View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12658_high_3 (Length: 565)

Name: NF12658_high_3
Description: NF12658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12658_high_3
NF12658_high_3
[»] chr3 (19 HSPs)
chr3 (20-559)||(40147856-40148402)
chr3 (476-537)||(35058357-35058418)
chr3 (481-546)||(35264430-35264495)
chr3 (475-531)||(36239597-36239654)
chr3 (466-559)||(36302169-36302262)
chr3 (507-543)||(37335056-37335092)
chr3 (507-559)||(46853540-46853592)
chr3 (476-546)||(40339222-40339292)
chr3 (476-534)||(41115392-41115451)
chr3 (477-536)||(44771691-44771750)
chr3 (466-537)||(44958634-44958705)
chr3 (476-531)||(52364047-52364102)
chr3 (501-559)||(31708245-31708303)
chr3 (475-536)||(25359603-25359664)
chr3 (476-532)||(32111990-32112047)
chr3 (507-559)||(35253473-35253525)
chr3 (478-522)||(40736580-40736624)
chr3 (483-531)||(42375528-42375576)
chr3 (483-531)||(42404242-42404290)
[»] chr6 (9 HSPs)
chr6 (466-559)||(1485152-1485245)
chr6 (466-546)||(2234501-2234581)
chr6 (476-529)||(765422-765475)
chr6 (478-531)||(4910906-4910959)
chr6 (503-560)||(34027422-34027479)
chr6 (473-530)||(3436917-3436974)
chr6 (475-536)||(30927038-30927099)
chr6 (510-559)||(34898726-34898775)
chr6 (475-530)||(31305882-31305938)
[»] chr1 (13 HSPs)
chr1 (476-537)||(47892416-47892477)
chr1 (466-536)||(28083917-28083987)
chr1 (482-552)||(3515820-3515890)
chr1 (476-546)||(28287355-28287425)
chr1 (478-531)||(48549046-48549099)
chr1 (468-536)||(7790671-7790739)
chr1 (476-536)||(11049246-11049306)
chr1 (478-546)||(20026183-20026251)
chr1 (478-545)||(3016160-3016227)
chr1 (476-546)||(10324957-10325027)
chr1 (483-536)||(34915069-34915122)
chr1 (523-559)||(35548832-35548868)
chr1 (484-536)||(51500863-51500915)
[»] chr7 (12 HSPs)
chr7 (476-558)||(27571858-27571940)
chr7 (472-559)||(41386821-41386908)
chr7 (476-537)||(41788312-41788373)
chr7 (466-559)||(45005006-45005099)
chr7 (478-546)||(30182315-30182383)
chr7 (476-546)||(38123685-38123755)
chr7 (478-538)||(5489873-5489933)
chr7 (476-519)||(17111853-17111896)
chr7 (466-536)||(1410948-1411018)
chr7 (469-531)||(22195853-22195915)
chr7 (479-529)||(28725088-28725138)
chr7 (466-536)||(40491564-40491634)
[»] chr5 (10 HSPs)
chr5 (478-531)||(9818732-9818785)
chr5 (478-536)||(18851111-18851169)
chr5 (478-536)||(38845441-38845499)
chr5 (478-552)||(6951318-6951392)
chr5 (483-536)||(2937611-2937664)
chr5 (466-546)||(37121571-37121651)
chr5 (476-545)||(39097242-39097311)
chr5 (478-530)||(4848176-4848228)
chr5 (476-536)||(18637280-18637340)
chr5 (476-536)||(34250380-34250440)
[»] chr4 (14 HSPs)
chr4 (475-535)||(18597034-18597095)
chr4 (466-531)||(32818404-32818469)
chr4 (473-531)||(14596682-14596740)
chr4 (476-529)||(1616387-1616439)
chr4 (475-536)||(9134605-9134666)
chr4 (478-537)||(9064229-9064288)
chr4 (478-536)||(8604651-8604709)
chr4 (466-536)||(30357498-30357568)
chr4 (466-531)||(30472920-30472985)
chr4 (483-531)||(16643981-16644029)
chr4 (466-528)||(55927807-55927869)
chr4 (493-546)||(33843990-33844043)
chr4 (482-559)||(52965860-52965937)
chr4 (472-536)||(55186991-55187055)
[»] chr2 (10 HSPs)
chr2 (476-559)||(44439249-44439333)
chr2 (478-537)||(42740975-42741034)
chr2 (466-537)||(10618969-10619040)
chr2 (466-531)||(22535984-22536049)
chr2 (480-536)||(42982544-42982600)
chr2 (476-536)||(43501121-43501181)
chr2 (483-558)||(5533038-5533113)
chr2 (476-531)||(12037057-12037112)
chr2 (478-545)||(30503207-30503274)
chr2 (476-559)||(33019162-33019245)
[»] scaffold0005 (1 HSPs)
scaffold0005 (473-531)||(220638-220696)
[»] chr8 (12 HSPs)
chr8 (478-536)||(13384683-13384741)
chr8 (476-531)||(32994276-32994331)
chr8 (466-533)||(37684391-37684458)
chr8 (477-536)||(4662932-4662991)
chr8 (466-557)||(13418827-13418918)
chr8 (476-531)||(15677850-15677905)
chr8 (469-536)||(36200161-36200228)
chr8 (493-551)||(37153073-37153131)
chr8 (478-536)||(38868496-38868554)
chr8 (476-536)||(26100175-26100235)
chr8 (480-536)||(32927892-32927948)
chr8 (480-536)||(35494990-35495046)


Alignment Details
Target: chr3 (Bit Score: 252; Significance: 1e-140; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 20 - 559
Target Start/End: Complemental strand, 40148402 - 40147856
Alignment:
Q  20 gaccaaacttgaaaataaaaaacttgaatgtgagttcctctacnnnnnnnnnnnnnnccttgaatgtgagatcttctatgtgattaaaagtaactttaac 119  Q
    |||||||||||||||||||||||||||||||||||||||| ||              |||||||||||||||||||||||||||||||||||||||||||    
T  40148402 gaccaaacttgaaaataaaaaacttgaatgtgagttcctcaacaaaaaaaaaaa---ccttgaatgtgagatcttctatgtgattaaaagtaactttaac 40148306  T
Q  120 ccataattttatagagtaagttttacatatcgaccagtatgcttaaagttttagggttttaaatatgtttatgattcttatgagtttc------------ 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||                
T  40148305 ccataattttatagagtaagttttacatatcgaccagtatgcttaaagttttggggttttaaatatgtttatgattcttacgagtttcttaaaataaaaa 40148206  T
Q  208 ---ttaattttctcattctagtcatttttagaggatacaaattcttgtgatgcc--tgaggctttttaaatggtacgtatcctttac-tttcagttaaaa 301  Q
       |||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| ||||||||||||    
T  40148205 tacttaattttctcattctagtcatttttagaggatacaaattcttgtgatgcctatgaggctttttaaatggtacgtatcctttacttttcagttaaaa 40148106  T
Q  302 acaacattttttaagccttaatgc----nnnnnnnnnngttgaagaaaatccttaatgttctctattnnnnnnnggcagnnnnnnnnnctcttcgaacga 397  Q
    ||||||||||||||||||||||||              |||||||||||||||||||||||||||||       |||||         ||||||||||||    
