaacaaaattatatcattttatca 471  Q
    ||||||||||  |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || ||||||||||||||| |||    
T  43554636 acggacacttctcggattaggcgtgtcccgtgtcggacacgcgtcggtgtccgacaccgacacgacacctatgattacactaaattatatcattttctca 43554537  T
Q  472 aattattatccgtgttggtgtccgtgtc 499  Q
    ||||||||| |||| | |||||||||||    
T  43554536 aattattatacgtg-tcgtgtccgtgtc 43554510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 367 - 467
Target Start/End: Original strand, 36577616 - 36577715
Alignment:
Q  367 gaagcacggacacttaccggattaggcgtgtcccgtgtcggacacgcgtcggtgtccaacaccgacacgacacctatgattaaacaaaattatatcattt 466  Q
    ||||||| |||||||   ||||||||||| |||||||||||| |||| ||||||| | ||||||||||||||| ||| |||| || ||||||||||||||    
T  36577616 gaagcacagacacttcttggattaggcgtatcccgtgtcggatacgcatcggtgt-cgacaccgacacgacacatataattatactaaattatatcattt 36577714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 425 - 493
Target Start/End: Original strand, 39695996 - 39696064
Alignment:
Q  425 acaccgacacgacacctatgattaaacaaaattatatcattttatcaaattattatccgtgttggtgtc 493  Q
    |||||||||||||||||||||||| || ||||||||||||||| |||||||||| || |||| ||||||    
T  39695996 acaccgacacgacacctatgattacactaaattatatcattttctcaaattattgtcggtgtcggtgtc 39696064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 363 - 473
Target Start/End: Original strand, 26205694 - 26205805
Alignment:
Q  363 ctatgaagcacggacacttaccggattaggcgtgtcccg-tgtcggacacgcgtcggtgtccaacaccgacacgacacctatgattaaacaaaattatat 461  Q
    ||||||||||||||||| |   |||||| | |||||||| ||||||| |||||| ||||||| ||||| |||||||||||||||||| ||  |||||| |    
T  26205694 ctatgaagcacggacaccttttggattacgtgtgtcccggtgtcggatacgcgttggtgtccgacaccaacacgacacctatgattacactgaattatgt 26205793  T
Q  462 cattttatcaaa 473  Q
    |||||| |||||    
T  26205794 cattttctcaaa 26205805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 363 - 433
Target Start/End: Complemental strand, 17123166 - 17123097
Alignment:
Q  363 ctatgaagcacggacacttaccggattaggcgtgtcccgtgtcggacacgcgtcggtgtccaacaccgaca 433  Q
    ||||||||||||||||||   ||||||||||||||||||||||||||| |  || ||||||||||||||||    
T  17123166 ctatgaagcacggacactcctcggattaggcgtgtcccgtgtcggacatgtttc-gtgtccaacaccgaca 17123097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 401 - 480
Target Start/End: Complemental strand, 25863290 - 25863211
Alignment:
Q  401 gtgtcggacacgcgtcggtgtccaacaccgacacgacacctatgattaaacaaaattatatcattttatcaaattattat 480  Q
    ||||| ||||||| |||||| || |||| |||||||||| ||| |||| ||  |||||||||||||| ||||||||||||    
T  25863290 gtgtcagacacgcatcggtgcccgacactgacacgacacttataattacactgaattatatcattttctcaaattattat 25863211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 365 - 489
Target Start/End: Original strand, 7997108 - 7997227
Alignment:
Q  365 atgaagcacggacacttaccggattaggcgtgtcccg-tgtcggacacgcgtcggtgtccaacaccgacacgacacctatgattaaacaaaattatatca 463  Q
    |||||||||  ||||||  || |||||| |||||| | ||||||||||||||| ||||||      |||||||||| ||| |||| ||   |||||||||    
T  7997108 atgaagcacaaacacttctcgaattaggtgtgtcctgatgtcggacacgcgtcagtgtcc------gacacgacacttataattacactgtattatatca 7997201  T
Q  464 ttttatcaaattattatccgtgttgg 489  Q
    |||| |||||||||||||||||||||    
T  7997202 ttttctcaaattattatccgtgttgg 7997227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 405 - 479
Target Start/End: Original strand, 14574027 - 14574100
Alignment:
Q  405 cggacacgcgtcggtgtccaacaccgacacgacacctatgattaaacaaaattatatcattttatcaaattatta 479  Q
    |||||||||||||| |||| |||| ||||||| |||||| |||| ||  ||||||||||||| ||||||||||||    
T  14574027 cggacacgcgtcggcgtccgacactgacacga-acctataattacactgaattatatcatttcatcaaattatta 14574100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 363 - 435
Target Start/End: Complemental strand, 2419986 - 2419913
Alignment:
Q  363 ctatgaagcacggacacttaccggattaggcgtgtccc-gtgtcggacacgcgtcggtgtccaacaccgacacg 435  Q
    |||||||||||||||||| | ||||||||| ||||||| | ||||||||||| ||||||||  ||||| |||||    
T  2419986 ctatgaagcacggacactcatcggattaggtgtgtcccggggtcggacacgcatcggtgtctgacaccaacacg 2419913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 366 - 434
Target Start/End: Original strand, 39268541 - 39268609
Alignment:
Q  366 tgaagcacggacacttaccggattaggcgtgtccc-gtgtcggacacgcgtcggtgtccaacaccgacac 434  Q
    |||||||||||||||   ||||||||||||||||| |||||||||||  ||| |||||||||||||||||    
T  39268541 tgaagcacggacactcctcggattaggcgtgtcccagtgtcggacacatgtc-gtgtccaacaccgacac 39268609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 425 - 481
Target Start/End: Original strand, 5467975 - 5468031
Alignment:
Q  425 acaccgacacgacacctatgattaaacaaaattatatcattttatcaaattattatc 481  Q
    ||||||||||||||||||| |||| ||  |||||| | |||||||||||||||||||    
T  5467975 acaccgacacgacacctataattacactgaattatgtgattttatcaaattattatc 5468031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 363 - 434
Target Start/End: Complemental strand, 43565000 - 43564929
Alignment:
Q  363 ctatgaagcacggacacttaccggattaggcgtgtccc-gtgtcggacacgcgtcggtgtccaacaccgacac 434  Q
    |||||||||||||||||||  ||||||||||||||||| | |||||||||  ||| |||||| ||||||||||    
T  43565000 ctatgaagcacggacacttctcggattaggcgtgtcccggcgtcggacacatgtc-gtgtccgacaccgacac 43564929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 386 - 447
Target Start/End: Complemental strand, 21137789 - 21137729
Alignment:
Q  386 gattaggcgtgtcccg-tgtcggacacgcgtcggtgtccaacaccgacacgacacctatgatt 447  Q
    ||||||| |||||||| |||||||||||||| ||||||| ||  |||||||||||||||||||    
T  21137789 gattaggtgtgtcccggtgtcggacacgcgttggtgtccgac--cgacacgacacctatgatt 21137729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 422 - 492
Target Start/End: Original strand, 18607091 - 18607161
Alignment:
Q  422 ccaacaccgacacgacacctatgattaaacaaaattatatcattttatcaaattattatccgtgttggtgt 492  Q
    ||||||| ||||||||||||||||||| |   |||||| | ||||| |||||||||||||| ||| |||||    
T  18607091 ccaacacagacacgacacctatgattacattgaattatgttattttctcaaattattatccatgtcggtgt 18607161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 363 - 440
Target Start/End: Complemental strand, 21522880 - 21522803
Alignment:
Q  363 ctatgaagcacggacacttaccggattaggcgtgtcccg-tgtcggacacgcgtcggtgtccaacaccgacacgacacc 440  Q
    |||||| |||||||||||    ||||||||||||||||| || |||||||| |||| ||||| ||||||||||||||||    
T  21522880 ctatgatgcacggacactctttggattaggcgtgtcccggtgccggacacgtgtcg-tgtccgacaccgacacgacacc 21522803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 363 - 440
Target Start/End: Complemental strand, 21533446 - 21533369
Alignment:
Q  363 ctatgaagcacggacacttaccggattaggcgtgtcccg-tgtcggacacgcgtcggtgtccaacaccgacacgacacc 440  Q
    |||||| |||||||||||    ||||||||||||||||| || |||||||| |||| ||||| ||||||||||||||||    
T  21533446 ctatgatgcacggacactctttggattaggcgtgtcccggtgccggacacgtgtcg-tgtccgacaccgacacgacacc 21533369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 367 - 479
Target Start/End: Complemental strand, 23221099 - 23220991
Alignment:
Q  367 gaagcacggacacttaccggattaggcgtgtccc-gtgtcggacacgcgtcggtgtccaacaccgacacgacacctatgattaaacaaaattatatcatt 465  Q
    ||||||||||  || | ||||||||||||||||| |||| |||||||| | | ||||||||||||||||      |||||| | || ||||||| | |||    
T  23221099 gaagcacggatgctcatcggattaggcgtgtcccagtgttggacacgcattgatgtccaacaccgacaca-----tatgataacactaaattatgtgatt 23221005  T
Q  466 ttatcaaattatta 479  Q
    ||||||||||||||    
T  23221004 ttatcaaattatta 23220991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 387 - 440
Target Start/End: Original strand, 36642716 - 36642768
Alignment:
Q  387 attaggcgtgtcccgtgtcggacacgcgtcggtgtccaacaccgacacgacacc 440  Q
    |||||||||||||||||||||||||| ||| |||||| ||||| ||| ||||||    
T  36642716 attaggcgtgtcccgtgtcggacacgtgtc-gtgtccgacaccaacatgacacc 36642768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 363 - 439
Target Start/End: Complemental strand, 39698671 - 39698595
Alignment:
Q  363 ctatgaagcacggacacttaccggattaggcgtgtc-ccgtgtcggacacgcgtcggtgtccaacaccgacacgacac 439  Q
    ||||||||||||||||||   ||||||||||||||| | |||||||| ||  ||| |||||| |||||||||||||||    
T  39698671 ctatgaagcacggacactcctcggattaggcgtgtctcggtgtcggatacatgtc-gtgtccgacaccgacacgacac 39698595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 363 - 434
Target Start/End: Original strand, 17393305 - 17393377
Alignment:
Q  363 ctatgaagcacggacacttaccggattaggcgtgtcccg-tgtcggacacgcgtcggtgtccaacaccgacac 434  Q
    |||||||||||| ||| |   ||||||| | |||||||| |||||||||| |||||||||||| |||||||||    
T  17393305 ctatgaagcacgaacattcctcggattacgagtgtcccggtgtcggacacacgtcggtgtccaccaccgacac 17393377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 385 - 440
Target Start/End: Complemental strand, 21542138 - 21542083
Alignment:
Q  385 ggattaggcgtgtcccg-tgtcggacacgcgtcggtgtccaacaccgacacgacacc 440  Q
    ||||| ||||||||||| ||||||||||| |||| ||||| ||||||||||||||||    
T  21542138 ggattcggcgtgtcccggtgtcggacacgtgtcg-tgtccgacaccgacacgacacc 21542083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 363 - 434
Target Start/End: Original strand, 21576685 - 21576756
Alignment:
Q  363 ctatgaagcacggacacttaccggattaggcgtgtccc-gtgtcggacacgcgtcggtgtccaacaccgacac 434  Q
    ||||||||||||||||||   ||||||||||||||||| ||||| |||||| ||| |||||| ||| ||||||    
