View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12658_high_5 (Length: 497)
Name: NF12658_high_5
Description: NF12658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12658_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 475; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 1 - 491
Target Start/End: Complemental strand, 35022798 - 35022308
Alignment:
| Q |
1 |
gttctctacagaagaatacaaactttctgttcctgttggtttcataaaccaatctaattacaaatcttaaaacccaattaactaatcattatcactaaac |
100 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35022798 |
gttctctacagaagaatacaaactttctgtttctgttggtttcataaaccaatctaattacaaatcttaaaacccaattaactaatcattatcactaaac |
35022699 |
T |
|
| Q |
101 |
atcaaaacttaaacaacattaacactaaaacagagctaatcaacaacaaacctgaagaacaatcagcaacaaaatgaaacccacattcaccaatcttttc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35022698 |
atcaaaacttaaacaacattaacactaaaacagagctaatcaacaacaaacctgaagaacaatcagcaacaaaatgaaacccacattcaccaatcttttc |
35022599 |
T |
|
| Q |
201 |
catccagaagagaaatcaatcttatcatactttgtcgaaccagtcggatacaaaatcccccaattccttccatttccagcaccttccttatcaaacaatt |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35022598 |
catccagaagagaaatcaatcttatcatactttgtcgaaccattcggatacaaaatcccccaattccttccatttccagcaccttccttatcaaacaatt |
35022499 |
T |
|
| Q |
301 |
catacagataaacccctttcactccatctttcaacaatggcgttccggcaccggacttcaaatgcttcaccaatcccttcagataaatctctgcataagc |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35022498 |
catacagataaacccctttcactccatctttcaacaatggcgttccggcaccggacttcaaatgcttcaccaatcccttcagataaatctctgcataagc |
35022399 |
T |
|
| Q |
401 |
cgaattcgcatcaagctcacttccagagctaggccaaccggtttccgtaacaatcaccggaatcgtttcgtaaccttccagcgcctttgct |
491 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
35022398 |
cgaattcgcatcaagctcacttccagagctaggccaaccggtttctgtaacaatcaccggaatcgtttcgtaaccttccagcgccattgct |
35022308 |
T |
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