T  40148105 acaacattttttaagccttaatgctttttttttttgttgttgaagaaaatccttaatgttctctattaagaaaaggcag-ttttttctctcttcgaacga 40148007  T
Q  398 gacaagatttcaatnnnnnnnngcagtataaccaataaaaacggttaaaaccacaatgttccagctcgttttgtcttcagaattgattctacttcaagct 497  Q
    ||||||||||||||        |||||||||||||||||||||||||||           ||||||| ||||||||||||||||||||||||||||||||    
T  40148006 gacaagatttcaataaaaaaaagcagtataaccaataaaaacggttaaa-----------ccagctcattttgtcttcagaattgattctacttcaagct 40147918  T
Q  498 ataatttgaagcttttgattctagaattgattttaacacttgaatttatcattcatctcact 559  Q
    | |||||| |||||||||||||||||||||||| ||||||||||||||||||||| ||||||    
T  40147917 agaatttggagcttttgattctagaattgatttcaacacttgaatttatcattcaactcact 40147856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 476 - 537
Target Start/End: Original strand, 35058357 - 35058418
Alignment:
Q  476 agaattgattctacttcaagctataatttgaagcttttgattctagaattgattttaacact 537  Q
    ||||||||||||||||  ||||| || ||  |||||||||||||||||||||||||||||||    
T  35058357 agaattgattctacttggagctagaaattcgagcttttgattctagaattgattttaacact 35058418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 481 - 546
Target Start/End: Complemental strand, 35264495 - 35264430
Alignment:
Q  481 tgattctacttcaagctataatttgaagcttttgattctagaattgattttaacacttgaatttat 546  Q
    ||||||||||| || ||| || ||  |||||||||||||||||||||||||||||||| |||||||    
T  35264495 tgattctacttgaaactagaaattagagcttttgattctagaattgattttaacacttaaatttat 35264430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 475 - 531
Target Start/End: Complemental strand, 36239654 - 36239597
Alignment:
Q  475 cagaattgattcta-cttcaagctataatttgaagcttttgattctagaattgatttt 531  Q
    |||||||| ||||| |||||| ||| ||||||||||||| ||||||||||||||||||    
T  36239654 cagaattgtttctaacttcaaactagaatttgaagctttcgattctagaattgatttt 36239597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 466 - 559
Target Start/End: Original strand, 36302169 - 36302262
Alignment:
Q  466 ttttgtcttcagaattgattctacttcaagctataatttgaagcttttgattctagaattgattttaacacttgaatttatcattcatctcact 559  Q
    ||||| ||||||| ||||||||| || |||||| |  ||| || |||||||| |||||||||||||| ||||| |||||||  |||| ||||||    
T  36302169 ttttgccttcagagttgattctatttgaagctagagattggagattttgattttagaattgattttagcacttaaatttattgttcaactcact 36302262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 507 - 543
Target Start/End: Complemental strand, 37335092 - 37335056
Alignment:
Q  507 agcttttgattctagaattgattttaacacttgaatt 543  Q
    ||||||||||||||||||||||||| |||||||||||    
T  37335092 agcttttgattctagaattgatttttacacttgaatt 37335056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 507 - 559
Target Start/End: Complemental strand, 46853592 - 46853540
Alignment:
Q  507 agcttttgattctagaattgattttaacacttgaatttatcattcatctcact 559  Q
    |||||||||||||||||||||||||||||||  |||||||  |||| ||||||    
T  46853592 agcttttgattctagaattgattttaacactcaaatttattgttcaactcact 46853540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 476 - 546
Target Start/End: Original strand, 40339222 - 40339292
Alignment:
Q  476 agaattgattctacttcaagctataatttgaagc-ttttgattctagaattgattttaacacttgaatttat 546  Q
    |||||||||||||||| |||||| |||||| ||| ||||| ||||| ||||||||||| | |||||||||||    
T  40339222 agaattgattctacttgaagctacaatttgtagctttttgcttctacaattgattttagc-cttgaatttat 40339292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 476 - 534
Target Start/End: Complemental strand, 41115451 - 41115392
Alignment:
Q  476 agaattgattctacttcaagctataatttgaagctttt-gattctagaattgattttaac 534  Q
    |||||||||||||||| |||||| |||||| ||||||| | ||||| |||||||||||||    
T  41115451 agaattgattctacttgaagctagaatttgtagcttttggcttctacaattgattttaac 41115392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 477 - 536
Target Start/End: Original strand, 44771691 - 44771750
Alignment:
Q  477 gaattgattctacttcaagctataatttgaagcttttgattctagaattgattttaacac 536  Q
    ||||||||||||| | || ||| |||||| |||||||||||||| |||||||||| ||||    
T  44771691 gaattgattctacctaaatctagaatttgtagcttttgattctaaaattgatttttacac 44771750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 466 - 537
Target Start/End: Complemental strand, 44958705 - 44958634
Alignment:
Q  466 ttttgtcttcagaattgattctacttcaagctataatttgaagcttttgattctagaattgattttaacact 537  Q
    ||||| || |||| |||||||||||  | |||| || ||| ||||||||||||||||| |||||||||||||    
T  44958705 ttttgcctccagagttgattctactcgatgctagaaattggagcttttgattctagaaatgattttaacact 44958634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 476 - 531
Target Start/End: Original strand, 52364047 - 52364102
Alignment:
Q  476 agaattgattctacttcaagctataatttgaagcttttgattctagaattgatttt 531  Q
    ||||||| |||||||| ||||||| ||||  |||||||||||||| ||||||||||    
T  52364047 agaattgtttctacttgaagctatgatttatagcttttgattctataattgatttt 52364102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 501 - 559
Target Start/End: Complemental strand, 31708303 - 31708245
Alignment:
Q  501 atttgaagcttttgattctagaattgattttaacacttgaatttatcattcatctcact 559  Q
    ||||| ||||||||||||||||||||||| ||||||   ||||||| ||||| ||||||    
T  31708303 atttgtagcttttgattctagaattgattctaacacacaaatttataattcaactcact 31708245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 475 - 536
Target Start/End: Complemental strand, 25359664 - 25359603
Alignment:
Q  475 cagaattgattctacttcaagctataatttgaagcttttgattctagaattgattttaacac 536  Q