T  21576685 ctatgaagcacggacactcctcggattaggcgtgtcccagtgtcagacacgtgtc-gtgtccgacatcgacac 21576756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 438 - 486
Target Start/End: Complemental strand, 42469270 - 42469222
Alignment:
Q  438 acctatgattaaacaaaattatatcattttatcaaattattatccgtgt 486  Q
    ||||||||||| || ||| ||| ||||||| ||||||||||||||||||    
T  42469270 acctatgattacactaaaatatgtcattttctcaaattattatccgtgt 42469222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 81; Significance: 7e-38; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 361 - 493
Target Start/End: Original strand, 3144585 - 3144717
Alignment:
Q  361 atctatgaagcacggacacttaccggattaggcgtgtcccgtgtcggacacgcgtcggtgtccaacaccgacacgacacctatgattaaacaaaattata 460  Q
    |||||||||||||||||||||  ||||||||| ||||| ||||| |||||||||| ||||||  |||||||||||||||||||||||| || ||||||||    
T  3144585 atctatgaagcacggacacttctcggattaggtgtgtctcgtgttggacacgcgttggtgtctgacaccgacacgacacctatgattacactaaattata 3144684  T
Q  461 tcattttatcaaattattatccgtgttggtgtc 493  Q
    ||||||| | |||||||||||||||| ||||||    
T  3144685 tcattttctgaaattattatccgtgtaggtgtc 3144717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 361 - 486
Target Start/End: Complemental strand, 24343634 - 24343508
Alignment:
Q  361 atctatgaagcacggacacttaccggattaggcgtgtcccg-tgtcggacacgcgtcggtgtccaacaccgacacgacacctatgattaaacaaaattat 459  Q
    ||||||||||||||||||||   | || ||||||||||||| |||||||||||||||||||||  ||||||||||||||||||| |||| ||  ||||||    
T  24343634 atctatgaagcacggacactcctcagaataggcgtgtcccggtgtcggacacgcgtcggtgtcggacaccgacacgacacctataattacactgaattat 24343535  T
Q  460 atcattttatcaaattattatccgtgt 486  Q
     | ||||| ||||||||||||||||||    
T  24343534 gtaattttctcaaattattatccgtgt 24343508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 367 - 486
Target Start/End: Original strand, 20743210 - 20743336
Alignment:
Q  367 gaagcacggacacttaccggattaggcgtgtcccg-tgtcggacacgcgtcggtgtc------caacaccgacacgacacctatgattaaacaaaattat 459  Q
    |||||||||||||| | ||||||||  |||| ||| ||||||||||| |||||||||      | |||||||||| ||||||||||||| ||  ||||||    
T  20743210 gaagcacggacactcatcggattagatgtgttccggtgtcggacacgtgtcggtgtctgacatcgacaccgacacaacacctatgattacactgaattat 20743309  T
Q  460 atcattttatcaaattattatccgtgt 486  Q
     ||||||| ||||||||||||||||||    
T  20743310 gtcattttctcaaattattatccgtgt 20743336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 363 - 448
Target Start/End: Original strand, 53381530 - 53381616
Alignment:
Q  363 ctatgaagcacggacacttaccggattaggcgtgtcccg-tgtcggacacgcgtcggtgtccaacaccgacacgacacctatgatta 448  Q
    ||||||||||||||||||   ||||||||| |||||||| ||||||| ||||||| |||||| ||||||||||||| ||||| ||||    
T  53381530 ctatgaagcacggacactcctcggattaggtgtgtcccggtgtcggatacgcgtcagtgtccgacaccgacacgacgcctataatta 53381616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 363 - 467
Target Start/End: Complemental strand, 23386277 - 23386166
Alignment:
Q  363 ctatgaagcacggacacttaccggattaggcgtgtcccgtgtcggacacgcgtc-------ggtgtccaacaccgacacgacacctatgattaaacaaaa 455  Q
    ||||||||||||||||||   | |||||||| |||||| |||||||||||| ||       ||||||| ||||||||| |||||||||||||| || |||    
T  23386277 ctatgaagcacggacactcctctgattaggcatgtcccttgtcggacacgcatcacacattggtgtccgacaccgacatgacacctatgattacactaaa 23386178  T
Q  456 ttatatcatttt 467  Q
    ||||||||||||    
T  23386177 ttatatcatttt 23386166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 363 - 486
Target Start/End: Original strand, 18513175 - 18513299
Alignment:
Q  363 ctatgaagcacggacacttaccggattaggcgtgtcc-cgtgtcggacacgcgtcggtgtccaacaccgacac-gacacctatgattaaacaaaattata 460  Q
    ||||||||||||||||||   | ||||||||||||||  ||||||||||| ||||||||||| ||| | |||| ||||| |||||||| |   ||||||     
T  18513175 ctatgaagcacggacactcctcagattaggcgtgtcctggtgtcggacacacgtcggtgtccgaca-caacactgacacatatgattacattgaattatg 18513273  T
Q  461 tcattttatcaaattattatccgtgt 486  Q
    ||||||| ||||||||||||| ||||    
T  18513274 tcattttctcaaattattatcggtgt 18513299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 363 - 434
Target Start/End: Original strand, 23292926 - 23292997
Alignment:
Q  363 ctatgaagcacggacacttaccggattaggcgtgtccc-gtgtcggacacgcgtcggtgtccaacaccgacac 434  Q
    ||||||||||||||||||   ||||||||||||||||| |||||||||||| ||| |||||| ||||||||||    
T  23292926 ctatgaagcacggacactcctcggattaggcgtgtcccggtgtcggacacgtgtc-gtgtccgacaccgacac 23292997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 436 - 504
Target Start/End: Original strand, 47191001 - 47191069
Alignment:
Q  436 acacctatgattaaacaaaattatatcattttatcaaattattatccgtgttggtgtccgtgtcgtatc 504  Q
    ||||||| ||||| || ||||||| |||||||  ||||||||||||| ||| |||||||||||||||||    
T  47191001 acacctaggattacactaaattatgtcattttcgcaaattattatccatgtcggtgtccgtgtcgtatc 47191069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 363 - 440
Target Start/End: Complemental strand, 19482798 - 19482721
Alignment:
Q  363 ctatgaagcacggacacttaccggattaggcgtgtccc-gtgtcggacacgcgtcggtgtccaacaccgacacgacacc 440  Q
    |||||||||||| |||||   ||||||||| ||||||| |||||||||||| |||| ||||||| ||||||||||||||    
T  19482798 ctatgaagcacgaacactcctcggattaggtgtgtcccagtgtcggacacgtgtcg-tgtccaataccgacacgacacc 19482721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 422 - 480
Target Start/End: Original strand, 31243542 - 31243600
Alignment:
Q  422 ccaacaccgacacgacacctatgattaaacaaaattatatcattttatcaaattattat 480  Q
    |||||||||||| |||||||||||||| ||  |||||| ||||||| ||||||||||||    
T  31243542 ccaacaccgacatgacacctatgattacactgaattatgtcattttctcaaattattat 31243600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 364 - 440
Target Start/End: Original strand, 30982808 - 30982884
Alignment:
Q  364 tatgaagcacggacacttaccggattaggcgtgtccc-gtgtcggacacgcgtcggtgtccaacaccgacacgacacc 440  Q
    |||||||||||||||||    |||||||||||||||| |||||||||||| ||| |||||  ||||||||||||||||    
T  30982808 tatgaagcacggacactctttggattaggcgtgtcccggtgtcggacacgtgtc-gtgtctgacaccgacacgacacc 30982884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 386 - 457
Target Start/End: Original strand, 944625 - 944697
Alignment:
Q  386 gattaggcgtgtcccg-tgtcggacacgcgtcggtgtccaacaccgacacgacacctatgattaaacaaaatt 457  Q
    ||||||| |||||||| ||||||||||||||| |||| | |||| |||||||||||||| |||| || |||||    
T  944625 gattaggtgtgtcccggtgtcggacacgcgtctgtgttcgacactgacacgacacctataattacactaaatt 944697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 207 - 251
Target Start/End: Original strand, 4926649 - 4926693
Alignment:
Q  207 aatcagttaaactgatttaaaaagtaattgaaccgatctaaaaaa 251  Q
    ||||||||||||||||||||||||| |||  ||||||||||||||    
T  4926649 aatcagttaaactgatttaaaaagtgatttgaccgatctaaaaaa 4926693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 360 - 410
Target Start/End: Original strand, 715542 - 715593
Alignment:
Q  360 aatctatgaagcacggacacttaccggattaggcgtgtccc-gtgtcggaca 410  Q
    |||||||||||||||||||||   ||||||||||||||||| ||||||||||    
T  715542 aatctatgaagcacggacactcctcggattaggcgtgtccctgtgtcggaca 715593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 360 - 410
Target Start/End: Original strand, 752868 - 752919
Alignment:
Q  360 aatctatgaagcacggacacttaccggattaggcgtgtccc-gtgtcggaca 410  Q
    |||||||||||||||||||||   ||||||||||||||||| ||||||||||    
T  752868 aatctatgaagcacggacactcctcggattaggcgtgtccctgtgtcggaca 752919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 363 - 486
Target Start/End: Complemental strand, 7012197 - 7012067
Alignment:
Q  363 ctatgaagcacggacacttaccggattaggcgtgtcccg-tgtcggacacgcgtcggtgtccaacaccgaca------cgacacctatgattaaacaaaa 455  Q
    ||||||||||||||||||   || |||||| ||  |||| ||||||| |||||||||||||| |||||||||      ||| ||||||||| | ||  ||    
T  7012197 ctatgaagcacggacactcctcgcattaggtgttccccggtgtcggatacgcgtcggtgtccgacaccgacacaacaccgatacctatgatcacactgaa 7012098  T
Q  456 ttatatcattttatcaaattattatccgtgt 486  Q
    |||| ||||||| ||||||||||||| ||||    
T  7012097 ttatgtcattttctcaaattattatcggtgt 7012067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 387 - 478
Target Start/End: Complemental strand, 6274050 - 6273953
Alignment:
Q  387 attaggcgtgtcccgtgtcggacacgcgtcggtgtc------caacaccgacacgacacctatgattaaacaaaattatatcattttatcaaattatt 478  Q
    ||||||||||||  |||||||||| |||||| ||||      | |||||||||||||  |||| |||| || ||||||||||||||| ||||||||||    
T  6274050 attaggcgtgtcttgtgtcggacatgcgtcgatgtctgacaccgacaccgacacgacgactataattacactaaattatatcattttctcaaattatt 6273953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 454 - 499
Target Start/End: Complemental strand, 29205477 - 29205432
Alignment:
Q  454 aattatatcattttatcaaattattatccgtgttggtgtccgtgtc 499  Q
    |||||| | ||||| ||||||||||| |||||||||||||||||||    
T  29205477 aattatgtgattttttcaaattattagccgtgttggtgtccgtgtc 29205432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 361 - 409
Target Start/End: Complemental strand, 37203373 - 37203324
Alignment:
Q  361 atctatgaagcacggacacttaccggattaggcgtgtccc-gtgtcggac 409  Q
    |||||||||||||||||||||  |||||||| |||||||| |||||||||    
T  37203373 atctatgaagcacggacacttctcggattagacgtgtcccggtgtcggac 37203324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 384 - 412
