View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12658_low_1 (Length: 642)
Name: NF12658_low_1
Description: NF12658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12658_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 523; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 523; E-Value: 0
Query Start/End: Original strand, 16 - 628
Target Start/End: Original strand, 4324051 - 4324665
Alignment:
| Q |
16 |
caaaatggagcatgcaatcatgtttgttaagttgtttaattgtacaatagttacttcaggnnnnnnnnnnnngttt--aaaaatatgtcatctaagtctt |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| |
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| T |
4324051 |
caaaatggagcatgcaatcatgtttgttaagttgtttaattgtacaatagttacttcaggttttttttttttttttttaaaaatatgtcatctaagtctt |
4324150 |
T |
|
| Q |
114 |
attatgtacatatatatacacaattaccatttttcatacattttgttacaaaaatgcatataggtgtacgttacgttgattattatgttactagcgtggt |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
4324151 |
attatgtacatatatatacacaattaccatttttcatacattttgttacaaaaatgcatataggtgtacgttacgttgattattatgttactggcgtggt |
4324250 |
T |
|
| Q |
214 |
ataaactgagtttgtaacttattctttgtatacttcttagttctttctcatctcttatgggttcctaatattcattttagaacgatttgagacaaatatt |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4324251 |
ataaactgagtttgtaacttattctttgtatacttcttagttctttctcatctcttatgggttcctaatattcattttagaacgatttgagacaaatatt |
4324350 |
T |
|
| Q |
314 |
ttgtataagagaattgtgtgttacagagtgtattgttagcataannnnnnncaataataagaagttgtagtctatccacatttgtaaattttaaataaat |
413 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4324351 |
ttgtataagagaattgtgtgttacggagtgtattgttagcataatttttttcaataataagaagttgtagtctatccacatttgtaaattttaaataaat |
4324450 |
T |
|
| Q |
414 |
ttgaaactcagggaatggttttgatgtgcagatcttatccggctctttgcagttgcacttaagtatcattcaaaccaaaatcgcatctgctctttatcaa |
513 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
4324451 |
ttgaaactcagggaatggttttgatgtgcagatcttatccggctctttgcagttgcacttaagtatcattcaaaccaaaatcacatctgctctttatcaa |
4324550 |
T |
|
| Q |
514 |
accattcaaacttccatcgttgttctattcttcgtacttcaagttctcatggttaattttctatctttatgttttcatatatttcaatcccttgggtttt |
613 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4324551 |
accattcaaacttccatcgttgttttattcttcgtacttcaagttctcatggttgattttctatctttatgttttcatatatttcaatcccttgggtttt |
4324650 |
T |
|
| Q |
614 |
ccgatatgctctctg |
628 |
Q |
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||||||||||||||| |
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| T |
4324651 |
ccgatatgctctctg |
4324665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 79; Significance: 1e-36; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 381 - 562
Target Start/End: Complemental strand, 211150 - 210970
Alignment:
| Q |
381 |
tagtctatccacatttgtaaattttaaataaatttgaaactcagggaatggtttt--gatgtgcagatcttatccggctctttgcagttgcacttaagta |
478 |
Q |
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||||||||||||||||||||||||||| |||||||||||||| ||||| |||||| |||||||| |||||||||||||||||| ||||||| | | | |
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| T |
211150 |
tagtctatccacatttgtaaattttaattaaatttgaaactcggggaagggttttgagatgtgcatatcttatccggctctttgtagttgcagtaa---a |
211054 |
T |
|
| Q |
479 |
tcattcaaaccaaaatcgcatctgctctttatcaaaccattcaaacttccatcgttgttctattcttcgtacttcaagttctca |
562 |
Q |
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| T |
211053 |
ttattcaaaccattgtcgcttccgctctttgtcaaacaattcaaactctcattgttgttctattcttcatgcttcaagttctca |
210970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 377 - 428
Target Start/End: Complemental strand, 7842513 - 7842462
Alignment:
| Q |
377 |
gttgtagtctatccacatttgtaaattttaaataaatttgaaactcagggaa |
428 |
Q |
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|||||| |||||| |||||||| ||||||||||||||||||||||| ||||| |
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| T |
7842513 |
gttgtaatctatctacatttgtgaattttaaataaatttgaaactctgggaa |
7842462 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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