    ||||||||||||||||| ||| || |||||| || |||| |||||| |||||||||| ||||    
T  25359664 cagaattgattctacttgaagttagaatttgtagttttttattctataattgattttcacac 25359603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 476 - 532
Target Start/End: Original strand, 32111990 - 32112047
Alignment:
Q  476 agaattgattctacttcaagctataatttgaagctttt-gattctagaattgatttta 532  Q
    |||||||||||||||| |||||| |||||| ||||||| | || ||||||||||||||    
T  32111990 agaattgattctacttgaagctacaatttgtagcttttggcttttagaattgatttta 32112047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 507 - 559
Target Start/End: Complemental strand, 35253525 - 35253473
Alignment:
Q  507 agcttttgattctagaattgattttaacacttgaatttatcattcatctcact 559  Q
    ||||| || |||||||||||||||| |||||  ||||||||||||| ||||||    
T  35253525 agcttctggttctagaattgatttttacactcaaatttatcattcaactcact 35253473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 478 - 522
Target Start/End: Complemental strand, 40736624 - 40736580
Alignment:
Q  478 aattgattctacttcaagctataatttgaagcttttgattctaga 522  Q
    |||||||||||||| || ||||||||||  |||||||||||||||    
T  40736624 aattgattctacttgaaactataatttgtcgcttttgattctaga 40736580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 483 - 531
Target Start/End: Original strand, 42375528 - 42375576
Alignment:
Q  483 attctacttcaagctataatttgaagcttttgattctagaattgatttt 531  Q
    ||||||||| ||||||||||||| ||| ||||||  |||||||||||||    
T  42375528 attctacttgaagctataatttgtagcgtttgatcatagaattgatttt 42375576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 483 - 531
Target Start/End: Original strand, 42404242 - 42404290
Alignment:
Q  483 attctacttcaagctataatttgaagcttttgattctagaattgatttt 531  Q
    ||||||||| ||||||||||||| ||| ||||||  |||||||||||||    
T  42404242 attctacttgaagctataatttgtagcgtttgatcatagaattgatttt 42404290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 6e-17; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 466 - 559
Target Start/End: Complemental strand, 1485245 - 1485152
Alignment:
Q  466 ttttgtcttcagaattgattctacttcaagctataatttgaagcttttgattctagaattgattttaacacttgaatttatcattcatctcact 559  Q
    ||||| ||| |||||||||||||||| || ||| || ||| |||||||||||||||||||||||||||||||  |||||||  |||| ||||||    
T  1485245 ttttgcctttagaattgattctacttgaatctagaaattggagcttttgattctagaattgattttaacactcaaatttattgttcaactcact 1485152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 466 - 546
Target Start/End: Original strand, 2234501 - 2234581
Alignment:
Q  466 ttttgtcttcagaattgattctacttcaagctataatttgaagcttttgattctagaattgattttaacacttgaatttat 546  Q
    ||||| ||||| ||||||||| |||| |||||| ||  ||||||||||||||||||||||||||||||||||  |||||||    
T  2234501 ttttgccttcaaaattgattcaacttgaagctaaaaactgaagcttttgattctagaattgattttaacactcaaatttat 2234581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 476 - 529
Target Start/End: Complemental strand, 765475 - 765422
Alignment:
Q  476 agaattgattctacttcaagctataatttgaagcttttgattctagaattgatt 529  Q
    |||||||||||||||| ||||||| ||||| |||||||||||||||||||||||    
T  765475 agaattgattctacttgaagctatgatttgtagcttttgattctagaattgatt 765422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 478 - 531
Target Start/End: Original strand, 4910906 - 4910959
Alignment:
Q  478 aattgattctacttcaagctataatttgaagcttttgattctagaattgatttt 531  Q
    |||||||||||||| ||||||| ||||| |||||||||||||||||||||||||    
T  4910906 aattgattctacttgaagctatgatttgtagcttttgattctagaattgatttt 4910959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 503 - 560
Target Start/End: Complemental strand, 34027479 - 34027422
Alignment:
Q  503 ttgaagcttttgattctagaattgattttaacacttgaatttatcattcatctcactc 560  Q
    ||||||||||||||||||||||||||||| |||||  ||||||| ||||| |||||||    
T  34027479 ttgaagcttttgattctagaattgatttttacactcaaatttattattcaactcactc 34027422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 473 - 530
Target Start/End: Complemental strand, 3436974 - 3436917
Alignment:
Q  473 ttcagaattgattctacttcaagctataatttgaagcttttgattctagaattgattt 530  Q
    |||| ||||||||||| || || |||||||||| | |||||||||||| |||||||||    
T  3436974 ttcaaaattgattctagttgaatctataatttgtaacttttgattctataattgattt 3436917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 475 - 536
Target Start/End: Original strand, 30927038 - 30927099
Alignment:
Q  475 cagaattgattctacttcaagctataatttgaagcttttgattctagaattgattttaacac 536  Q
    ||||||||||| ||||| ||||||  ||| | ||||||||||| ||||||||||||| ||||    
T  30927038 cagaattgattatacttgaagctaagattcgtagcttttgattatagaattgatttttacac 30927099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 510 - 559
Target Start/End: Original strand, 34898726 - 34898775
Alignment:
Q  510 ttttgattctagaattgattttaacacttgaatttatcattcatctcact 559  Q
    |||| ||||||||||||||||||||||| ||||||||  |||| ||||||    
T  34898726 tttttattctagaattgattttaacactcgaatttattgttcaactcact 34898775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 475 - 530
Target Start/End: Complemental strand, 31305938 - 31305882
Alignment:
Q  475 cagaattgattcta-cttcaagctataatttgaagcttttgattctagaattgattt 530  Q
    ||||| |||||||| ||| |||||| || ||| ||||||||||||||||||||||||    
T  31305938 cagaactgattctaacttgaagctaaaaattggagcttttgattctagaattgattt 31305882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 6e-17; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 476 - 537
Target Start/End: Complemental strand, 47892477 - 47892416
