View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12658_high_10 (Length: 392)
Name: NF12658_high_10
Description: NF12658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12658_high_10 |
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Alignment Details
Target: chr3 (Bit Score: 196; Significance: 1e-106; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 20 - 325
Target Start/End: Complemental strand, 40148402 - 40148082
Alignment:
| Q |
20 |
gaccaaacttgaaaataaaaaacttgaatgtgagttcctctacnnnnnnnnnnnnnnccttgaatgtgagatcttctatgtgattaaaagtaactttaac |
119 |
Q |
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| T |
40148402 |
gaccaaacttgaaaataaaaaacttgaatgtgagttcctcaacaaaaaaaaaaa---ccttgaatgtgagatcttctatgtgattaaaagtaactttaac |
40148306 |
T |
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| Q |
120 |
ccataattttatagagtaagttttacatatcgaccagtatgcttaaagttttagggttttaaatatgtttatgattcttatgagtttc------------ |
207 |
Q |
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| T |
40148305 |
ccataattttatagagtaagttttacatatcgaccagtatgcttaaagttttggggttttaaatatgtttatgattcttacgagtttcttaaaataaaaa |
40148206 |
T |
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| Q |
208 |
---ttaattttctcattctagtcatttttagaggatacaaattcttgtgatgcc--tgaggctttttaaatggtacgtatcctttac-tttcagttaaaa |
301 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
40148205 |
tacttaattttctcattctagtcatttttagaggatacaaattcttgtgatgcctatgaggctttttaaatggtacgtatcctttacttttcagttaaaa |
40148106 |
T |
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| Q |
302 |
acaacattttttaagccttaatgc |
325 |
Q |
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| T |
40148105 |
acaacattttttaagccttaatgc |
40148082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 336 - 364
Target Start/End: Complemental strand, 40148067 - 40148039
Alignment:
| Q |
336 |
gttgaagaaaatccttaatgttctctatt |
364 |
Q |
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| T |
40148067 |
gttgaagaaaatccttaatgttctctatt |
40148039 |
T |
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