View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12658_high_7 (Length: 469)
Name: NF12658_high_7
Description: NF12658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12658_high_7 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 317; Significance: 1e-179; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 80 - 458
Target Start/End: Complemental strand, 48947157 - 48946779
Alignment:
| Q |
80 |
agattgtgcagtttgtattttgcttaataattgaactgtgttttacttgttgttcaatcagttattgaatagaaaacaaatttatactgatgattcaaaa |
179 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
48947157 |
agattgtgcagtttgtattttgcttaataattgaactgtgttttacttgttgttcaattagttattgaatagaaaacaaatgtatactgatgattcaaaa |
48947058 |
T |
|
| Q |
180 |
tgctaaaggaagaaaaggcatgaacaaaaaccaggtattttgacaacacttttcagtgggaatattgagattatgttacatttatgttagttatgtgatg |
279 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48947057 |
tgctaaaggaagaaaaggcatgaacaaaaaccaggt-ttttgacaacacttttcagtgggaatattgagattatgttacatttatgttagttatgtgatg |
48946959 |
T |
|
| Q |
280 |
tgagtaacttttatatatgcacatacatagtaccttcgctagtttccttgtggcatgtggtgtgttacttggtagtaatttgaaaagatgtctttgcttt |
379 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48946958 |
tgagtaacttttatatatg------tatagtaccttcgctagtttccttgtggcatgtggtgtgttacttggtagtaatttgaaaagatgtctttgcttt |
48946865 |
T |
|
| Q |
380 |
gaatttgttaccacatatctaaacatgtggaattcatcaaa-------ggtcatgtattagcacttctttatattgcccttttcat |
458 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48946864 |
gaatttgttaccacatatctaaacatgtggaattcatcaaagtttaatggtcatgtattagcacttctttatattgcccttttcat |
48946779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 19 - 76
Target Start/End: Complemental strand, 48947263 - 48947206
Alignment:
| Q |
19 |
agggaatgtatcaaataacagcggcacagaatgtaggattcatcctaaataaggactg |
76 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48947263 |
agggaatgtatcaaataacagcggcacagaatgtaggattcatcctaaataaggactg |
48947206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University