Alignment:
Q  476 agaattgattctacttcaagctataatttgaagcttttgattctagaattgattttaacact 537  Q
    |||| ||||||||||| |||||| || |||||||||||||||||||||||||||||||||||    
T  47892477 agaactgattctacttaaagctagaaattgaagcttttgattctagaattgattttaacact 47892416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 466 - 536
Target Start/End: Complemental strand, 28083987 - 28083917
Alignment:
Q  466 ttttgtcttcagaattgattctacttcaagctataatttgaagcttttgattctagaattgattttaacac 536  Q
    ||||||||||  |||||||||||||| |||||| |||||| |||||||||||||| |||| ||||| ||||    
T  28083987 ttttgtcttcgtaattgattctacttgaagctagaatttgtagcttttgattctataattaatttttacac 28083917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 482 - 552
Target Start/End: Original strand, 3515820 - 3515890
Alignment:
Q  482 gattctacttcaagctataatttgaagcttttgattctagaattgattttaacacttgaatttatcattca 552  Q
    |||||||||| |||||| || ||| ||||||| ||||||||||||||||| |||||  || ||||||||||    
T  3515820 gattctacttgaagctagaaattgtagcttttcattctagaattgatttttacactcaaaattatcattca 3515890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 476 - 546
Target Start/End: Complemental strand, 28287425 - 28287355
Alignment:
Q  476 agaattgattctacttcaagctataatttgaagcttttgattctagaattgattttaacacttgaatttat 546  Q
    ||||||| |||||||| |||| |  ||||| ||||||||||| |||||||||||||||||||  |||||||    
T  28287425 agaattggttctacttgaagcaaggatttgtagcttttgattttagaattgattttaacactcaaatttat 28287355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 478 - 531
Target Start/End: Complemental strand, 48549099 - 48549046
Alignment:
Q  478 aattgattctacttcaagctataatttgaagcttttgattctagaattgatttt 531  Q
    |||||||||||||| |||||| || ||| ||||| |||||||||||||||||||    
T  48549099 aattgattctacttgaagctagaaattgtagcttctgattctagaattgatttt 48549046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 468 - 536
Target Start/End: Complemental strand, 7790739 - 7790671
Alignment:
Q  468 ttgtcttcagaattgattctacttcaagctataatttgaagcttttgattctagaattgattttaacac 536  Q
    ||||||| |||||||||||||||| ||| ||| ||||| || ||| ||||||| |||||||||| ||||    
T  7790739 ttgtctttagaattgattctacttgaagttatgatttgtagatttagattctataattgatttttacac 7790671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 476 - 536
Target Start/End: Original strand, 11049246 - 11049306
Alignment:
Q  476 agaattgattctacttcaagctataatttgaagcttttgattctagaattgattttaacac 536  Q
    ||||| |||||||||| ||||||  ||||| |||||||||||||| |||||||||| ||||    
T  11049246 agaatcgattctacttgaagctaggatttgtagcttttgattctaaaattgatttttacac 11049306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 478 - 546
Target Start/End: Complemental strand, 20026251 - 20026183
Alignment:
Q  478 aattgattctacttcaagctataatttgaagcttttgattctagaattgattttaacacttgaatttat 546  Q
    |||||||||||||| |||||| || || |||||||| | |||||||||||||| ||||||  |||||||    
T  20026251 aattgattctacttgaagctagaaattcaagcttttaactctagaattgatttgaacactcaaatttat 20026183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 478 - 545
Target Start/End: Original strand, 3016160 - 3016227
Alignment:
Q  478 aattgattctacttcaagctataatttgaagcttttgattctagaattgattttaacacttgaattta 545  Q
    |||||||||||||| ||  || |||||| |||||||||||||||||||||| || |||| | ||||||    
T  3016160 aattgattctacttgaacttagaatttgtagcttttgattctagaattgatgtttacacataaattta 3016227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 476 - 546
Target Start/End: Complemental strand, 10325027 - 10324957
Alignment:
Q  476 agaattgattctacttcaagctataatttgaagcttttgattctagaattgattttaacacttgaatttat 546  Q
    |||||||| ||||||| ||| || || ||| |||||||||||||| |||||||||| |||||  |||||||    
T  10325027 agaattgagtctacttgaagatagaaattgtagcttttgattctataattgatttttacactcaaatttat 10324957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 483 - 536
Target Start/End: Original strand, 34915069 - 34915122
Alignment:
Q  483 attctacttcaagctataatttgaagcttttgattctagaattgattttaacac 536  Q
    |||||| || |||||||  |||| ||||||||||||||||||||||| ||||||    
T  34915069 attctagttgaagctattctttgtagcttttgattctagaattgattctaacac 34915122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 523 - 559
Target Start/End: Original strand, 35548832 - 35548868
Alignment:
Q  523 attgattttaacacttgaatttatcattcatctcact 559  Q
    |||||||||||||||| ||||||||||||| ||||||    
T  35548832 attgattttaacacttaaatttatcattcaactcact 35548868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 484 - 536
Target Start/End: Complemental strand, 51500915 - 51500863
Alignment:
Q  484 ttctacttcaagctataatttgaagcttttgattctagaattgattttaacac 536  Q
    |||||||| || |||  ||||| ||||||||||||||||||||||||| ||||    
T  51500915 ttctacttgaacctaggatttgtagcttttgattctagaattgatttttacac 51500863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 476 - 558
Target Start/End: Original strand, 27571858 - 27571940
Alignment:
Q  476 agaattgattctacttcaagctataatttgaagcttttgattctagaattgattttaacacttgaatttatcattcatctcac 558  Q
    |||||||||||||||| ||| || || ||| |||||||||||||||||||||||||||||||  | ||||| ||||| |||||    
T  27571858 agaattgattctacttgaagttagaaattggagcttttgattctagaattgattttaacactcaagtttattattcaactcac 27571940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 472 - 559
Target Start/End: Complemental strand, 41386908 - 41386821
Alignment:
Q  472 cttcagaattgattctacttcaagctataatttgaagcttttgattctagaattgattttaacacttgaatttatcattcatctcact 559  Q