Target Start/End: Original strand, 11326592 - 11326620
Alignment:
Q  384 cggattaggcgtgtcccgtgtcggacacg 412  Q
    |||||||||||||||||||||||||||||    
T  11326592 cggattaggcgtgtcccgtgtcggacacg 11326620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 363 - 399
Target Start/End: Original strand, 18844423 - 18844459
Alignment:
Q  363 ctatgaagcacggacacttaccggattaggcgtgtcc 399  Q
    |||||||||||||||||||  ||||||||||||||||    
T  18844423 ctatgaagcacggacacttctcggattaggcgtgtcc 18844459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 361 - 401
Target Start/End: Complemental strand, 36635451 - 36635411
Alignment:
Q  361 atctatgaagcacggacacttaccggattaggcgtgtcccg 401  Q
    ||||||||||||||||||||   ||||||||||||||||||    
T  36635451 atctatgaagcacggacactcttcggattaggcgtgtcccg 36635411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 438 - 478
Target Start/End: Original strand, 49659533 - 49659573
Alignment:
Q  438 acctatgattaaacaaaattatatcattttatcaaattatt 478  Q
    ||||||||||| || ||||||||||||||| ||||||||||    
T  49659533 acctatgattacactaaattatatcattttctcaaattatt 49659573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 75; Significance: 3e-34; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 363 - 480
Target Start/End: Complemental strand, 39820547 - 39820436
Alignment:
Q  363 ctatgaagcacggacacttaccggattaggcgtgtcccgtgtcggacacgcgtcggtgtccaacaccgacacgacacctatgattaaacaaaattatatc 462  Q
    |||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||      ||||||||||||||||||||| || ||||||||||    
T  39820547 ctatgaagcacggacacttctcggattaggcgtgtcccgtgtcggacacgcgtcggtgt------ccgacacgacacctatgattacactaaattatatc 39820454  T
Q  463 attttatcaaattattat 480  Q
    ||||| ||||||||||||    
T  39820453 attttctcaaattattat 39820436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 364 - 497
Target Start/End: Original strand, 13009423 - 13009562
Alignment:
Q  364 tatgaagcacggacacttaccggattaggcgtgtcccgtgtcggacacgcgtcggtgtc------caacaccgacacgacacctatgattaaacaaaatt 457  Q
    |||||||||||||| ||    |||||||||||||||||||||||||| |||||||||||      | ||||||||||||||| |||||||| || |||||    
T  13009423 tatgaagcacggacgctccttggattaggcgtgtcccgtgtcggacaggcgtcggtgtctgacacctacaccgacacgacacttatgattacactaaatt 13009522  T
Q  458 atatcattttatcaaattattatccgtgttggtgtccgtg 497  Q
    ||||  |||| |||||||||||||||||| ||||||||||    
T  13009523 atattgttttctcaaattattatccgtgtcggtgtccgtg 13009562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 363 - 486
Target Start/End: Original strand, 30067968 - 30068086
Alignment:
Q  363 ctatgaagcacggacacttaccggattaggcgtgtccc-gtgtcggacacgcgtcggtgtccaacaccgacacgacacctatgattaaacaaaattatat 461  Q
    |||||||||||||||||| | ||||||||| ||||||| ||||||||||| ||||||| |      ||||| || |||||| ||||| ||  |||||| |    
T  30067968 ctatgaagcacggacactcatcggattaggtgtgtcccagtgtcggacacacgtcggtat------ccgactcggcacctacgattatactgaattatgt 30068061  T
Q  462 cattttatcaaattattatccgtgt 486  Q
    |||||| ||||||||||||||||||    
T  30068062 cattttctcaaattattatccgtgt 30068086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 363 - 440
Target Start/End: Original strand, 29510233 - 29510310
Alignment:
Q  363 ctatgaagcacggacacttaccggattaggcgtgtccc-gtgtcggacacgcgtcggtgtccaacaccgacacgacacc 440  Q
    ||||||||||||||||||   ||||||||| ||||||| |||||||||||||||| |||||| |||||||||| |||||    
T  29510233 ctatgaagcacggacactcctcggattaggtgtgtcccggtgtcggacacgcgtc-gtgtccgacaccgacactacacc 29510310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 362 - 501
Target Start/End: Complemental strand, 40064082 - 40063937
Alignment:
Q  362 tctatgaagcacggacacttaccggattaggcgtgtcccg-tgtcggacacgcgtcgg-----tgtccaacaccgacacgacacctatgattaaacaaaa 455  Q
    |||||| ||||||||||||   ||||||||  |||||||| |||||||||| ||||||     |||   ||||||||||||| |||||||||| |   ||    
T  40064082 tctatgtagcacggacactcctcggattagatgtgtcccggtgtcggacacacgtcggcgacgtgttggacaccgacacgacgcctatgattacaatgaa 40063983  T
Q  456 ttatatcattttatcaaattattatccgtgttggtgtccgtgtcgt 501  Q
    |||| ||||||| ||||||||||||  |||| ||||||||||||||    
T  40063982 ttatgtcattttctcaaattattattggtgtcggtgtccgtgtcgt 40063937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 428 - 484
Target Start/End: Original strand, 35431140 - 35431196
Alignment:
Q  428 ccgacacgacacctatgattaaacaaaattatatcattttatcaaattattatccgt 484  Q
    ||||||||||||||||||||| || ||| ||| ||||||| ||||||||||||||||    
T  35431140 ccgacacgacacctatgattacactaaaatatgtcattttctcaaattattatccgt 35431196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 414 - 481
Target Start/End: Complemental strand, 8017559 - 8017492
Alignment:
Q  414 gtcggtgtccaacaccgacacgacacctatgattaaacaaaattatatcattttatcaaattattatc 481  Q
    ||||||||||||||| ||||||||| ||||||||| ||  |||||| ||||||| ||| |||||||||    
T  8017559 gtcggtgtccaacactgacacgacatctatgattacactcaattatgtcattttttcatattattatc 8017492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 425 - 480
Target Start/End: Complemental strand, 13845296 - 13845241
Alignment:
Q  425 acaccgacacgacacctatgattaaacaaaattatatcattttatcaaattattat 480  Q
    |||| |||||||||||||||||||  | ||||||||||||||| ||||||||||||    
T  13845296 acacagacacgacacctatgattactctaaattatatcattttctcaaattattat 13845241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 365 - 486
Target Start/End: Complemental strand, 44067644 - 44067517
Alignment:
Q  365 atgaagcacggacacttaccggattaggcgtgtcc-cgtgtcggacacgcgtcggtgtc-----caacaccgacacgacacctatgattaaacaaaatta 458  Q
    ||||||||||||||||   || |||||||||||||  ||||||||||||| || |||||     | ||||||||||||||| ||| |||| ||   ||||    
T  44067644 atgaagcacggacactcctcgaattaggcgtgtcctggtgtcggacacgcatcagtgtccgacacgacaccgacacgacacttataattacactgtatta 44067545  T
Q  459 tatcattttatcaaattattatccgtgt 486  Q
    | ||||||| ||||||||||||||||||    
T  44067544 tgtcattttctcaaattattatccgtgt 44067517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 428 - 486
Target Start/End: Complemental strand, 1676771 - 1676713
Alignment:
Q  428 ccgacacgacacctatgattaaacaaaattatatcattttatcaaattattatccgtgt 486  Q
    ||||||||||||||||||||| || ||| ||| |||||||  |||||||||||||||||    
T  1676771 ccgacacgacacctatgattacactaaaatatgtcattttcacaaattattatccgtgt 1676713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 363 - 440
Target Start/End: Original strand, 15816058 - 15816135
Alignment:
Q  363 ctatgaagcacggacacttaccggattaggcgtgtccc-gtgtcggacacgcgtcggtgtccaacaccgacacgacacc 440  Q
    |||||||||||||||||||  ||||||||||||||||| ||||||||  || ||| |||||| ||||| ||||||||||    
T  15816058 ctatgaagcacggacacttctcggattaggcgtgtcccggtgtcggattcgtgtc-gtgtccgacaccaacacgacacc 15816135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 363 - 440
Target Start/End: Complemental strand, 22652106 - 22652029
Alignment:
Q  363 ctatgaagcacggacacttaccggattaggcgtgtccc-gtgtcggacacgcgtcggtgtccaacaccgacacgacacc 440  Q
    ||||||||||||||||||   |||||||| |||||||| |||||||||||  ||| |||||| ||||||||||||||||    
T  22652106 ctatgaagcacggacactcctcggattagacgtgtcccggtgtcggacacatgtc-gtgtccgacaccgacacgacacc 22652029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 462 - 520
Target Start/End: Complemental strand, 12627084 - 12627026
Alignment:
Q  462 cattttatcaaattattatccgtgttggtgtccgtgtcgtatctgatgtccatgtctgt 520  Q
    |||||| ||| ||||||||| |||| |||||||||||| | |||| |||||||||||||    
T  12627084 cattttctcacattattatctgtgtcggtgtccgtgtcatgtctggtgtccatgtctgt 12627026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 363 - 439
Target Start/End: Original strand, 34450961 - 34451037
Alignment:
Q  363 ctatgaagcacggacacttaccggattaggcgtgt-cccgtgtcggacacgcgtcggtgtccaacaccgacacgacac 439  Q
    ||||||||||||||||||    |||| |||||||| |||||||| |||||| ||| |||||| |||||||||||||||    
T  34450961 ctatgaagcacggacactccttggataaggcgtgtccccgtgtcagacacgtgtc-gtgtccgacaccgacacgacac 34451037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 418 - 486
Target Start/End: Complemental strand, 3658216 - 3658148
Alignment:
Q  418 gtgtccaacaccgacacgacacctatgattaaacaaaattatatcattttatcaaattattatccgtgt 486  Q
    |||||| ||| | |||||||||||||||||| ||  || || || ||||| ||||||||||||||||||    
T  3658216 gtgtccgacatcaacacgacacctatgattacactgaactacattattttctcaaattattatccgtgt 3658148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 362 - 398
Target Start/End: Original strand, 11927014 - 11927050
Alignment:
Q  362 tctatgaagcacggacacttaccggattaggcgtgtc 398  Q
    ||||||||||||||||||| | |||||||||||||||    
T  11927014 tctatgaagcacggacactcatcggattaggcgtgtc 11927050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 385 - 480
Target Start/End: Original strand, 14513130 - 14513226
Alignment:
Q  385 ggattaggcgtgtcccg-tgtcggacacgcgtcggtgtccaacaccgacacgacacctatgattaaacaaaattatatcattttatcaaattattat 480  Q
    |||||||| |||| ||| ||||||||| |||||||||||  |||||||||| | | |||||||||  |  |||||| | ||||| ||||||||||||    
T  14513130 ggattaggtgtgttccggtgtcggacatgcgtcggtgtctgacaccgacaccaaatctatgattacgctgaattatgtaattttctcaaattattat 14513226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 363 - 434
Target Start/End: Complemental strand, 17751775 - 17751703
Alignment:
Q  363 ctatgaagcacggacacttaccggattaggcgtgtccc-gtgtcggacacgcgtcggtgtccaacaccgacac 434  Q
