View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12658_high_12 (Length: 364)
Name: NF12658_high_12
Description: NF12658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12658_high_12 |
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Alignment Details
Target: chr3 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 70 - 310
Target Start/End: Original strand, 52824696 - 52824937
Alignment:
| Q |
70 |
agatgtatacactacaggg-tgtacacaaaacgttgatgtagctctagtatgaatattttgtttgtttttgtgctcctctcaaccgggttgtgtacgttc |
168 |
Q |
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| T |
52824696 |
agatgtatacactacaggggtgtacacaaaacgttgatgtagctctagtatgaatattttgtttgtttttgtgctcctctcaaccgggttgtgtacgttc |
52824795 |
T |
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| Q |
169 |
ttcataaatcagtgtaaaatattaaatatttctttcacattttgtaaataagatctttaattgaattaaataactcaacttgattgattaatttttgttt |
268 |
Q |
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| T |
52824796 |
ttcataaatcagtgtaaaatattaaatatgtctttcacattttgtaaataagatctttaattgaattaaataactcaacttgattgattaatttttgttt |
52824895 |
T |
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| Q |
269 |
gcaacttgttaaaaggggtagtacgtcttgttaaatgggatt |
310 |
Q |
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| T |
52824896 |
gcaacttgttaaaaggggtagtacatcttgttaaatgagatt |
52824937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 310 - 358
Target Start/End: Original strand, 52824960 - 52825008
Alignment:
| Q |
310 |
tcgtgagaaggtttccaaacacatgtatacatcccacaattcatctcac |
358 |
Q |
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| T |
52824960 |
tcgtgagaaggtttccaaacacatgtatacatcccacaattcatatcac |
52825008 |
T |
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