    |||||||||||||||||||| ||||||  ||||| ||||||| |||||||||||||| || ||||   ||||||| ||||| ||||||    
T  41386908 cttcagaattgattctacttgaagctaggatttgtagcttttaattctagaattgatatttacacacaaatttataattcaactcact 41386821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 476 - 537
Target Start/End: Original strand, 41788312 - 41788373
Alignment:
Q  476 agaattgattctacttcaagctataatttgaagcttttgattctagaattgattttaacact 537  Q
    |||||||||||||||| |||||| || ||||| ||||||| |||| ||||||||||||||||    
T  41788312 agaattgattctacttaaagctagaaattgaaacttttgagtctataattgattttaacact 41788373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 466 - 559
Target Start/End: Original strand, 45005006 - 45005099
Alignment:
Q  466 ttttgtcttcagaattgattctacttcaagctataatttgaagcttttgattctagaattgattttaacacttgaatttatcattcatctcact 559  Q
    ||||| |||||||||||||||||||| |||||| || ||| ||  ||||||| |||||||||| ||| ||||  ||||||| ||||| ||||||    
T  45005006 ttttgccttcagaattgattctacttgaagctaaaaattggaggctttgattatagaattgatcttagcactcaaatttattattcaactcact 45005099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 478 - 546
Target Start/End: Complemental strand, 30182383 - 30182315
Alignment:
Q  478 aattgattctacttcaagctataatttgaagcttttgattctagaattgattttaacacttgaatttat 546  Q
    |||||||||||||| |||||| || ||| ||||||||||||||||||| ||||| |||||  |||||||    
T  30182383 aattgattctacttgaagctaaaaattgtagcttttgattctagaattaatttttacactcaaatttat 30182315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 476 - 546
Target Start/End: Complemental strand, 38123755 - 38123685
Alignment:
Q  476 agaattgattctacttcaagctataatttgaagcttttgattctagaattgattttaacacttgaatttat 546  Q
    |||||||||||||||| |||||| || ||| ||||| | ||||||||||||||||| |||||  |||||||    
T  38123755 agaattgattctacttgaagctagaaattgtagcttctaattctagaattgatttttacactcaaatttat 38123685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 478 - 538
Target Start/End: Complemental strand, 5489933 - 5489873
Alignment:
Q  478 aattgattctacttcaagctataatttgaagcttttgattctagaattgattttaacactt 538  Q
    |||||||||||||| | |||| || ||| ||||||||||| || |||||||||||||||||    
T  5489933 aattgattctacttgatgctagaaattggagcttttgattatataattgattttaacactt 5489873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 476 - 519
Target Start/End: Original strand, 17111853 - 17111896
Alignment:
Q  476 agaattgattctacttcaagctataatttgaagcttttgattct 519  Q
    |||||||||||||||| ||||||| ||||| |||||||||||||    
T  17111853 agaattgattctacttgaagctatgatttgtagcttttgattct 17111896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 466 - 536
Target Start/End: Original strand, 1410948 - 1411018
Alignment:
Q  466 ttttgtcttcagaattgattctacttcaagctataatttgaagcttttgattctagaattgattttaacac 536  Q
    ||||| ||| ||||||||||||| || ||| ||||||||| || ||||| || ||||||||||||| ||||    
T  1410948 ttttgcctttagaattgattctatttgaagttataatttgtagattttgtttttagaattgattttcacac 1411018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 469 - 531
Target Start/End: Original strand, 22195853 - 22195915
Alignment:
Q  469 tgtcttcagaattgattctacttcaagctataatttgaagcttttgattctagaattgatttt 531  Q
    |||| ||| |||||||| ||||| ||||||| ||||| | |||||||||||| ||||||||||    
T  22195853 tgtcctcaaaattgattttactttaagctatgatttgtaacttttgattctaaaattgatttt 22195915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 479 - 529
Target Start/End: Complemental strand, 28725138 - 28725088
Alignment:
Q  479 attgattctacttcaagctataatttgaagcttttgattctagaattgatt 529  Q
    ||||||| ||||| |||||| |||||| |||||||||||||| ||||||||    
T  28725138 attgattatacttgaagctagaatttgtagcttttgattctataattgatt 28725088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 466 - 536
Target Start/End: Original strand, 40491564 - 40491634
Alignment:
Q  466 ttttgtcttcagaattgattctacttcaagctataatttgaagcttttgattctagaattgattttaacac 536  Q
    ||||| |||||||||||| ||||||| ||| ||   |||| ||||||||||||||||||||| ||| ||||    
T  40491564 ttttgccttcagaattgactctacttgaagttaagttttgtagcttttgattctagaattgacttttacac 40491634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 478 - 531
Target Start/End: Original strand, 9818732 - 9818785
Alignment:
Q  478 aattgattctacttcaagctataatttgaagcttttgattctagaattgatttt 531  Q
    |||||||||||||| ||||||| ||||| |||||||||||||||||||||||||    
T  9818732 aattgattctacttgaagctatgatttgtagcttttgattctagaattgatttt 9818785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 478 - 536
Target Start/End: Complemental strand, 18851169 - 18851111
Alignment:
Q  478 aattgattctacttcaagctataatttgaagcttttgattctagaattgattttaacac 536  Q
    |||||||||||||| ||||||| ||||| ||||||||||| ||||||||||||| ||||    
T  18851169 aattgattctacttgaagctatgatttgtagcttttgattatagaattgattttcacac 18851111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 478 - 536
Target Start/End: Original strand, 38845441 - 38845499
Alignment:
Q  478 aattgattctacttcaagctataatttgaagcttttgattctagaattgattttaacac 536  Q
    |||||||||||||| ||||||  ||||| || |||||||||||||||||||||| ||||    
T  38845441 aattgattctacttgaagctaagatttgtagtttttgattctagaattgattttcacac 38845499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 478 - 552
Target Start/End: Complemental strand, 6951392 - 6951318
Alignment:
Q  478 aattgattctacttcaagctataatttgaagcttttgattctagaattgattttaacacttgaatttatcattca 552  Q
    |||||||||||||| ||| ||  ||||| |||||||||||||| |||||||||  |||| | ||||||| |||||    
