View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12658_high_21 (Length: 245)

Name: NF12658_high_21
Description: NF12658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12658_high_21
NF12658_high_21
[»] chr3 (4 HSPs)
chr3 (16-245)||(23331345-23331574)
chr3 (162-238)||(13957631-13957707)
chr3 (162-238)||(15387031-15387107)
chr3 (41-116)||(16020039-16020114)
[»] chr6 (3 HSPs)
chr6 (40-115)||(9343890-9343966)
chr6 (40-69)||(12639080-12639109)
chr6 (40-69)||(21302338-21302367)
[»] chr8 (3 HSPs)
chr8 (41-116)||(18445617-18445692)
chr8 (40-69)||(17462924-17462953)
chr8 (40-69)||(18774861-18774890)
[»] chr7 (4 HSPs)
chr7 (40-115)||(16156477-16156553)
chr7 (40-115)||(22708378-22708454)
chr7 (40-69)||(21369178-21369207)
chr7 (41-88)||(24462057-24462105)
[»] chr5 (2 HSPs)
chr5 (40-69)||(22821854-22821883)
chr5 (40-69)||(22822214-22822243)
[»] chr4 (1 HSPs)
chr4 (40-69)||(11475133-11475162)
[»] chr1 (1 HSPs)
chr1 (40-69)||(37259897-37259926)
[»] scaffold0308 (1 HSPs)
scaffold0308 (41-116)||(16450-16525)


Alignment Details
Target: chr3 (Bit Score: 181; Significance: 6e-98; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 16 - 245
Target Start/End: Complemental strand, 23331574 - 23331345
Alignment:
Q  16 acatcacacgccatttatgacttcgaagctttaaaatggattaaacacacaaaaattcaagtttagtgtttttcggccgaaattgatcccttacactttt 115  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||    
T  23331574 acatcacacgccatttataacttcgaagctttaaaatggattaaacacacaaaaattcaagtttaatgtttttcggctgaaattgatcccttacactttt 23331475  T
Q  116 actacgtcataattcaaatnnnnnnngagagaagttggccatgttgaaagtagcacttaccccatattcacctggaagttcgattttgaaggcattgtca 215  Q
     ||||||||||||||||||       ||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23331474 gctacgtcataattcaaataaaaaaagagagaagtcggccatgttggaagtagcacttaccccatattcacctggaagttcgattttgaaggcattgtca 23331375  T
Q  216 ttaattctagaaagtacttgaaaagtccat 245  Q
    ||||| ||||||||||||||||||||||||    
T  23331374 ttaatcctagaaagtacttgaaaagtccat 23331345  T

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Target: chr3; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 162 - 238
Target Start/End: Original strand, 13957631 - 13957707
Alignment:
Q  162 aaagtagcacttaccccatattcacctggaagttcgattttgaaggcattgtcattaattctagaaagtacttgaaa 238  Q
    ||||||| |||||| ||||| |||||||||||||| || ||| | ||||||||||||||||||||||||||||||||    
T  13957631 aaagtagtacttactccatactcacctggaagttctatcttgtaagcattgtcattaattctagaaagtacttgaaa 13957707  T

