View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12658_high_13 (Length: 322)
Name: NF12658_high_13
Description: NF12658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12658_high_13 |
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Alignment Details
Target: chr2 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 15 - 304
Target Start/End: Original strand, 36588243 - 36588532
Alignment:
| Q |
15 |
acatcaaacggaacagaaccttttgatctatcaccattaagagcgtcaaccacacgcgaatcaagataagcgttaacagcagaaaaagtagcattaagat |
114 |
Q |
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| T |
36588243 |
acatcaaacggaacagaaccttttgatctatcaccattaagagcgtcaaccacacgcgaatcaagataagcgttaacagcagaaaaagtagcattaagat |
36588342 |
T |
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| Q |
115 |
tcgcttcagatttcgtgtccattttaaacggagcaagattggattcagcgatgtagttagagtgatagaagattgaagaacggagagcgttatagttaac |
214 |
Q |
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| T |
36588343 |
tcgcttcagatttcgtgtccattttaaacggagcaagattggattcagcgatgtagttagagtgatagaagattgaagaacggagagcgttatagttaac |
36588442 |
T |
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| Q |
215 |
ggagagtttgttattaccgttacggacgttaaaggtgagacgccacgtgccggtgagggattgggaggaggtgttgaaggaggagaggga |
304 |
Q |
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| T |
36588443 |
ggagagtttgttattaccgttgcggacgttaaaggtgagacgccacgtgccggtgagggattgggaggaggtgttgaaggaggagaggga |
36588532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 86; Significance: 4e-41; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 15 - 189
Target Start/End: Complemental strand, 25613327 - 25613149
Alignment:
| Q |
15 |
acatcaaacggaacagaaccttttgatctatcaccattaagagcgtcaaccacacgcga----atcaagataagcgttaacagcagaaaaagtagcatta |
110 |
Q |
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||||||||||||||| ||||||||||||||||||| | | ||| | |||||||| ||| ||||||||| ||||||||| ||||||||| || ||| |
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| T |
25613327 |
acatcaaacggaacataaccttttgatctatcaccttgatgagaattaaccacacacgattcaatcaagatacgcgttaacaaaagaaaaagttgcgtta |
25613228 |
T |
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| Q |
111 |
agattcgcttcagatttcgtgtccattttaaacggagcaagattggattcagcgatgtagttagagtgatagaagattg |
189 |
Q |
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| T |
25613227 |
agattcgcttcagatttcatgtccattttaaaccgagcaagattcgatttagcgatgtagtttgaatgatagaagattg |
25613149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 82; Significance: 1e-38; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 24 - 189
Target Start/End: Complemental strand, 50861181 - 50861017
Alignment:
| Q |
24 |
ggaacagaaccttttgatctatcaccattaagagcgtcaaccacacgcgaatcaagataagcgttaacagcagaaaaagtagcattaagattcgcttcag |
123 |
Q |
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||||||||||||||||||||||||||||||| ||||| |||||||||||| |||||||| |||||||| ||||||| | || |||||||||| ||| |
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| T |
50861181 |
ggaacagaaccttttgatctatcaccattaatagcgttaaccacacgcgattcaagatacatgttaacagtagaaaaaattgcgttaagattcgattcta |
50861082 |
T |
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| Q |
124 |
atttcgtgtccattttaaacggagcaagattggattcagcgatgtagttagagtgatagaagattg |
189 |
Q |
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| T |
50861081 |
attttgtgtccattttaaatggagcaag-ttcgattcagagatgtagtttgaatgatagaagattg |
50861017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 15 - 123
Target Start/End: Original strand, 39073889 - 39073997
Alignment:
| Q |
15 |
acatcaaacggaacagaaccttttgatctatcaccattaagagcgtcaaccacacgcgaatcaagataagcgttaacagcagaaaaagtagcattaagat |
114 |
Q |
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||||||||||||||||||||||||||||||| ||||||||| || |||||||| ||| |||||||| ||||| ||| |||||||||| || || |||| |
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| T |
39073889 |
acatcaaacggaacagaaccttttgatctatttccattaagattgttaaccacacacgattcaagatacgcgttgacaacagaaaaagtcgcgtttagat |
39073988 |
T |
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| Q |
115 |
tcgcttcag |
123 |
Q |
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||| ||||| |
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| T |
39073989 |
tcggttcag |
39073997 |
T |
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