T  6951392 aattgattctacttgaagttaggatttgtagcttttgattctataattgatttgtacacataaatttataattca 6951318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 483 - 536
Target Start/End: Complemental strand, 2937664 - 2937611
Alignment:
Q  483 attctacttcaagctataatttgaagcttttgattctagaattgattttaacac 536  Q
    ||||||||| ||||||  ||||| ||| ||||||||||||||||||| ||||||    
T  2937664 attctacttaaagctactatttgtagcctttgattctagaattgattataacac 2937611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 466 - 546
Target Start/End: Original strand, 37121571 - 37121651
Alignment:
Q  466 ttttgtcttcagaattgattcta-cttcaagctataatttgaagcttttgattctagaattgattttaacacttgaatttat 546  Q
    ||||| || ||||| |||||||| ||| || |||||| |||||||||||||| ||||||||||| || |||||| |||||||    
T  37121571 ttttgactccagaaatgattctaacttaaacctataaattgaagcttttgat-ctagaattgatctttacacttaaatttat 37121651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 476 - 545
Target Start/End: Original strand, 39097242 - 39097311
Alignment:
Q  476 agaattgattctacttcaagctataatttgaagcttttgattctagaattgattttaacacttgaattta 545  Q
    |||||||||||||||| |||||| |||||| | ||||| ||| || |||||||||| |||| | ||||||    
T  39097242 agaattgattctacttgaagctaaaatttgtaacttttaattatataattgattttcacacataaattta 39097311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 478 - 530
Target Start/End: Complemental strand, 4848228 - 4848176
Alignment:
Q  478 aattgattctacttcaagctataatttgaagcttttgattctagaattgattt 530  Q
    |||||||||||||| ||||||||| |||||| |||| ||| | ||||||||||    
T  4848228 aattgattctacttaaagctataaattgaagattttaatttttgaattgattt 4848176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 476 - 536
Target Start/End: Original strand, 18637280 - 18637340
Alignment:
Q  476 agaattgattctacttcaagctataatttgaagcttttgattctagaattgattttaacac 536  Q
    ||||||||||| |||| ||||||  ||  | ||||||||||||||||||||||||| ||||    
T  18637280 agaattgattccacttgaagctaagataagtagcttttgattctagaattgatttttacac 18637340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 476 - 536
Target Start/End: Complemental strand, 34250440 - 34250380
Alignment:
Q  476 agaattgattctacttcaagctataatttgaagcttttgattctagaattgattttaacac 536  Q
    |||||||||||||||| | |||| || ||| |||||||||||||| ||||| |||| ||||    
T  34250440 agaattgattctacttgatgctagaaattgtagcttttgattctacaattgtttttcacac 34250380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 475 - 535
Target Start/End: Original strand, 18597034 - 18597095
Alignment:
Q  475 cagaattgattcta-cttcaagctataatttgaagcttttgattctagaattgattttaaca 535  Q
    |||||||||||||| ||| ||||||||||||||| |||||||||||| ||||||||||||||    
T  18597034 cagaattgattctaacttgaagctataatttgaaccttttgattctataattgattttaaca 18597095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 466 - 531
Target Start/End: Complemental strand, 32818469 - 32818404
Alignment:
Q  466 ttttgtcttcagaattgattctacttcaagctataatttgaagcttttgattctagaattgatttt 531  Q
    ||||| || |||||||||||||| || |||||| |||||| |||||||||||||||||||||||||    
T  32818469 ttttgcctccagaattgattctatttgaagctagaatttgtagcttttgattctagaattgatttt 32818404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 473 - 531
Target Start/End: Original strand, 14596682 - 14596740
Alignment:
Q  473 ttcagaattgattctacttcaagctataatttgaagcttttgattctagaattgatttt 531  Q
    ||||||||||||||||||| |||||||  |||| || ||||||||||||||||||||||    
T  14596682 ttcagaattgattctacttgaagctatgttttgcagtttttgattctagaattgatttt 14596740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 476 - 529
Target Start/End: Original strand, 1616387 - 1616439
Alignment:
Q  476 agaattgattctacttcaagctataatttgaagcttttgattctagaattgatt 529  Q
    |||||||||||||||| |||||| |||||| |||||||||||||||||||||||    
T  1616387 agaattgattctactt-aagctacaatttgtagcttttgattctagaattgatt 1616439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 475 - 536
Target Start/End: Original strand, 9134605 - 9134666
Alignment:
Q  475 cagaattgattctacttcaagctataatttgaagcttttgattctagaattgattttaacac 536  Q
    |||||||||| |||||| |||||| |||||| ||||||||||| ||||||||||||| ||||    
T  9134605 cagaattgatcctacttgaagctaaaatttgtagcttttgattttagaattgattttcacac 9134666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 478 - 537
Target Start/End: Original strand, 9064229 - 9064288
Alignment:
Q  478 aattgattctacttcaagctataatttgaagcttttgattctagaattgattttaacact 537  Q
    |||||||||||||| || ||| |||||| || |||||||||||||||||||||| |||||    
T  9064229 aattgattctacttgaaactagaatttgtagtttttgattctagaattgattttcacact 9064288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 478 - 536
Target Start/End: Complemental strand, 8604709 - 8604651
Alignment:
Q  478 aattgattctacttcaagctataatttgaagcttttgattctagaattgattttaacac 536  Q
    |||||||||||||| ||||||  ||||| |||||| |||||||||||||||||| ||||    
T  8604709 aattgattctacttgaagctaagatttgtagctttcgattctagaattgattttcacac 8604651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 466 - 536
Target Start/End: Original strand, 30357498 - 30357568
Alignment:
Q  466 ttttgtcttcagaattgattctacttcaagctataatttgaagcttttgattctagaattgattttaacac 536  Q
    |||| |||| |||||||||||||||| ||||| | ||||| ||||||||||| || |||||||||| ||||    
T  30357498 ttttatctttagaattgattctacttgaagctgtgatttgtagcttttgattatataattgatttttacac 30357568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 466 - 531
Target Start/End: Original strand, 30472920 - 30472985
Alignment:
Q  466 ttttgtcttcagaattgattctacttcaagctataatttgaagcttttgattctagaattgatttt 531  Q