    ||||||||| ||||||||   ||||||||||||||||| |||||||  | ||||| |||||| ||||||||||    
T  17751775 ctatgaagcgcggacactcctcggattaggcgtgtcccggtgtcggctatgcgtctgtgtccgacaccgacac 17751703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 363 - 434
Target Start/End: Complemental strand, 17760762 - 17760690
Alignment:
Q  363 ctatgaagcacggacacttaccggattaggcgtgtccc-gtgtcggacacgcgtcggtgtccaacaccgacac 434  Q
    ||||||||| ||||||||   ||||||||||||||||| |||||||  | ||||| |||||| ||||||||||    
T  17760762 ctatgaagcgcggacactcctcggattaggcgtgtcccggtgtcggctatgcgtctgtgtccgacaccgacac 17760690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 363 - 434
Target Start/End: Original strand, 24413499 - 24413570
Alignment:
Q  363 ctatgaagcacggacacttaccggattaggcgtgtcccg-tgtcggacacgcgtcggtgtccaacaccgacac 434  Q
    |||||||||||||||||||  |||||||| ||||||||| ||| |||||||| || |||||| |||| |||||    
T  24413499 ctatgaagcacggacacttctcggattagacgtgtcccgctgttggacacgcatc-gtgtccgacactgacac 24413570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 418 - 481
Target Start/End: Original strand, 26799833 - 26799894
Alignment:
Q  418 gtgtccaacaccgacacgacacctatgattaaacaaaattatatcattttatcaaattattatc 481  Q
    |||||||||||||||||||||||||| |||||   ||||||| | ||||| | |||||||||||    
T  26799833 gtgtccaacaccgacacgacacctataattaa--taaattattttattttttaaaattattatc 26799894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 418 - 486
Target Start/End: Original strand, 26915230 - 26915298
Alignment:
Q  418 gtgtccaacaccgacacgacacctatgattaaacaaaattatatcattttatcaaattattatccgtgt 486  Q
    |||||| ||||||||||||||| | |||||| |  ||||||| ||||||| ||||| | ||||||||||    
T  26915230 gtgtccgacaccgacacgacacttgtgattacattaaattatgtcattttctcaaaattttatccgtgt 26915298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 363 - 434
Target Start/End: Original strand, 36450694 - 36450765
Alignment:
Q  363 ctatgaagcacggacacttaccggattaggcgtgtcc-cgtgtcggacacgcgtcggtgtccaacaccgacac 434  Q
    ||||||||||| ||||||   ||||||||||||||||  |||||||||||||||| |||||| ||||| ||||    
T  36450694 ctatgaagcacagacactcctcggattaggcgtgtcctggtgtcggacacgcgtc-gtgtccgacacctacac 36450765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 68; Significance: 4e-30; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 363 - 486
Target Start/End: Original strand, 42004882 - 42005005
Alignment:
Q  363 ctatgaagcacggacacttaccggattaggcgtgtcccgtgtcggacacgcgtcggtgtccaacaccgacacgacacctatgattaaacaaaattatatc 462  Q
    ||||||||||||||||||   || |||||||||||   |||||||||| |||||||||||| |||||||||| ||||||||||||| || ||||||| ||    
T  42004882 ctatgaagcacggacactcttcgaattaggcgtgtttagtgtcggacatgcgtcggtgtccgacaccgacacaacacctatgattacactaaattatgtc 42004981  T
Q  463 attttatcaaattattatccgtgt 486  Q
    ||||| ||||||||||||||||||    
T  42004982 attttctcaaattattatccgtgt 42005005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 401 - 488
Target Start/End: Original strand, 6936373 - 6936460
Alignment:
Q  401 gtgtcggacacgcgtcggtgtccaacaccgacacgacacctatgattaaacaaaattatatcattttatcaaattattatccgtgttg 488  Q
    |||||||| | |||||||||||| |||| ||||||||||||||||||| ||  |||||| ||||||| ||| ||||||||||||||||    
T  6936373 gtgtcggatatgcgtcggtgtccgacacagacacgacacctatgattacacttaattatgtcattttctcagattattatccgtgttg 6936460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 363 - 499
Target Start/End: Original strand, 40747707 - 40747844
Alignment:
Q  363 ctatgaagcacggacacttaccggattaggcgtgtccc-gtgtcggacacgcgtcggtgtccaacaccgacacgacacctatgattaaacaaaattatat 461  Q
    ||||||||||||||| ||   ||||||||| ||||||| |||| ||||| |  ||||||||| ||||| ||| ||||||||| |||| |   |||||| |    
T  40747707 ctatgaagcacggacgctcctcggattaggggtgtccctgtgtgggacatggatcggtgtccgacaccaacatgacacctataattacattgaattatgt 40747806  T
Q  462 cattttatcaaattattatccgtgttggtgtccgtgtc 499  Q
    |||||| |||||||||||||||||| |||||| |||||    
T  40747807 cattttctcaaattattatccgtgtcggtgtctgtgtc 40747844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 363 - 440
Target Start/End: Complemental strand, 40917879 - 40917802
Alignment:
Q  363 ctatgaagcacggacacttaccggattaggcgtgtcccg-tgtcggacacgcgtcggtgtccaacaccgacacgacacc 440  Q
    |||||||||||||||| |   |||||||||||||||||| ||||||||||| |||| ||||||||||||||||||||||    
T  40917879 ctatgaagcacggacagtcctcggattaggcgtgtcccggtgtcggacacgtgtcg-tgtccaacaccgacacgacacc 40917802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 429 - 495
Target Start/End: Complemental strand, 6574047 - 6573981
Alignment:
Q  429 cgacacgacacctatgattaaacaaaattatatcattttatcaaattattatccgtgttggtgtccg 495  Q
    |||||| ||||||||||||| || ||||||||||||| | ||||||||| |||||||| ||||||||    
T  6574047 cgacacaacacctatgattacactaaattatatcattgtctcaaattatcatccgtgtcggtgtccg 6573981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 363 - 412
Target Start/End: Complemental strand, 34741965 - 34741916
Alignment:
Q  363 ctatgaagcacggacacttaccggattaggcgtgtcccgtgtcggacacg 412  Q
    ||||||||||||||||||   |||||||||||||||||||||||||||||    
T  34741965 ctatgaagcacggacactcttcggattaggcgtgtcccgtgtcggacacg 34741916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 363 - 440
Target Start/End: Original strand, 18556385 - 18556462
Alignment:
Q  363 ctatgaagcacggacacttaccggattaggcgtgtccc-gtgtcggacacgcgtcggtgtccaacaccgacacgacacc 440  Q
    |||||||||||||||||||  ||||||||||||||||| |||||||| ||| ||||| |||  |||||| |||||||||    
T  18556385 ctatgaagcacggacacttctcggattaggcgtgtcccagtgtcggatacgtgtcgg-gtctgacaccgtcacgacacc 18556462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 363 - 440
Target Start/End: Complemental strand, 47989627 - 47989550
Alignment:
Q  363 ctatgaagcacggacacttaccggattaggcgtgtcccg-tgtcggacacgcgtcggtgtccaacaccgacacgacacc 440  Q
    ||||||||||||||||||   |||||||||||||||||| |||| |||| | ||| |||||| ||||||||||||||||    
T  47989627 ctatgaagcacggacactcctcggattaggcgtgtcccgatgtcagacatgtgtc-gtgtccgacaccgacacgacacc 47989550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 385 - 481
Target Start/End: Original strand, 351040 - 351137
Alignment:
Q  385 ggattaggcgtgtcccg-tgtcggacacgcgtcggtgtccaacaccgacacgacacctatgattaaacaaaattatatcattttatcaaattattatc 481  Q
    ||||||||||||||||| ||| | ||| ||||||||||| |||| |||||||| || |||||||  |   |||||| | |||||||||||||||||||    
T  351040 ggattaggcgtgtcccggtgttgaacatgcgtcggtgtctaacagcgacacgatacatatgattccattgaattatgtgattttatcaaattattatc 351137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 363 - 439
Target Start/End: Complemental strand, 6427594 - 6427518
Alignment:
Q  363 ctatgaagcacggacacttaccggattaggcgtgtccc-gtgtcggacacgcgtcggtgtccaacaccgacacgacac 439  Q
    |||||||||||||||||| | | ||||||||||||||| |||||||||||| ||| |||||| || || |||||||||    
T  6427594 ctatgaagcacggacactcatcagattaggcgtgtcccggtgtcggacacgtgtc-gtgtccgacgcctacacgacac 6427518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 361 - 441
Target Start/End: Complemental strand, 32900012 - 32899931
Alignment:
Q  361 atctatgaagcacggacacttaccggattaggcgtgtcccg-tgtcggacacgcgtcggtgtccaacaccgacacgacacct 441  Q
    |||||||||||| ||||| |   ||||||||| |||||||| |||| |||| |||||||||||| |||||||||| ||||||    
T  32900012 atctatgaagcaaggacaatcctcggattaggggtgtcccggtgtccgacatgcgtcggtgtccgacaccgacacaacacct 32899931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 363 - 434
Target Start/End: Original strand, 32461393 - 32461464
Alignment:
Q  363 ctatgaagcacggacacttaccggattaggcgtgtccc-gtgtcggacacgcgtcggtgtccaacaccgacac 434  Q
    |||||||||||||||||||   |||||||||||||||| ||||| |||||| ||| |||||| ||||||||||    
T  32461393 ctatgaagcacggacacttcttggattaggcgtgtcccagtgtcagacacgtgtc-gtgtccgacaccgacac 32461464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 363 - 434
Target Start/End: Complemental strand, 37598950 - 37598879
Alignment:
Q  363 ctatgaagcacggacacttaccggattaggcgtgtccc-gtgtcggacacgcgtcggtgtccaacaccgacac 434  Q
    ||||||||||||||||||   |||||||||||||||||  ||||||||||| ||| |||||| ||||||||||    
T  37598950 ctatgaagcacggacactcctcggattaggcgtgtcccattgtcggacacgtgtc-gtgtccgacaccgacac 37598879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 424 - 508
Target Start/End: Original strand, 39101178 - 39101262
Alignment:
Q  424 aacaccgacacgacacctatgattaaacaaaattatatcattttatcaaattattatccgtgttggtgtccgtgtcgtatctgat 508  Q
    |||||||| ||||||||||| |||| ||  |||||| | ||||| ||||||||||||  |||| |||||| ||||||| ||||||    
T  39101178 aacaccgaaacgacacctataattacacttaattatgttattttctcaaattattatatgtgtcggtgtctgtgtcgtgtctgat 39101262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 363 - 440
Target Start/End: Complemental strand, 9828174 - 9828097
Alignment:
Q  363 ctatgaagcacggacacttaccggattaggcgtgtccc-gtgtcggacacgcgtcggtgtccaacaccgacacgacacc 440  Q
    ||||||||||||||||||   |||||||| |||||||| |||||||||||| ||| |||||  |||| |||||||||||    
T  9828174 ctatgaagcacggacactcctcggattagacgtgtcccggtgtcggacacgtgtc-gtgtctgacacggacacgacacc 9828097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 430 - 488
Target Start/End: Original strand, 22794080 - 22794138
Alignment:
Q  430 gacacgacacctatgattaaacaaaattatatcattttatcaaattattatccgtgttg 488  Q
    |||||||||||||| |||| ||   ||||| ||||||| ||||||||||||||||||||    
