View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12657_low_8 (Length: 368)
Name: NF12657_low_8
Description: NF12657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12657_low_8 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 88; Significance: 3e-42; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 258 - 353
Target Start/End: Original strand, 28672103 - 28672198
Alignment:
| Q |
258 |
ggccattttcaatttattttcgatgagatttgaagtccatctctaaaggttataaaatcaaatttttatcactgaagtgacacatcatggcctatg |
353 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| |
|
|
| T |
28672103 |
ggccattttcaatttattttcgatgagatttgaagtccatctctaaaggttataaaatcaaattcttttcactgaagtgacacatcatggcctatg |
28672198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 52 - 139
Target Start/End: Original strand, 28671783 - 28671870
Alignment:
| Q |
52 |
tttttataacactttttaacaatcaatcatttattagataaaatacatatgagtctcaccatttcatgtgaaattcattttcaaaatg |
139 |
Q |
| |
|
||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
28671783 |
tttttttaacactttctaacaatcaatcatttattagataaaatacatatgagtcttaccatttcatgtgaaattcattttcaaaatg |
28671870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 157 - 191
Target Start/End: Original strand, 28672001 - 28672035
Alignment:
| Q |
157 |
aattagtgcacttgtgccccgctttggagcatttt |
191 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
28672001 |
aattagtgcacttgtgccccgctttggagcatttt |
28672035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University