View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12658_high_27 (Length: 216)
Name: NF12658_high_27
Description: NF12658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12658_high_27 |
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Alignment Details
Target: chr1 (Bit Score: 171; Significance: 5e-92; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 1 - 179
Target Start/End: Original strand, 30956052 - 30956230
Alignment:
| Q |
1 |
gaaatatgtaaaaacttctgggttataataatataaaaccctagctagtagtatataagggacagagtgtatacatataaccctccttagttgaaaaagc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| |
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| T |
30956052 |
gaaatatgtaaaaacttctgggttataataatataaaaccctagctagtagtatataaggggcagggtgtatacatataaccctccttagttgaaaaagc |
30956151 |
T |
|
| Q |
101 |
tcccacagcatagaaatcttaattacttctcaatatatacaattgcatgccatcagaaataatacataaaacatgcaat |
179 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30956152 |
tcccacagcatagaaatcttaattacttctcaatatatacaattgcatgccatcagaaataatacataaaacatgcaat |
30956230 |
T |
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