T  22794080 gacacgacacctataattacactgtattatgtcattttttcaaattattatccgtgttg 22794138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 365 - 434
Target Start/End: Original strand, 42359391 - 42359460
Alignment:
Q  365 atgaagcacggacacttaccggattaggcgtgtccc-gtgtcggacacgcgtcggtgtccaacaccgacac 434  Q
    ||||||||||||||||   ||||||||||||||||| ||||||||||| ||||  ||||| ||||||||||    
T  42359391 atgaagcacggacactcctcggattaggcgtgtcccggtgtcggacacacgtc-ttgtccgacaccgacac 42359460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 363 - 439
Target Start/End: Complemental strand, 15765877 - 15765800
Alignment:
Q  363 ctatgaagcacggacacttaccggattaggcgtgtccc-gtgtcggacacgcgtcggtgtccaacaccgacacgacac 439  Q
    ||||||||||||||||||   ||||||||||||||||| ||||| ||||| ||||||  ||  ||||||||| |||||    
T  15765877 ctatgaagcacggacactcttcggattaggcgtgtcccagtgtcagacacacgtcggcatctgacaccgacaagacac 15765800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 426 - 486
Target Start/End: Complemental strand, 21145528 - 21145467
Alignment:
Q  426 caccgacacgacacctatgattaaacaaaattatatca-ttttatcaaattattatccgtgt 486  Q
    |||||||||||| |||||||||| ||  |||||| ||| |||| ||||||||||||||||||    
T  21145528 caccgacacgacgcctatgattacactgaattatgtcatttttttcaaattattatccgtgt 21145467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 365 - 479
Target Start/End: Original strand, 1486646 - 1486760
Alignment:
Q  365 atgaagcacggacacttaccggattaggcgtgtccc-gtgtcggacacgcgtcggtgtccaacaccgaca-cgacacctatgattaaacaaaattatatc 462  Q
    ||||||||| ||||||   ||||||||||||||||| |||||||||||| ||| |||||| ||| ||||| |||||| ||| |||| ||  |||||| |     
T  1486646 atgaagcacagacactcctcggattaggcgtgtcccggtgtcggacacgtgtc-gtgtccgaca-cgacaccgacacttataattacactgaattatgtg 1486743  T
Q  463 attttatcaaattatta 479  Q
    ||||| |||||||||||    
T  1486744 attttttcaaattatta 1486760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 363 - 434
Target Start/End: Original strand, 9690213 - 9690285
Alignment:
Q  363 ctatgaagcacggacacttaccggattaggcgtgtccc-gtgtcggacacgcgtcggtgtccaacaccgacac 434  Q
    |||||||||||  |||||  |||||||||||||||||| |||||||||||| ||| ||| || || |||||||    
T  9690213 ctatgaagcacaaacactctccggattaggcgtgtcccggtgtcggacacgtgtcagtggccgacgccgacac 9690285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 386 - 437
Target Start/End: Original strand, 17831485 - 17831537
Alignment:
Q  386 gattaggcgtgtcccg-tgtcggacacgcgtcggtgtccaacaccgacacgac 437  Q
    |||||||||||||||| ||||||||||  |||||||||| |||| ||||||||    
T  17831485 gattaggcgtgtcccggtgtcggacacatgtcggtgtccgacactgacacgac 17831537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 453 - 493
Target Start/End: Complemental strand, 23440044 - 23440004
Alignment:
Q  453 aaattatatcattttatcaaattattatccgtgttggtgtc 493  Q
    ||||||||||||||| |||||||||||| ||||| ||||||    
T  23440044 aaattatatcattttctcaaattattatacgtgtcggtgtc 23440004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 212 - 252
Target Start/End: Original strand, 34673835 - 34673875
Alignment:
Q  212 gttaaactgatttaaaaagtaattgaaccgatctaaaaaat 252  Q
    ||||||| |||||||||||| |||||||| |||||||||||    
T  34673835 gttaaaccgatttaaaaagtgattgaaccaatctaaaaaat 34673875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 431 - 486
Target Start/End: Original strand, 48415728 - 48415784
Alignment:
Q  431 acacgacacctatgattaaacaaaattatatca-ttttatcaaattattatccgtgt 486  Q
    |||||||| ||||||||| || ||||||||||| |||| | ||||||||||||||||    
T  48415728 acacgacatctatgattacactaaattatatcatttttttaaaattattatccgtgt 48415784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 64; Significance: 1e-27; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 364 - 486
Target Start/End: Complemental strand, 15864950 - 15864834
Alignment:
Q  364 tatgaagcacggacacttaccggattaggcgtgtcccgtgtcggacacgcgtcggtgtccaacaccgacacgacacctatgattaaacaaaattatatca 463  Q
    |||||||||||||||||    ||||||||||||||||||||| |||||| ||||||||||      ||||||||||||||||||| || |||||||||||    
T  15864950 tatgaagcacggacactctttggattaggcgtgtcccgtgtcagacacgtgtcggtgtcc------gacacgacacctatgattacactaaattatatca 15864857  T
Q  464 ttttatcaaattattatccgtgt 486  Q
    |||| ||||||||||||||||||    
T  15864856 ttttttcaaattattatccgtgt 15864834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 363 - 488
Target Start/End: Complemental strand, 27903757 - 27903631
Alignment:
Q  363 ctatgaagcacggacacttaccggattaggcgtg-tcccgtgtcggacacgcgtcggtgtccaacaccgacacgacacctatgattaaacaaaattatat 461  Q
    |||||||||||||||||||  |||||||||| || ||| ||||| ||||||||||||| ||| |||||||||| |||| |||||||| |  |||||||||    
T  27903757 ctatgaagcacggacacttctcggattaggcatgatccagtgtcagacacgcgtcggtatccgacaccgacacaacacttatgattacattaaattatat 27903658  T
Q  462 cattttatcaaattattatccgtgttg 488  Q
    | |||| ||||||||||||| ||||||    
T  27903657 cgttttctcaaattattatctgtgttg 27903631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 386 - 486
Target Start/End: Original strand, 14223811 - 14223911
Alignment:
Q  386 gattaggcgtgtcccgtgtcggacacgcgtcggtgtccaacaccgacacgacacctatgattaaacaaaattatatcattttatcaaattattatccgtg 485  Q
    ||||||||||||||| ||||||||||| |||||||||  ||||||||||||||| ||||| || || |||||||||| |||| ||||||||||||| |||    
T  14223811 gattaggcgtgtcccatgtcggacacgtgtcggtgtcggacaccgacacgacacttatgaatacactaaattatatcgttttctcaaattattatctgtg 14223910  T
Q  486 t 486  Q
    |    
T  14223911 t 14223911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 363 - 488
Target Start/End: Complemental strand, 21211413 - 21211287
Alignment:
Q  363 ctatgaagcacggacacttaccggattaggcgtgtccc-gtgtcggacacgcgtcggtgtccaacaccgacacgacacctatgattaaacaaaattatat 461  Q
    |||||||||||  |||||   ||||||||| ||||||| |||||||||||||||||||||| ||||||||||||||||| || |||| ||  || ||| |    
T  21211413 ctatgaagcacaaacactcctcggattaggagtgtcccagtgtcggacacgcgtcggtgtcgaacaccgacacgacacccataattacactgaactatgt 21211314  T
Q  462 cattttatcaaattattatccgtgttg 488  Q
     ||||| ||||||||||||||||||||    
T  21211313 aattttctcaaattattatccgtgttg 21211287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 363 - 486
Target Start/End: Complemental strand, 25074914 - 25074790
Alignment:
Q  363 ctatgaagcacggacacttaccggattaggcgtgtccc-gtgtcggacacgcgtcggtgtccaacaccgacacgacacctatgattaaacaaaattatat 461  Q
    |||||||||||| |||||   ||||||||| ||||||| ||||||||||||||| ||||||  |||||||||| || |||||||||| ||  |||||| |    
T  25074914 ctatgaagcacgaacactcctcggattaggtgtgtcccagtgtcggacacgcgttggtgtcagacaccgacacaacgcctatgattacactcaattatgt 25074815  T
Q  462 cattttatcaaattattatccgtgt 486  Q
    |||||| ||||||||||||| ||||    
T  25074814 cattttctcaaattattatcggtgt 25074790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 401 - 488
Target Start/End: Original strand, 12704630 - 12704717
Alignment:
Q  401 gtgtcggacacgcgtcggtgtccaacaccgacacgacacctatgattaaacaaaattatatcattttatcaaattattatccgtgttg 488  Q
    |||||||||| |||| ||||||| |||||||||||||||||||||||| |   |||||| ||||||| ||||||||||||||||||||    
T  12704630 gtgtcggacatgcgttggtgtccgacaccgacacgacacctatgattacattgaattatgtcattttttcaaattattatccgtgttg 12704717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 367 - 489
Target Start/End: Original strand, 25651969 - 25652092
Alignment:
Q  367 gaagcacggacacttaccggattaggcgtgtcccg-tgtcggacacgcgtcggtgtccaacaccgacacgacacctatgattaaacaaaattatatcatt 465  Q
    ||||||| ||||||   ||||||||| ||||| || ||||| ||||| ||||||||||||||| ||||| |||||||| | || ||  ||||||||||||    
T  25651969 gaagcactgacactcttcggattaggtgtgtctcggtgtcgaacacgtgtcggtgtccaacactgacacaacacctataactacactgaattatatcatt 25652068  T
Q  466 ttatcaaattattatccgtgttgg 489  Q
    || |||||||||||||||||||||    
T  25652069 ttctcaaattattatccgtgttgg 25652092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 401 - 492
Target Start/End: Complemental strand, 25326512 - 25326421
Alignment:
Q  401 gtgtcggacacgcgtcggtgtccaacaccgacacgacacctatgattaaacaaaattatatcattttatcaaattattatccgtgttggtgt 492  Q
    |||||| |||||||||||||||| ||||| |||||||| |||| |||| || ||||||||| ||||| | ||||||||||| ||||||||||    
T  25326512 gtgtcgaacacgcgtcggtgtccgacaccaacacgacatctataattacactaaattatattatttttttaaattattatctgtgttggtgt 25326421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 363 - 486
Target Start/End: Complemental strand, 8903554 - 8903433
Alignment:
Q  363 ctatgaagcacggacacttaccggattaggcgtgtcccgtgtcggacacgcgtcggtgtccaacaccgacacgacacctatgattaaacaaaattatatc 462  Q
    |||||||||||| |||||   ||||||||| |||||||| ||||||||||| | |||||||  || ||||||||||||||| |||| || ||| ||| ||    
T  8903554 ctatgaagcacgaacactcctcggattaggtgtgtcccg-gtcggacacgcataggtgtccggcatcgacacgacacctataattacactaaa-tatgtc 8903457  T
Q  463 attttatcaaattattatccgtgt 486  Q
    ||||| ||||| ||||||||||||    
T  8903456 attttctcaaaatattatccgtgt 8903433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 363 - 440
Target Start/End: Original strand, 41961579 - 41961656
Alignment:
Q  363 ctatgaagcacggacacttaccggattaggcgtgtccc-gtgtcggacacgcgtcggtgtccaacaccgacacgacacc 440  Q
    |||||||||||||||||||  ||||||||||||||||| |||||||||||| ||| |||||| | ||||||||||||||    
T  41961579 ctatgaagcacggacacttctcggattaggcgtgtcccagtgtcggacacgtgtc-gtgtccgataccgacacgacacc 41961656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 363 - 482
