View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12657_low_5 (Length: 441)
Name: NF12657_low_5
Description: NF12657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12657_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 408; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 6 - 433
Target Start/End: Original strand, 17379263 - 17379690
Alignment:
| Q |
6 |
caacaaaaagaaatctaatttacaaaggcaatgtgccaagtgtctgtaaggaataatgtcagtccaaaatcaaaacaagctgcattttaaagccaacttc |
105 |
Q |
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| T |
17379263 |
caacaaaaagaaatctaatttacaaaggcaatgtgccaagtggctgtaaggaataatgtcagtccaaaatcaaaacaagctgcgttttaaagccaccttc |
17379362 |
T |
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| Q |
106 |
attttgagtgcatcagttgtgaacttgtgttcaagattatgtgtaaattcaagcttctgcaacaacagcagtttcttcatcagtagaatcgggtgataac |
205 |
Q |
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| T |
17379363 |
attttgagtgcatcagttgttaacttgtgttcaagattatgtgtaaattcaagcttctgcaacaacagcagtttcttcatcagtagaatcgggtgataac |
17379462 |
T |
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| Q |
206 |
atttcttccgtaacatctccaaccatctcttgtgattctgaaacggtttccgtctcagcattgagaagcttttctcgaagctttgtagttaaatcttgta |
305 |
Q |
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| T |
17379463 |
atttcttccgtaacatctccaaccatctcttgtgattctgaaacggtttccgtctcagcattgagaagcttttctcgaagctttgtagttaaatcttgta |
17379562 |
T |
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| Q |
306 |
agccatcgctgttgatcaggtgactttttagtgcatccttgccatggtaattcttgccattatattcgtaaaacgaaccactcttttttatgaatttgtg |
405 |
Q |
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| T |
17379563 |
agccatcgccgttgatcaggtgactttttagtgcatccttgccatggtaattcttgccattatattcgtaaaacgaaccactcttttttatgaatttgtg |
17379662 |
T |
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| Q |
406 |
ttttatgctcagctctataatctctgct |
433 |
Q |
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| T |
17379663 |
ttttatgctcagctctataatctctgct |
17379690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 17372031 - 17372071
Alignment:
| Q |
1 |
gccaacaacaaaaagaaatctaatttacaaaggcaatgtgc |
41 |
Q |
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| T |
17372031 |
gccaacaacaaaaagaaatctattttacagaggcagtgtgc |
17372071 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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