    |||| |||||| |||||||| ||||||||| || |||||| || |||||||| |||||||||||||    
T  30472920 ttttatcttcaaaattgattttacttcaagttagaatttgtagtttttgattttagaattgatttt 30472985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 483 - 531
Target Start/End: Original strand, 16643981 - 16644029
Alignment:
Q  483 attctacttcaagctataatttgaagcttttgattctagaattgatttt 531  Q
    ||||||||| ||||||||||||  || ||||||||||||||||||||||    
T  16643981 attctacttgaagctataatttatagattttgattctagaattgatttt 16644029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 466 - 528
Target Start/End: Complemental strand, 55927869 - 55927807
Alignment:
Q  466 ttttgtcttcagaattgattctacttcaagctataatttgaagcttttgattctagaattgat 528  Q
    ||||| ||||||||||||||| |||| | |||| || ||| ||||| ||||||||||||||||    
T  55927869 ttttgccttcagaattgattccacttgaggctaaaaattgtagcttctgattctagaattgat 55927807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 493 - 546
Target Start/End: Original strand, 33843990 - 33844043
Alignment:
Q  493 aagctataatttgaagcttttgattctagaattgattttaacacttgaatttat 546  Q
    |||||| || ||| |||||||||||||| ||||||||||||||||  |||||||    
T  33843990 aagctagaaattggagcttttgattctaaaattgattttaacactcaaatttat 33844043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 482 - 559
Target Start/End: Complemental strand, 52965937 - 52965860
Alignment:
Q  482 gattctacttcaagctataatttgaagcttttgattctagaattgattttaacacttgaatttatcattcatctcact 559  Q
    |||||||||| ||| ||  ||||  |||||||||||||| |||||||| |||||| | ||||||| ||||| ||||||    
T  52965937 gattctacttgaagttactatttatagcttttgattctaaaattgattctaacacataaatttataattcaactcact 52965860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 472 - 536
Target Start/End: Complemental strand, 55187055 - 55186991
Alignment:
Q  472 cttcagaattgattctacttcaagctataatttgaagcttttgattctagaattgattttaacac 536  Q
    |||||||||||||||||||| ||| ||  ||||| | ||||| ||| ||||||||||||| ||||    
T  55187055 cttcagaattgattctacttgaagttaggatttgtaacttttaattatagaattgattttcacac 55186991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 476 - 559
Target Start/End: Original strand, 44439249 - 44439333
Alignment:
Q  476 agaattgattcta-cttcaagctataatttgaagcttttgattctagaattgattttaacacttgaatttatcattcatctcact 559  Q
    ||||||||||||| ||| |||||| |||||| |||||||||||||| ||||||||||||||||  |||||||  |||| ||||||    
T  44439249 agaattgattctaacttgaagctaaaatttggagcttttgattctaaaattgattttaacactcaaatttattgttcaactcact 44439333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 478 - 537
Target Start/End: Original strand, 42740975 - 42741034
Alignment:
Q  478 aattgattctacttcaagctataatttgaagcttttgattctagaattgattttaacact 537  Q
    |||||||||||||| ||||||  ||||| ||||||||||||||||||||||||| |||||    
T  42740975 aattgattctacttgaagctaagatttgtagcttttgattctagaattgatttttacact 42741034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 466 - 537
Target Start/End: Complemental strand, 10619040 - 10618969
Alignment:
Q  466 ttttgtcttcagaattgattctacttcaagctataatttgaagcttttgattctagaattgattttaacact 537  Q
    ||||| ||| ||||||||||||| || |||||| || ||  |||||||||||||| ||||||||||||||||    
T  10619040 ttttgcctttagaattgattctagttgaagctagaaattagagcttttgattctataattgattttaacact 10618969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 466 - 531
Target Start/End: Original strand, 22535984 - 22536049
Alignment:
Q  466 ttttgtcttcagaattgattctacttcaagctataatttgaagcttttgattctagaattgatttt 531  Q
    ||||| ||| |||||||||||||||| ||  || |||||||||||||||||| ||||||| |||||    
T  22535984 ttttgcctttagaattgattctacttgaatttagaatttgaagcttttgattttagaattaatttt 22536049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 480 - 536
Target Start/End: Original strand, 42982544 - 42982600
Alignment:
Q  480 ttgattctacttcaagctataatttgaagcttttgattctagaattgattttaacac 536  Q
    |||||||||||| |||||| || ||| |||||||||||| |||||||||||| ||||    
T  42982544 ttgattctacttgaagctagaaattgtagcttttgattccagaattgatttttacac 42982600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 476 - 536
Target Start/End: Original strand, 43501121 - 43501181
Alignment:
Q  476 agaattgattctacttcaagctataatttgaagcttttgattctagaattgattttaacac 536  Q
    |||||||||||||||| || |||  ||||| ||||||||||| ||||||||||| ||||||    
T  43501121 agaattgattctacttgaaactaggatttgtagcttttgattttagaattgattctaacac 43501181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 483 - 558
Target Start/End: Complemental strand, 5533113 - 5533038
Alignment:
Q  483 attctacttcaagctataatttgaagcttttgattctagaattgattttaacacttgaatttatcattcatctcac 558  Q
    ||||||||| ||||||  ||||| |||||||||||||  ||||||||| ||||| | ||||||| ||||| |||||    
T  5533113 attctacttgaagctactatttgtagcttttgattcttaaattgatttaaacacataaatttataattcaactcac 5533038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 476 - 531
Target Start/End: Original strand, 12037057 - 12037112
Alignment:
Q  476 agaattgattctacttcaagctataatttgaagcttttgattctagaattgatttt 531  Q
    ||||||||||||| || || ||| |||||| |||||||||||||| ||||||||||    
T  12037057 agaattgattctagttgaaactaaaatttgtagcttttgattctacaattgatttt 12037112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 478 - 545
Target Start/End: Original strand, 30503207 - 30503274
Alignment:
Q  478 aattgattctacttcaagctataatttgaagcttttgattctagaattgattttaacacttgaattta 545  Q
    |||||||||||||| |||| |  ||| | |||||||||||| |||||||||||| |||| ||||||||    