Target Start/End: Complemental strand, 52369906 - 52369780
Alignment:
Q  363 ctatgaagcacggacacttaccggattaggcgtgtcccg-tgtcggacacgcgtcggtgt------ccaacaccgacacgacacctatgattaaacaaaa 455  Q
    ||||||||||||||||||   |||| |||| |||||||| ||| ||||||||||||||||      || |||||||||||||||||||||||| |   ||    
T  52369906 ctatgaagcacggacactcctcggaataggtgtgtcccggtgttggacacgcgtcggtgtccgataccgacaccgacacgacacctatgattacattgaa 52369807  T
Q  456 ttatatcattttatcaaattattatcc 482  Q
    |||| | ||||| ||||||||||||||    
T  52369806 ttatgtaattttctcaaattattatcc 52369780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 410 - 480
Target Start/End: Complemental strand, 25892537 - 25892467
Alignment:
Q  410 acgcgtcggtgtccaacaccgacacgacacctatgattaaacaaaattatatcattttatcaaattattat 480  Q
    |||||| ||||||| |||| ||||||||||||||||||| ||  |||||||||||||| | ||||||||||    
T  25892537 acgcgttggtgtccgacactgacacgacacctatgattacactgaattatatcattttcttaaattattat 25892467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 365 - 440
Target Start/End: Original strand, 4987222 - 4987297
Alignment:
Q  365 atgaagcacggacacttaccggattaggcgtgtccc-gtgtcggacacgcgtcggtgtccaacaccgacacgacacc 440  Q
    |||||| |||||||||   ||||||||||||||||| |||||||||||| ||| |||||||||||||||||| ||||    
T  4987222 atgaagtacggacactcctcggattaggcgtgtcccggtgtcggacacgtgtc-gtgtccaacaccgacacgtcacc 4987297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 360 - 434
Target Start/End: Complemental strand, 20503587 - 20503513
Alignment:
Q  360 aatctatgaagcacggacacttaccggattaggcgtgtccc-gtgtcggacacgcgtcggtgtccaacaccgacac 434  Q
    |||||||||||||||||||||   ||||||||||||||||| ||||| |||| | ||| |||||||||||||||||    
T  20503587 aatctatgaagcacggacactcctcggattaggcgtgtcccggtgtcagacatgtgtc-gtgtccaacaccgacac 20503513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 365 - 486
Target Start/End: Original strand, 24204983 - 24205099
Alignment:
Q  365 atgaagcacggacacttaccggattaggcgtgtcccg-tgtcggacacgcgtcggtgtccaacaccgacacgacacctatgattaaacaaaattatatca 463  Q
    ||||||||||||||||   || ||||||||||||| | ||||||||||||||| ||||      |||||||||||| ||| |||| ||   ||||| |||    
T  24204983 atgaagcacggacactcctcgaattaggcgtgtcctggtgtcggacacgcgtcagtgt------ccgacacgacacttataattacactgtattatgtca 24205076  T
Q  464 ttttatcaaattattatccgtgt 486  Q
    |||| ||||||||||||||||||    
T  24205077 ttttctcaaattattatccgtgt 24205099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 363 - 434
Target Start/End: Complemental strand, 55401194 - 55401123
Alignment:
Q  363 ctatgaagcacggacacttaccggattaggcgtgtc-ccgtgtcggacacgcgtcggtgtccaacaccgacac 434  Q
    ||||||||||||||||||   ||||||||||||||| | |||||||||||| ||| |||||| ||||||||||    
T  55401194 ctatgaagcacggacactcctcggattaggcgtgtctcggtgtcggacacgtgtc-gtgtccgacaccgacac 55401123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 388 - 477
Target Start/End: Original strand, 51512142 - 51512232
Alignment:
Q  388 ttaggcgtgtcccg-tgtcggacacgcgtcggtgtccaacaccgacacgacacctatgattaaacaaaattatatcattttatcaaattat 477  Q
    |||||||||||| | |||| ||||||| ||||||| | ||||||||||||||| |||||||  |   |||||| | |||||||||||||||    
T  51512142 ttaggcgtgtcctggtgtcagacacgcatcggtgttcgacaccgacacgacacatatgattccattgaattatgtgattttatcaaattat 51512232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 360 - 412
Target Start/End: Complemental strand, 11610631 - 11610578
Alignment:
Q  360 aatctatgaagcacggacacttaccggattaggcgtgtcccg-tgtcggacacg 412  Q
    |||||||||||||||||||||   | |||||||||||||||| |||||||||||    
T  11610631 aatctatgaagcacggacactcctcagattaggcgtgtcccgatgtcggacacg 11610578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 363 - 439
Target Start/End: Complemental strand, 14209243 - 14209167
Alignment:
Q  363 ctatgaagcacggacacttaccggattaggcgtgtcccg-tgtcggacacgcgtcggtgtccaacaccgacacgacac 439  Q
    |||||||||||||||||||   |||||||| || ||||| ||||| ||||| ||| |||||| |||||||||||||||    
T  14209243 ctatgaagcacggacacttcttggattaggtgtatcccgatgtcgtacacgtgtc-gtgtccgacaccgacacgacac 14209167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 428 - 501
Target Start/End: Complemental strand, 25365521 - 25365448
Alignment:
Q  428 ccgacacgacacctatgattaaacaaaattatatcattttatcaaattattatccgtgttggtgtccgtgtcgt 501  Q
    |||||||||||| |||||||| ||  |||||| |||| || |||||||||||||| ||  |||||| |||||||    
T  25365521 ccgacacgacacttatgattacaccgaattatgtcatattctcaaattattatccatgccggtgtctgtgtcgt 25365448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 363 - 411
Target Start/End: Original strand, 34185052 - 34185101
Alignment:
Q  363 ctatgaagcacggacacttaccggattaggcgtgtccc-gtgtcggacac 411  Q
    ||||||||||||||||||   ||||||||||||||||| |||||||||||    
T  34185052 ctatgaagcacggacactcctcggattaggcgtgtcccggtgtcggacac 34185101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 364 - 439
Target Start/End: Complemental strand, 14217021 - 14216946
Alignment:
Q  364 tatgaagcacggacacttaccggattaggcgtgtccc-gtgtcggacacgcgtcggtgtccaacaccgacacgacac 439  Q
    ||||||||||||||||||  ||||||||| ||||||| |||||| ||||| ||| |||||| ||||  |||||||||    
T  14217021 tatgaagcacggacacttctcggattaggtgtgtcccagtgtcgtacacgtgtc-gtgtccgacactaacacgacac 14216946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 364 - 439
Target Start/End: Complemental strand, 14223150 - 14223075
Alignment:
Q  364 tatgaagcacggacacttaccggattaggcgtgtccc-gtgtcggacacgcgtcggtgtccaacaccgacacgacac 439  Q
    ||||||||||||||||||  ||||||||| ||||||| |||||| ||||| ||| |||||| ||||  |||||||||    
T  14223150 tatgaagcacggacacttctcggattaggtgtgtcccagtgtcgtacacgtgtc-gtgtccgacactaacacgacac 14223075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 365 - 479
Target Start/End: Complemental strand, 29508567 - 29508452
Alignment:
Q  365 atgaagcacggacacttaccggattaggcgtgtccc-gtgtcggacacgcgtcggtgtccaacaccgaca-cgacacctatgattaaacaaaattatatc 462  Q
    |||||||||||||||||   ||||||| |||||||| |||||||||  | ||| |||||| ||||| ||| |||||| ||| |||| ||  ||||||||     
T  29508567 atgaagcacggacacttcttggattagacgtgtcccggtgtcggacgtgtgtc-gtgtccgacaccaacatcgacacatataattacactgaattatatg 29508469  T
Q  463 attttatcaaattatta 479  Q
    ||||| |||||||||||    
T  29508468 attttttcaaattatta 29508452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 434 - 482
Target Start/End: Complemental strand, 33006876 - 33006828
Alignment:
Q  434 cgacacctatgattaaacaaaattatatcattttatcaaattattatcc 482  Q
    ||||||||| ||||||||  |||||| | ||||||||||||||||||||    
T  33006876 cgacacctacgattaaactgaattatgtaattttatcaaattattatcc 33006828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 363 - 434
Target Start/End: Original strand, 40993275 - 40993346
Alignment:
Q  363 ctatgaagcacggacacttaccggattaggcgtgtccc-gtgtcggacacgcgtcggtgtccaacaccgacac 434  Q
    |||||||||| |||||||   ||||||||||||||||| |||||||||| | ||| |||||| ||||||||||    
T  40993275 ctatgaagcatggacactcctcggattaggcgtgtcccggtgtcggacatgtgtc-gtgtccgacaccgacac 40993346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 58; Significance: 4e-24; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 364 - 486
Target Start/End: Original strand, 23354582 - 23354710
Alignment:
Q  364 tatgaagcacggacacttaccggattaggcgtgtcccgtgtcggacacgcgtcggtgtccaac------accgacacgacacctatgattaaacaaaatt 457  Q
    |||||| ||||||||||   |||||||||||||||||||||| |||||  |||||||||| ||      |||||||||||||||||||||| || |||||    
T  23354582 tatgaaccacggacactcctcggattaggcgtgtcccgtgtcagacaccggtcggtgtccgaccccgacaccgacacgacacctatgattacactaaatt 23354681  T
Q  458 atatcattttatcaaattattatccgtgt 486  Q
    |||||||||| ||||||||||||| ||||    
T  23354682 atatcattttctcaaattattatctgtgt 23354710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 365 - 486
Target Start/End: Original strand, 23354926 - 23355053
Alignment:
Q  365 atgaagcacggacacttaccggattaggcgtgtcccgtgtcggacacgcgtcggtgtcca------acaccgacacgacacctatgattaaacaaaatta 458  Q
    |||||||| |||||||   |||||||||||||||||||||| |||||| |||||||||||      ||||||||| |||||||||||||  || ||||||    
T  23354926 atgaagcaaggacactcctcggattaggcgtgtcccgtgtcagacacgggtcggtgtccaaccccgacaccgacatgacacctatgattgcactaaatta 23355025  T
Q  459 tatcattttatcaaattattatccgtgt 486  Q
    ||||||||| ||||||||||||| ||||    
T  23355026 tatcattttctcaaattattatctgtgt 23355053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 425 - 499
Target Start/End: Complemental strand, 25544543 - 25544469
Alignment:
Q  425 acaccgacacgacacctatgattaaacaaaattatatcattttatcaaattattatccgtgttggtgtccgtgtc 499  Q
    |||||||||||||||||||||||| ||  |||||||||||||| |||||||||||| ||||| |||||| |||||    
T  25544543 acaccgacacgacacctatgattacactgaattatatcattttctcaaattattatacgtgtcggtgtcggtgtc 25544469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 358 - 440
Target Start/End: Complemental strand, 37419878 - 37419796
Alignment:
Q  358 acaatctatgaagcacggacacttaccggattaggcgtgtccc-gtgtcggacacgcgtcggtgtccaacaccgacacgacacc 440  Q
    |||| ||||||||||||||||||   ||||||||||||||||| ||||||||||||| || |||||| ||||||||||||||||    
T  37419878 acaacctatgaagcacggacactcctcggattaggcgtgtcccggtgtcggacacgcatc-gtgtccgacaccgacacgacacc 37419796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 399 - 486
Target Start/End: Complemental strand, 37986867 - 37986780
Alignment:
