View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12658_high_6 (Length: 480)

Name: NF12658_high_6
Description: NF12658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12658_high_6
NF12658_high_6
[»] chr3 (6 HSPs)
chr3 (86-315)||(23331021-23331243)
chr3 (400-467)||(23330869-23330936)
chr3 (16-59)||(23331336-23331379)
chr3 (88-132)||(13181319-13181363)
chr3 (88-132)||(13958100-13958144)
chr3 (88-132)||(15386594-15386638)
[»] scaffold0027 (2 HSPs)
scaffold0027 (170-305)||(51171-51298)
scaffold0027 (400-436)||(51393-51429)
[»] chr7 (3 HSPs)
chr7 (194-302)||(4007544-4007645)
chr7 (194-302)||(4012936-4013037)
chr7 (230-259)||(32842308-32842337)
[»] chr4 (2 HSPs)
chr4 (183-297)||(17265102-17265208)
chr4 (88-132)||(11474246-11474290)
[»] chr8 (1 HSPs)
chr8 (230-297)||(18451032-18451099)
[»] chr2 (2 HSPs)
chr2 (180-223)||(23855501-23855544)
chr2 (88-132)||(21461078-21461122)


Alignment Details
Target: chr3 (Bit Score: 176; Significance: 1e-94; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 86 - 315
Target Start/End: Complemental strand, 23331243 - 23331021
Alignment:
Q  86 cttaagaagagtagaaagagtttaatttactacctcagtttgtccatattggtttgttaatgactaataaaaattgtgcctgcaaaagcttaagtttgaa 185  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| |||||||||||||||||||||    
T  23331243 cttaagaagagtagaaagagtttaatttactacctcagtttgtccatatcggtttgttaatgacgaataaaaattgtgtctgcaaaagcttaagtttgaa 23331144  T
Q  186 aacctttagaaaatatttttgactattggatttatgctaatgaataatgattcaaatgataagactaaatcaatgtctcaaaatcagaattcaagtatga 285  Q
    |||||||||||||||||||||||||||| ||||||||||       ||||||||||| |||||||||||||||||||||||||||||||||||||||| |    
T  23331143 aacctttagaaaatatttttgactattgaatttatgcta-------atgattcaaatcataagactaaatcaatgtctcaaaatcagaattcaagtataa 23331051  T
Q  286 ataagaaattcaccaatgaaatccgtttat 315  Q
    |||||||||||||||||||| |||||||||    
T  23331050 ataagaaattcaccaatgaattccgtttat 23331021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 400 - 467
Target Start/End: Complemental strand, 23330936 - 23330869
Alignment:
Q  400 gtattagaacacttgatatatgaatgaattctttgaagttaatttccaaggacattgagattgagatt 467  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  23330936 gtattagaacacttgatatatgaatgaattctttgaagttaatttccaaggagattgagattgagatt 23330869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 23331379 - 23331336
Alignment:
Q  16 tgtcattaatcctagaaagtacttgaaaagtccatcttcccaca 59  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  23331379 tgtcattaatcctagaaagtacttgaaaagtccatcttcccaca 23331336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 88 - 132
Target Start/End: Original strand, 13181319 - 13181363
Alignment:
Q  88 taagaagagtagaaagagtttaatttactacctcagtttgtccat 132  Q
    ||||||||||||| ||||||  |||||||||||||||||| ||||    
T  13181319 taagaagagtagagagagttctatttactacctcagtttgaccat 13181363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 88 - 132
Target Start/End: Original strand, 13958100 - 13958144
Alignment:
Q  88 taagaagagtagaaagagtttaatttactacctcagtttgtccat 132  Q
    ||||||||||||||||||||   || |||||||||||||||||||    
T  13958100 taagaagagtagaaagagttctgttcactacctcagtttgtccat 13958144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 88 - 132
Target Start/End: Complemental strand, 15386638 - 15386594
Alignment:
Q  88 taagaagagtagaaagagtttaatttactacctcagtttgtccat 132  Q
    ||||||||||||||||||||   || |||||||||||||||||||    
T  15386638 taagaagagtagaaagagttctgttcactacctcagtttgtccat 15386594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 170 - 305
Target Start/End: Original strand, 51171 - 51298
Alignment:
Q  170 aaagcttaagtttgaaaacctttagaaaatatttttgactattggatttatgctaatgaataatgattcaaatgataagactaaatcaatgtctcaaaat 269  Q
    ||||| ||||||| ||||||||| |||||||||| ||||||||||||||||||||| ||       |||||||||||||||||||||||||| | |||||    