T  30503207 aattgattctacttgaagccaggattcgtagcttttgattcaagaattgatttttacacatgaattta 30503274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 476 - 559
Target Start/End: Complemental strand, 33019245 - 33019162
Alignment:
Q  476 agaattgattctacttcaagctataatttgaagcttttgattctagaattgattttaacacttgaatttatcattcatctcact 559  Q
    |||||||||| || || |||||| |||||| |||||||| || ||||||||||||| |||| | |||||||  |||| ||||||    
T  33019245 agaattgattatatttgaagctagaatttgtagcttttggttttagaattgattttcacacataaatttatagttcaactcact 33019162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 473 - 531
Target Start/End: Complemental strand, 220696 - 220638
Alignment:
Q  473 ttcagaattgattctacttcaagctataatttgaagcttttgattctagaattgatttt 531  Q
    ||||||||||||||||||| |||||||  |||| || ||||||||||||||||||||||    
T  220696 ttcagaattgattctacttgaagctatgttttgcagtttttgattctagaattgatttt 220638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 478 - 536
Target Start/End: Complemental strand, 13384741 - 13384683
Alignment:
Q  478 aattgattctacttcaagctataatttgaagcttttgattctagaattgattttaacac 536  Q
    ||||||||||| || |||||| |||||| ||||||||||||||||||||||||| ||||    
T  13384741 aattgattctatttgaagctaaaatttgtagcttttgattctagaattgattttcacac 13384683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 476 - 531
Target Start/End: Complemental strand, 32994331 - 32994276
Alignment:
Q  476 agaattgattctacttcaagctataatttgaagcttttgattctagaattgatttt 531  Q
    |||||||||||||||| ||||||| ||||  ||||||||| |||||||||||||||    
T  32994331 agaattgattctacttgaagctatgatttctagcttttgagtctagaattgatttt 32994276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 466 - 533
Target Start/End: Original strand, 37684391 - 37684458
Alignment:
Q  466 ttttgtcttcagaattgattctacttcaagctataatttgaagcttttgattctagaattgattttaa 533  Q
    |||||||| ||||||||||||||||| ||| ||  |||||  ||||||||||||| ||||||||||||    
T  37684391 ttttgtctccagaattgattctacttgaagttaggatttgtggcttttgattctaaaattgattttaa 37684458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 477 - 536
Target Start/End: Complemental strand, 4662991 - 4662932
Alignment:
Q  477 gaattgattctacttcaagctataatttgaagcttttgattctagaattgattttaacac 536  Q
    ||||| ||||||||| ||||||  ||||| |||||||| |||||||||||||||| ||||    
T  4662991 gaatttattctacttgaagctaggatttgtagcttttgtttctagaattgatttttacac 4662932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 466 - 557
Target Start/End: Complemental strand, 13418918 - 13418827
Alignment:
Q  466 ttttgtcttcagaattgattctacttcaagctataatttgaagcttttgattctagaattgattttaacacttgaatttatcattcatctca 557  Q
    ||||||||||| |||||||||||||| |||  | || | | |||||||||||| | |||||||||||||| |  |||||||| |||| ||||    
T  13418918 ttttgtcttcaaaattgattctacttaaagtaagaaatcggagcttttgattccataattgattttaacattcaaatttatcgttcaactca 13418827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 476 - 531
Target Start/End: Complemental strand, 15677905 - 15677850
Alignment:
Q  476 agaattgattctacttcaagctataatttgaagcttttgattctagaattgatttt 531  Q
    |||||||||||||||| ||||||  ||||  ||||||||||| |||||||||||||    
T  15677905 agaattgattctacttgaagctaggatttatagcttttgattatagaattgatttt 15677850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 469 - 536
Target Start/End: Complemental strand, 36200228 - 36200161
Alignment:
Q  469 tgtcttcagaattgattctacttcaagctataatttgaagcttttgattctagaattgattttaacac 536  Q
    ||||| |||||||||||| |||| ||| ||| |||||  | |||||||||||||||||||||| ||||    
T  36200228 tgtctccagaattgattcaacttgaagttatgatttgtcgattttgattctagaattgattttcacac 36200161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 493 - 551
Target Start/End: Original strand, 37153073 - 37153131
Alignment:
Q  493 aagctataatttgaagcttttgattctagaattgattttaacacttgaatttatcattc 551  Q
    |||||| |||||||||||||||||| || |||||||||||| |||  |||| |||||||    
T  37153073 aagctagaatttgaagcttttgattgtaaaattgattttaagactcaaattcatcattc 37153131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 478 - 536
Target Start/End: Original strand, 38868496 - 38868554
Alignment:
Q  478 aattgattctacttcaagctataatttgaagcttttgattctagaattgattttaacac 536  Q
    |||||||||||||| ||||||  ||||| |||||||| ||||| |||||||||| ||||    
T  38868496 aattgattctacttgaagctaagatttgtagcttttggttctataattgattttcacac 38868554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 476 - 536
Target Start/End: Complemental strand, 26100235 - 26100175
Alignment:
Q  476 agaattgattctacttcaagctataatttgaagcttttgattctagaattgattttaacac 536  Q
    ||||||| ||||| || ||||||  ||||| |||||||||||||| |||||||||| ||||    
T  26100235 agaattggttctatttgaagctaggatttgtagcttttgattctataattgatttttacac 26100175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 480 - 536
Target Start/End: Original strand, 32927892 - 32927948
Alignment:
Q  480 ttgattctacttcaagctataatttgaagcttttgattctagaattgattttaacac 536  Q
    |||||||||||| ||||||  ||||| ||||||||||| ||||||| ||||| ||||    
T  32927892 ttgattctacttgaagctaggatttgtagcttttgattatagaattcatttttacac 32927948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 480 - 536
Target Start/End: Original strand, 35494990 - 35495046
Alignment:
Q  480 ttgattctacttcaagctataatttgaagcttttgattctagaattgattttaacac 536  Q
    |||||||||| | ||||||  ||||| |||||||||||||||||||| |||| ||||    
T  35494990 ttgattctacatgaagctaggatttgtagcttttgattctagaattgttttttacac 35495046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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