Q  399 ccgtgtcggacacgcgtcggtgtccaacaccgacacgacacctatgattaaacaaaattatatcattttatcaaattattatccgtgt 486  Q
    ||||||| ||||| ||||||||||| ||||| |||||| ||||||||||| ||  || ||||||||||| ||||||||||||| ||||    
T  37986867 ccgtgtcagacactcgtcggtgtccgacaccaacacgatacctatgattacactcaaatatatcattttttcaaattattatctgtgt 37986780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 363 - 486
Target Start/End: Original strand, 11307934 - 11308061
Alignment:
Q  363 ctatgaagcacggacacttaccggattaggcgtgtcccgtgtcggacacgcgtcggtgtcca------acaccgacacgacacctatgattaaacaaaat 456  Q
    ||||||||||||||||||   ||||||| | || ||  ||||||||||||||||||||||||      |||||||||||||||||||||||| ||  |||    
T  11307934 ctatgaagcacggacactcctcggattaagtgtttcg-gtgtcggacacgcgtcggtgtccaacaccgacaccgacacgacacctatgattacactgaat 11308032  T
Q  457 tatatcattttatcaaattattatccgtgt 486  Q
    ||| ||||||| |||||||| |||||||||    
T  11308033 tatgtcattttttcaaatta-tatccgtgt 11308061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 401 - 481
Target Start/End: Complemental strand, 24011122 - 24011042
Alignment:
Q  401 gtgtcggacacgcgtcggtgtccaacaccgacacgacacctatgattaaacaaaattatatcattttatcaaattattatc 481  Q
    ||||||||||||| || || ||  |||||||| ||||||||||||||| || ||||||| ||||||| |||||||||||||    
T  24011122 gtgtcggacacgcatccgtatcagacaccgacgcgacacctatgattacactaaattatgtcattttctcaaattattatc 24011042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 361 - 440
Target Start/End: Complemental strand, 26769643 - 26769564
Alignment:
Q  361 atctatgaagcacggacacttaccggattaggcgtgtccc-gtgtcggacacgcgtcggtgtccaacaccgacacgacacc 440  Q
    ||||||||||||||||||||   ||||||||||||||||| |||||||||||| ||| |||||| | ||||||| ||||||    
T  26769643 atctatgaagcacggacactcctcggattaggcgtgtcccagtgtcggacacgtgtc-gtgtccgataccgacatgacacc 26769564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 363 - 440
Target Start/End: Complemental strand, 35056998 - 35056921
Alignment:
Q  363 ctatgaagcacggacacttaccggattaggcgtgtc-ccgtgtcggacacgcgtcggtgtccaacaccgacacgacacc 440  Q
    ||||||||||||||||||   | ||||||||||||  |||||||||||||| |||| ||||| ||||||||||||||||    
T  35056998 ctatgaagcacggacactcctcagattaggcgtgtttccgtgtcggacacgtgtcg-tgtccgacaccgacacgacacc 35056921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 386 - 481
Target Start/End: Complemental strand, 38919313 - 38919212
Alignment:
Q  386 gattaggcgtgtcccgtgtcggacacgcgtcggtgtccaacaccgacac------gacacctatgattaaacaaaattatatcattttatcaaattatta 479  Q
    |||||| ||||||| ||||||||||||| || || ||| ||||||||||      |||||||||||||| || ||| |||| |||||| |||||||||||    
T  38919313 gattagacgtgtcctgtgtcggacacgcatcagtatccgacaccgacactaacacgacacctatgattacactaaactataacattttctcaaattatta 38919214  T
Q  480 tc 481  Q
    ||    
T  38919213 tc 38919212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 370 - 430
Target Start/End: Original strand, 2846854 - 2846916
Alignment:
Q  370 gcacggacacttaccggattaggcgtgtcccg--tgtcggacacgcgtcggtgtccaacaccg 430  Q
    ||||||| ||||  |||||||||||||||||   ||| |||||||||||||||||||||||||    
T  2846854 gcacggaaacttctcggattaggcgtgtccccgatgttggacacgcgtcggtgtccaacaccg 2846916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 365 - 434
Target Start/End: Original strand, 2438661 - 2438730
Alignment:
Q  365 atgaagcacggacacttaccggattaggcgtgtccc-gtgtcggacacgcgtcggtgtccaacaccgacac 434  Q
    ||||||||||||||||   ||||||||||||||||| |||||||||| | ||| |||||| ||||||||||    
T  2438661 atgaagcacggacactcctcggattaggcgtgtcccggtgtcggacatgtgtc-gtgtccgacaccgacac 2438730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 364 - 440
Target Start/End: Complemental strand, 44860449 - 44860373
Alignment:
Q  364 tatgaagcacggacacttaccggattaggcgtgtcccg-tgtcggacacgcgtcggtgtccaacaccgacacgacacc 440  Q
    |||||||||||||||||   || |||||| |||||||| ||||||||||  |||| ||||||||||| ||||||||||    
T  44860449 tatgaagcacggacactcctcgaattaggtgtgtcccgatgtcggacacatgtcg-tgtccaacaccaacacgacacc 44860373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 426 - 486
Target Start/End: Original strand, 10535757 - 10535817
Alignment:
Q  426 caccgacacgacacctatgattaaacaaaattatatcattttatcaaattattatccgtgt 486  Q
    |||| ||||||||| |||||||| ||  |||||| ||||||| ||||||||||||| ||||    
T  10535757 caccaacacgacacttatgattacactgaattatgtcattttctcaaattattatcggtgt 10535817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 57; Significance: 1e-23; HSPs: 24)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 363 - 486
Target Start/End: Complemental strand, 34446690 - 34446566
Alignment:
Q  363 ctatgaagcacggacacttaccggattaggcgtgtccc-gtgtcggacacgcgtcggtgtccaacaccgacacgacacctatgattaaacaaaattatat 461  Q
    ||||||||||||||||||    |||||||| ||||||| ||||| || ||||||||||||   |||||||||||||||||||||||| ||  |||||| |    
T  34446690 ctatgaagcacggacactccttggattaggtgtgtcccagtgtcagatacgcgtcggtgttggacaccgacacgacacctatgattacactgaattatgt 34446591  T
Q  462 cattttatcaaattattatccgtgt 486  Q
    |||||| ||||||||||||||||||    
T  34446590 cattttctcaaattattatccgtgt 34446566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 424 - 486
Target Start/End: Complemental strand, 6389806 - 6389744
Alignment:
Q  424 aacaccgacacgacacctatgattaaacaaaattatatcattttatcaaattattatccgtgt 486  Q
    ||||||||||||||||||||||||| || ||||||||||||||| ||||||||||||||||||    
T  6389806 aacaccgacacgacacctatgattacactaaattatatcattttctcaaattattatccgtgt 6389744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 407 - 489
Target Start/End: Original strand, 17168442 - 17168524
Alignment:
Q  407 gacacgcgtcggtgtccaacaccgacacgacacctatgattaaacaaaattatatcattttatcaaattattatccgtgttgg 489  Q
    |||||| ||| |||||| ||||||||||||||||||| |||| || ||||||||||||||| ||||||||||||| |||||||    
T  17168442 gacacgtgtcagtgtccgacaccgacacgacacctattattacactaaattatatcattttctcaaattattatcagtgttgg 17168524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 361 - 484
Target Start/End: Complemental strand, 26247552 - 26247429
Alignment:
Q  361 atctatgaagcacggacacttaccggattaggcgtgtcccgtgtcggacacgcgtcggtgtccaacaccgacacgacacctatgattaaacaaaattata 460  Q
    ||||||||| ||||||||||   | ||||||| |||| | ||||| |||||| || ||||||| |||||||||||| ||||||||||| || ||| |||     
T  26247552 atctatgaaacacggacactcctcagattaggtgtgttcggtgtcagacacgtgttggtgtccgacaccgacacgaaacctatgattatactaaaatatg 26247453  T
Q  461 tcattttatcaaattattatccgt 484  Q
    ||||||| | ||||||||||||||    
T  26247452 tcattttcttaaattattatccgt 26247429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 425 - 521
Target Start/End: Original strand, 19602178 - 19602276
Alignment:
Q  425 acaccgacacgacacctatgattaaacaaaattatatcattttatcaaattattatccgtgttg--gtgtccgtgtcgtatctgatgtccatgtctgtg 521  Q
    |||||||||| | ||||||||||| ||  |||||||||||||| ||||||||||||| ||||||  |||||||||| || || | ||||||||||||||    
T  19602178 acaccgacacaatacctatgattacactgaattatatcattttctcaaattattatcagtgttggtgtgtccgtgttgtgtccggtgtccatgtctgtg 19602276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 428 - 486
Target Start/End: Original strand, 12086345 - 12086403
Alignment:
Q  428 ccgacacgacacctatgattaaacaaaattatatcattttatcaaattattatccgtgt 486  Q
    ||||||||||||||||||||||||  |||||| ||||| | ||||||||||||||||||    
T  12086345 ccgacacgacacctatgattaaactgaattatgtcattatctcaaattattatccgtgt 12086403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 366 - 486
Target Start/End: Original strand, 12235462 - 12235577
Alignment:
Q  366 tgaagcacggacacttaccggattaggcgtgtcccg-tgtcggacacgcgtcggtgtccaacaccgacacgacacctatgattaaacaaaattatatcat 464  Q
    ||||||||||||||||   |||||||| |||||||| || ||||||| ||||||||||       ||||||||||||||||||| ||  |||||| ||||    
T  12235462 tgaagcacggacactttttggattaggggtgtcccggtgccggacacacgtcggtgtcg------gacacgacacctatgattacactgaattatgtcat 12235555  T
Q  465 tttatcaaattattatccgtgt 486  Q
    ||| || |||||||||||||||    
T  12235556 tttctctaattattatccgtgt 12235577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 357 - 440
Target Start/End: Original strand, 8365442 - 8365525
Alignment:
Q  357 aacaatctatgaagcacggacacttaccggattaggcgtgtccc-gtgtcggacacgcgtcggtgtccaacaccgacacgacacc 440  Q
    ||||| |||||||||||||| |||   ||||||||||||||||| |||||||||||| ||| |||||| | ||||||||||||||    
T  8365442 aacaacctatgaagcacggagactcctcggattaggcgtgtcccagtgtcggacacgtgtc-gtgtccgataccgacacgacacc 8365525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 363 - 434
Target Start/End: Complemental strand, 4878061 - 4877991
Alignment:
Q  363 ctatgaagcacggacacttaccggattaggcgtgtcccgtgtcggacacgcgtcggtgtccaacaccgacac 434  Q
    ||||||||||||||||||   |||||||||||||||| |||||||||| | ||| |||||| ||||||||||    
T  4878061 ctatgaagcacggacactcctcggattaggcgtgtcctgtgtcggacatgtgtc-gtgtccgacaccgacac 4877991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 363 - 440
Target Start/End: Complemental strand, 16766827 - 16766750
Alignment:
Q  363 ctatgaagcacggacacttaccggattaggcgtgtccc-gtgtcggacacgcgtcggtgtccaacaccgacacgacacc 440  Q
    |||||||||||||||| |   ||||||||||||||||| |||||||||||| ||  |||||| ||||||||||||||||    
T  16766827 ctatgaagcacggacattcttcggattaggcgtgtcccggtgtcggacacgtgt-tgtgtccgacaccgacacgacacc 16766750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 363 - 408
Target Start/End: Complemental strand, 6389851 - 6389806