T  51171 aaagcgtaagtttaaaaaccttt-gaaaatatttgtgactattggatttatgctaaaga-------ttcaaatgataagactaaatcaatgtgtgaaaat 51262  T
Q  270 cagaattcaagtatgaataagaaattcaccaatgaa 305  Q
       ||||||| ||||||||||||||| |||||||||    
T  51263 agcaattcaactatgaataagaaatttaccaatgaa 51298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 400 - 436
Target Start/End: Original strand, 51393 - 51429
Alignment:
Q  400 gtattagaacacttgatatatgaatgaattctttgaa 436  Q
    ||||| |||||||||||||||||||||||| ||||||    
T  51393 gtatttgaacacttgatatatgaatgaattatttgaa 51429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 194 - 302
Target Start/End: Complemental strand, 4007645 - 4007544
Alignment:
Q  194 gaaaatatttttgactattggatttatgctaatgaataatgattcaaatgataagactaaatcaatgtctcaaaatcagaattcaagtatgaataagaaa 293  Q
    |||||| ||| ||||||||||||||||||||||||       | ||| |||||| ||||||||||||| | ||||| | ||||||||||||||| |||||    
T  4007645 gaaaatgtttgtgactattggatttatgctaatga-------tccaagtgataaaactaaatcaatgtgtgaaaataataattcaagtatgaattagaaa 4007553  T
Q  294 ttcaccaat 302  Q
    |||| ||||    
T  4007552 ttcagcaat 4007544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 194 - 302
Target Start/End: Complemental strand, 4013037 - 4012936
Alignment:
Q  194 gaaaatatttttgactattggatttatgctaatgaataatgattcaaatgataagactaaatcaatgtctcaaaatcagaattcaagtatgaataagaaa 293  Q
    |||||| ||| ||||||||||||||||||||||||       | ||| |||||| ||||||||||||| | ||||| | ||||||||||||||| |||||    
T  4013037 gaaaatgtttgtgactattggatttatgctaatga-------tccaagtgataaaactaaatcaatgtgtgaaaataataattcaagtatgaattagaaa 4012945  T
Q  294 ttcaccaat 302  Q
    |||| ||||    
T  4012944 ttcagcaat 4012936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 230 - 259
Target Start/End: Original strand, 32842308 - 32842337
Alignment:
Q  230 taatgattcaaatgataagactaaatcaat 259  Q
    ||||||||||||||||||||||||||||||    
T  32842308 taatgattcaaatgataagactaaatcaat 32842337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 183 - 297
Target Start/End: Original strand, 17265102 - 17265208
Alignment:
Q  183 gaaaacctttagaaaatatttttgactattggatttatgctaatgaataatgattcaaatgataagactaaatcaatgtctcaaaatcagaattcaagta 282  Q
    |||||||||| |||||||||| | |||||| |||||||||||| ||       |||||||||||||||||||| ||||| | ||||| | ||||||| ||    
T  17265102 gaaaaccttt-gaaaatatttgttactattagatttatgctaacga-------ttcaaatgataagactaaattaatgtgtaaaaataacaattcaacta 17265193  T
Q  283 tgaataagaaattca 297  Q
    |||||||||| ||||    
T  17265194 tgaataagaagttca 17265208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 88 - 132
Target Start/End: Complemental strand, 11474290 - 11474246
Alignment:
Q  88 taagaagagtagaaagagtttaatttactacctcagtttgtccat 132  Q
    ||||||||||||| ||||||  |||||||||||||||||| ||||    
T  11474290 taagaagagtagagagagttctatttactacctcagtttgaccat 11474246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 230 - 297
Target Start/End: Complemental strand, 18451099 - 18451032
Alignment:
Q  230 taatgattcaaatgataagactaaatcaatgtctcaaaatcagaattcaagtatgaataagaaattca 297  Q
    ||||| ||||||||||| |||||||||||||| | ||||  | || |||| |||||||||||||||||    
T  18451099 taatggttcaaatgataggactaaatcaatgtgtaaaaacaacaactcaactatgaataagaaattca 18451032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 180 - 223
Target Start/End: Complemental strand, 23855544 - 23855501
Alignment:
Q  180 tttgaaaacctttagaaaatatttttgactattggatttatgct 223  Q
    |||||||| ||||||||||||| | |||||||||||||||||||    
T  23855544 tttgaaaaactttagaaaatatgtatgactattggatttatgct 23855501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 88 - 132
Target Start/End: Original strand, 21461078 - 21461122
Alignment:
Q  88 taagaagagtagaaagagtttaatttactacctcagtttgtccat 132  Q
    ||||||||||||| ||||||  |||||||||||||||||| ||||    
T  21461078 taagaagagtagagagagttctatttactacctcagtttgaccat 21461122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University