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Target: chr3; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 162 - 238
Target Start/End: Complemental strand, 15387107 - 15387031
Alignment:
Q  162 aaagtagcacttaccccatattcacctggaagttcgattttgaaggcattgtcattaattctagaaagtacttgaaa 238  Q
    ||||||| |||||| ||||| |||||||||||||| |||||| | ||||||||||| ||||||||||||||||||||    
T  15387107 aaagtagtacttactccatactcacctggaagttctattttgtaagcattgtcattgattctagaaagtacttgaaa 15387031  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 116
Target Start/End: Original strand, 16020039 - 16020114
Alignment:
Q  41 aagctttaaaatggattaaacacac-aaaaattcaagtttagtgtttttcggccgaaattgatcccttacactttta 116  Q
    |||||||||||||||| |||||||| | ||||||||  ||||||||||| ||||  ||||| |||||||||||||||    
T  16020039 aagctttaaaatggataaaacacactagaaattcaaaattagtgttttt-ggccagaattggtcccttacactttta 16020114  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 40 - 115
Target Start/End: Complemental strand, 9343966 - 9343890
Alignment:
Q  40 gaagctttaaaatggattaaacacacaaaa-attcaagtttagtgtttttcggccgaaattgatcccttacactttt 115  Q
    |||||||||||||||||||||||||||||| |  ||   ||||||||||| |||| |||||| ||||||||||||||    
T  9343966 gaagctttaaaatggattaaacacacaaaataaccacacttagtgtttttgggccaaaattggtcccttacactttt 9343890  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 69
Target Start/End: Complemental strand, 12639109 - 12639080
Alignment:
Q  40 gaagctttaaaatggattaaacacacaaaa 69  Q
    ||||||||||||||||||||||||||||||    
T  12639109 gaagctttaaaatggattaaacacacaaaa 12639080  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 69
Target Start/End: Original strand, 21302338 - 21302367
Alignment:
Q  40 gaagctttaaaatggattaaacacacaaaa 69  Q
    ||||||||||||||||||||||||||||||    
T  21302338 gaagctttaaaatggattaaacacacaaaa 21302367  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 116
Target Start/End: Complemental strand, 18445692 - 18445617
Alignment:
Q  41 aagctttaaaatggattaaacacac-aaaaattcaagtttagtgtttttcggccgaaattgatcccttacactttta 116  Q
    |||||||||||||||| |||||||| | ||||||||  ||||||||||| ||||  ||||| |||||||||||||||    
T  18445692 aagctttaaaatggataaaacacactagaaattcaaacttagtgttttt-ggccagaattggtcccttacactttta 18445617  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 69
Target Start/End: Original strand, 17462924 - 17462953
Alignment:
Q  40 gaagctttaaaatggattaaacacacaaaa 69  Q
    ||||||||||||||||||||||||||||||    
T  17462924 gaagctttaaaatggattaaacacacaaaa 17462953  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 69
Target Start/End: Original strand, 18774861 - 18774890
Alignment:
Q  40 gaagctttaaaatggattaaacacacaaaa 69  Q
    ||||||||||||||||||||||||||||||    
T  18774861 gaagctttaaaatggattaaacacacaaaa 18774890  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 115
Target Start/End: Complemental strand, 16156553 - 16156477
Alignment:
Q  40 gaagctttaaaatggattaaacacacaaaa-attcaagtttagtgtttttcggccgaaattgatcccttacactttt 115  Q
    |||||||||||||||||||||||||||||| |  ||   ||||||||||| |||| |||||| || |||||||||||    
T  16156553 gaagctttaaaatggattaaacacacaaaataaccatacttagtgtttttgggccaaaattggtctcttacactttt 16156477  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 115
Target Start/End: Original strand, 22708378 - 22708454
Alignment:
Q  40 gaagctttaaaatggattaaacacacaaaa-attcaagtttagtgtttttcggccgaaattgatcccttacactttt 115  Q
    |||||||||||||||||||||||||||||| |  ||   ||  ||||||| |||| |||||||||||||||||||||    
T  22708378 gaagctttaaaatggattaaacacacaaaataaccatacttgttgtttttgggccaaaattgatcccttacactttt 22708454  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 69
Target Start/End: Original strand, 21369178 - 21369207
Alignment:
Q  40 gaagctttaaaatggattaaacacacaaaa 69  Q
    ||||||||||||||||||||||||||||||    
T  21369178 gaagctttaaaatggattaaacacacaaaa 21369207  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 88
Target Start/End: Complemental strand, 24462105 - 24462057
Alignment:
Q  41 aagctttaaaatggattaaacacacaaa-aattcaagtttagtgttttt 88  Q
    ||||||||||||| ||||||||||||||  |||||| ||||||||||||    
T  24462105 aagctttaaaatgcattaaacacacaaattattcaaatttagtgttttt 24462057  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 69
Target Start/End: Original strand, 22821854 - 22821883
Alignment:
Q  40 gaagctttaaaatggattaaacacacaaaa 69  Q
    ||||||||||||||||||||||||||||||    
T  22821854 gaagctttaaaatggattaaacacacaaaa 22821883  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 69
Target Start/End: Original strand, 22822214 - 22822243
Alignment:
Q  40 gaagctttaaaatggattaaacacacaaaa 69  Q
    ||||||||||||||||||||||||||||||    
T  22822214 gaagctttaaaatggattaaacacacaaaa 22822243  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 69
Target Start/End: Complemental strand, 11475162 - 11475133
Alignment:
Q  40 gaagctttaaaatggattaaacacacaaaa 69  Q
    ||||||||||||||||||||||||||||||    
T  11475162 gaagctttaaaatggattaaacacacaaaa 11475133  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 69
Target Start/End: Complemental strand, 37259926 - 37259897
Alignment:
Q  40 gaagctttaaaatggattaaacacacaaaa 69  Q
    ||||||||||||||||||||||||||||||    
T  37259926 gaagctttaaaatggattaaacacacaaaa 37259897  T

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Target: scaffold0308 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0308
Description:

Target: scaffold0308; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 116
Target Start/End: Complemental strand, 16525 - 16450
Alignment:
Q  41 aagctttaaaatggattaaacacac-aaaaattcaagtttagtgtttttcggccgaaattgatcccttacactttta 116  Q
    |||||||||||||||| |||||||| | ||||||||  ||||||||||| ||||  ||||| | |||||||||||||    
T  16525 aagctttaaaatggataaaacacactataaattcaaacttagtgttttt-ggccataattggttccttacactttta 16450  T

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