Alignment:
Q  363 ctatgaagcacggacacttaccggattaggcgtgtcccgtgtcgga 408  Q
    |||||||||||||||||||  ||||||||| |||||||||||||||    
T  6389851 ctatgaagcacggacacttctcggattaggagtgtcccgtgtcgga 6389806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 358 - 410
Target Start/End: Original strand, 12868611 - 12868664
Alignment:
Q  358 acaatctatgaagcacggacacttaccggattaggcgtg-tcccgtgtcggaca 410  Q
    |||| ||||||||||| |||||||| ||||||||||||| ||||||||||||||    
T  12868611 acaacctatgaagcaccgacacttatcggattaggcgtgttcccgtgtcggaca 12868664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 436 - 504
Target Start/End: Original strand, 7569176 - 7569244
Alignment:
Q  436 acacctatgattaaacaaaattatatcattttatcaaattattatccgtgttggtgtccgtgtcgtatc 504  Q
    |||||||| |||| ||  |||||| | ||||| ||||||||||||| |||||||||||| |||||||||    
T  7569176 acacctataattacactgaattatgtaattttctcaaattattatctgtgttggtgtccatgtcgtatc 7569244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 361 - 440
Target Start/End: Original strand, 9107297 - 9107376
Alignment:
Q  361 atctatgaagcacggacacttaccggattaggcgtgtccc-gtgtcggacacgcgtcggtgtccaacaccgacacgacacc 440  Q
    ||||||||||||||| ||||   ||||||||| ||||||| ||||||||||| |||  |||||| ||||||||||||||||    
T  9107297 atctatgaagcacgggcactcctcggattaggtgtgtcccggtgtcggacacacgt-tgtgtccgacaccgacacgacacc 9107376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 360 - 412
Target Start/End: Complemental strand, 28648405 - 28648353
Alignment:
Q  360 aatctatgaagcacggacacttaccggattaggcgtgtcccgtgtcggacacg 412  Q
    |||||||| |||| ||||||| | ||||||||||||||||||||| |||||||    
T  28648405 aatctatggagcaaggacactcatcggattaggcgtgtcccgtgtaggacacg 28648353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 359 - 434
Target Start/End: Complemental strand, 34595257 - 34595182
Alignment:
Q  359 caatctatgaagcacggacacttaccggattaggcgtgtccc-gtgtcggacacgcgtcggtgtccaacaccgacac 434  Q
    ||||||||||||||||||||||   ||||||||| ||||||| ||||| |||||| ||| |||||| ||||||||||    
T  34595257 caatctatgaagcacggacactcctcggattaggtgtgtcccggtgtcagacacgtgtc-gtgtccgacaccgacac 34595182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 439 - 486
Target Start/End: Complemental strand, 7625170 - 7625123
Alignment:
Q  439 cctatgattaaacaaaattatatcattttatcaaattattatccgtgt 486  Q
    ||||| |||| || ||||||||||||||| ||||||||||||||||||    
T  7625170 cctataattatactaaattatatcattttctcaaattattatccgtgt 7625123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 366 - 412
Target Start/End: Original strand, 9025448 - 9025495
Alignment:
Q  366 tgaagcacggacacttaccggattaggcgtgtccc-gtgtcggacacg 412  Q
    ||||||||||||||||  ||||||||||||||||| ||||||||||||    
T  9025448 tgaagcacggacacttctcggattaggcgtgtcccggtgtcggacacg 9025495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 425 - 511
Target Start/End: Original strand, 30781291 - 30781377
Alignment:
Q  425 acaccgacacgacacctatgattaaacaaaattatatcattttatcaaattattatccgtgttggtgtccgtgtcgtatctgatgtc 511  Q
    ||||||||| |||||||||||||| |   |||||| ||||||| |||||||||||  |||||  |||| |||||||| |||| ||||    
T  30781291 acaccgacatgacacctatgattacaattaattatgtcattttctcaaattattacacgtgtcagtgttcgtgtcgtgtctggtgtc 30781377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 221 - 254
Target Start/End: Complemental strand, 4889164 - 4889131
Alignment:
Q  221 atttaaaaagtaattgaaccgatctaaaaaatgt 254  Q
    |||||||||||| |||||||||||||||||||||    
T  4889164 atttaaaaagtagttgaaccgatctaaaaaatgt 4889131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 363 - 435
Target Start/End: Original strand, 10339054 - 10339126
Alignment:
Q  363 ctatgaagcacggacacttaccggattaggcgtgtccc-gtgtcggacacgcgtcggtgtccaacaccgacacg 435  Q
    ||||||||||||||||||   | ||||||||||||||| |||||||||| | ||| |||||| |||||||||||    
T  10339054 ctatgaagcacggacactcctccgattaggcgtgtcccagtgtcggacatgtgtc-gtgtccgacaccgacacg 10339126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 365 - 479
Target Start/End: Original strand, 26178620 - 26178732
Alignment:
Q  365 atgaagcacggacacttaccggattaggcgtgtcccg-tgtcggacacgcgtcggtgtccaacaccgacacgacacctatgattaaacaaaattatatca 463  Q
    ||||||||| ||||||   | |||||||||||||||| ||||  |||| | ||| ||||||||||  || |||||| |||||||| || ||||||| | |    
T  26178620 atgaagcacagacactcctccgattaggcgtgtcccggtgtcaaacacacatcgatgtccaacac--ac-cgacacatatgattacactaaattatgtga 26178716  T
Q  464 ttttatcaaattatta 479  Q
    ||||||||||||||||    
T  26178717 ttttatcaaattatta 26178732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 363 - 434
Target Start/End: Complemental strand, 28152217 - 28152146
Alignment:
Q  363 ctatgaagcacggacacttaccggattaggcgtgtccc-gtgtcggacacgcgtcggtgtccaacaccgacac 434  Q
    |||||||||||| |||||   |||||||||| |||||| |||||||||||| ||| |||||| ||||||||||    
T  28152217 ctatgaagcacgaacactcctcggattaggcctgtcccggtgtcggacacgtgtc-gtgtccgacaccgacac 28152146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 363 - 434
Target Start/End: Complemental strand, 28715414 - 28715343
Alignment:
Q  363 ctatgaagcacggacacttaccggattaggcgtgtccc-gtgtcggacacgcgtcggtgtccaacaccgacac 434  Q
    |||||||||||| ||||||  || |||||||||||||| |||||| ||||| ||| |||||| ||||||||||    
T  28715414 ctatgaagcacgtacacttctcgaattaggcgtgtcccggtgtcgaacacgtgtc-gtgtccgacaccgacac 28715343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 360 - 440
Target Start/End: Complemental strand, 241727 - 241647
Alignment:
Q  360 aatctatgaagcacggacacttaccggattaggcgtgtccc-gtgtcggacacgcgtcggtgtccaacaccgacacgacacc 440  Q
    ||||||||||||||||||||||  ||||||||||||||||| |||||||||||| ||| |||||| ||||| ||||||||||    
T  241727 aatctatgaagcacggacacttctcggattaggcgtgtcccggtgtcggacacgtgtc-gtgtccgacaccaacacgacacc 241647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 363 - 439
Target Start/End: Complemental strand, 24155 - 24078
Alignment:
Q  363 ctatgaagcacggacacttaccggattaggcgtgtcccgtgtcggacacgcgt-cggtgtccaacaccgacacgacac 439  Q
    |||||||||||||||||| | |||||||||||||||| ||||||||||| |||   |||||| |||||||||||||||    
T  24155 ctatgaagcacggacactcatcggattaggcgtgtccagtgtcggacacacgtgttgtgtccgacaccgacacgacac 24078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0652 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0652
Description:

Target: scaffold0652; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 364 - 434
Target Start/End: Original strand, 403 - 473
Alignment:
Q  364 tatgaagcacggacacttaccggattaggcgtgtccc-gtgtcggacacgcgtcggtgtccaacaccgacac 434  Q
    |||||||||||||||||   ||||||||| ||||||| |||||||||||||||| |||||| ||||||||||    
T  403 tatgaagcacggacactcctcggattaggtgtgtcccggtgtcggacacgcgtc-gtgtccgacaccgacac 473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0199 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 428 - 486
Target Start/End: Complemental strand, 2008 - 1950
Alignment:
Q  428 ccgacacgacacctatgattaaacaaaattatatcattttatcaaattattatccgtgt 486  Q
    ||||||||||||||||||||| || ||| ||| |||||||  |||||||||||||||||    
T  2008 ccgacacgacacctatgattacactaaaatatgtcattttcacaaattattatccgtgt 1950  T

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Target: scaffold0793 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0793
Description:

Target: scaffold0793; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 360 - 410
Target Start/End: Original strand, 4818 - 4869
Alignment:
Q  360 aatctatgaagcacggacacttaccggattaggcgtgtccc-gtgtcggaca 410  Q
    |||||||||||||||||||||   ||||||||||||||||| ||||||||||    
T  4818 aatctatgaagcacggacactcctcggattaggcgtgtccctgtgtcggaca 4869  T

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Target: scaffold0598 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0598
Description:

Target: scaffold0598; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 427 - 484
Target Start/End: Original strand, 8052 - 8109
Alignment:
Q  427 accgacacgacacctatgattaaacaaaattatatcattttatcaaattattatccgt 484  Q
    |||||||||| ||||||| ||| ||  |||||| ||||||| ||||||||||||||||    
T  8052 accgacacgatacctatgtttacactgaattatgtcattttctcaaattattatccgt 8109  T

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Target: scaffold0450 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0450
Description:

Target: scaffold0450; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 360 - 440
Target Start/End: Original strand, 8561 - 8641
Alignment:
Q  360 aatctatgaagcacggacacttaccggattaggcgtgt-cccgtgtcggacacgcgtcggtgtccaacaccgacacgacacc 440  Q
    |||||||||||||||||||||   || ||||||||||| || ||||||||||||  || |||||| | ||||||||||||||    
T  8561 aatctatgaagcacggacactcctcgaattaggcgtgtaccagtgtcggacacgtatc-gtgtccgataccgacacgacacc 8641  T

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Target: scaffold0019 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 363 - 439
Target Start/End: Complemental strand, 71855 - 71779
Alignment:
Q  363 ctatgaagcacggacacttaccggattaggcgtgtccc-gtgtcggacacgcgtcggtgtccaacaccgacacgacac 439  Q
    ||||||||||| ||||||   |||||||| |||||||| |||||||||||| ||  |||||| |||||||||||||||    
T  71855 ctatgaagcaccgacactcctcggattagtcgtgtcccggtgtcggacacgtgt-tgtgtccgacaccgacacgacac 71779  T

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