View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12658_low_10 (Length: 430)

Name: NF12658_low_10
Description: NF12658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12658_low_10
NF12658_low_10
[»] chr2 (3 HSPs)
chr2 (236-422)||(15344342-15344528)
chr2 (15-159)||(15344121-15344265)
chr2 (340-415)||(25967030-25967105)
[»] chr4 (2 HSPs)
chr4 (247-422)||(13993134-13993306)
chr4 (98-139)||(13992990-13993031)
[»] chr3 (3 HSPs)
chr3 (32-145)||(11436162-11436275)
chr3 (236-307)||(11436356-11436427)
chr3 (340-399)||(7959142-7959201)
[»] scaffold0009 (1 HSPs)
scaffold0009 (345-417)||(99963-100035)
[»] chr5 (1 HSPs)
chr5 (84-146)||(5729600-5729662)
[»] chr7 (1 HSPs)
chr7 (254-308)||(26629965-26630018)
[»] chr1 (1 HSPs)
chr1 (250-307)||(14912793-14912849)


Alignment Details
Target: chr2 (Bit Score: 167; Significance: 3e-89; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 236 - 422
Target Start/End: Original strand, 15344342 - 15344528
Alignment:
Q  236 actttttatgctgttttgtaacaattggataatttccgttttaaatttaatgatgtgaaaattgtgttgtgttgtttcttctcgtttatatcgcttatat 335  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||    
T  15344342 actttttatgttgttttgtaacaattggataatttccgttttaaatttaatgttgtgaaaattgtgttgtgttgtttcttctcttttatatcgcttatat 15344441  T
Q  336 cacgaatgcatgtttatgttgtttagaagcaattttaagtgtcaaatgcatgtttcagccaaaatagaccatgtctgtctctctgct 422  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||    
T  15344442 cacgaatgcatgtttatgttgtttagaagcaattttaagtgtcaaatgcatgtttcagccaaaatagaccatatctgtctctgtgct 15344528  T

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Target: chr2; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 15 - 159
Target Start/End: Original strand, 15344121 - 15344265
Alignment:
Q  15 agagatcatgtctatgttgtcatgtccagtgatgtggtgccgtaagggcctcctgcatgggttcattcagaaggaatattgggagaggttcatggagtgc 114  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| ||    
T  15344121 agagatcatgtctatgttgtcatgtccagtggtgtggtgccgtaagggcctcctgcatgggttcattcggaaggaatcttgggagaggttcatggagggc 15344220  T
Q  115 gagtttatcgtcgtaggcgtgatgtttagggtgacaggagtggca 159  Q
    |||||||||||||||||||||||||||||||||||||| ||||||    
T  15344221 gagtttatcgtcgtaggcgtgatgtttagggtgacaggggtggca 15344265  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 340 - 415
Target Start/End: Original strand, 25967030 - 25967105
Alignment:
Q  340 aatgcatgtttatgttgtttagaagcaattttaagtgtcaaatgcatgtttcagccaaaatagaccatgtctgtct 415  Q
    ||||||||||||| | |||||||| | |||| ||||||| ||||||||| |||| ||||| ||||| |||||||||    
T  25967030 aatgcatgtttatatcgtttagaaccgatttaaagtgtctaatgcatgtgtcagtcaaaacagaccttgtctgtct 25967105  T

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Target: chr4 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 247 - 422
Target Start/End: Original strand, 13993134 - 13993306
Alignment:
Q  247 tgttttgtaacaattggataatttccgttttaaatttaatgatgtgaaaattgtgttgtgttgtttcttctcgtttatatc--gcttatatcacgaatgc 344  Q
    |||||||||||||||||||||||||| |||||||||||||| |  ||||     ||||||||||||||| |||||||||||  | |||||| || |||||    
T  13993134 tgttttgtaacaattggataatttccattttaaatttaatgttccgaaa-----gttgtgttgtttcttatcgtttatatcatgtttatataacaaatgc 13993228  T
Q  345 atgtttatgttgtttagaagcaattttaagtgtcaaatgcatgtttcagccaaaatagaccatgtctgtctctctgct 422  Q
    || ||||| | ||||||||||||||||| ||||||||||||||| | |||||||| ||||||||| ||| ||| ||||    
T  13993229 atatttatatcgtttagaagcaattttaggtgtcaaatgcatgtcttagccaaaacagaccatgtttgtttctgtgct 13993306  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 98 - 139
Target Start/End: Original strand, 13992990 - 13993031
Alignment:
Q  98 agaggttcatggagtgcgagtttatcgtcgtaggcgtgatgt 139  Q
    |||||||||||||  ||| |||||||||||||||||||||||    
T  13992990 agaggttcatggatggcgggtttatcgtcgtaggcgtgatgt 13993031  T

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Target: chr3 (Bit Score: 58; Significance: 3e-24; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 32 - 145
Target Start/End: Original strand, 11436162 - 11436275
Alignment:
Q  32 tgtcatgtccagtgatgtggtgccgtaagggcctcctgcatgggttcattcagaaggaatattgggagaggttcatggagtgcgagtttatcgtcgtagg 131  Q
    |||| ||||||||| ||||||| || ||||| || |||||||||||||||  ||||||||   ||||||||||||||||| ||| |||||||||||||||    
T  11436162 tgtcgtgtccagtggtgtggtggcgcaagggtcttctgcatgggttcatttggaaggaatcaagggagaggttcatggagggcgggtttatcgtcgtagg 11436261  T
Q  132 cgtgatgtttaggg 145  Q
    ||||||||| ||||    
T  11436262 cgtgatgttaaggg 11436275  T

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Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 236 - 307
Target Start/End: Original strand, 11436356 - 11436427
Alignment:
Q  236 actttttatgctgttttgtaacaattggataatttccgttttaaatttaatgatgtgaaaattgtgttgtgt 307  Q
    |||||||||| ||||||||||||||| |||||||||||||||||| |||||| ||||||||||| |||||||    
T  11436356 actttttatgttgttttgtaacaatttgataatttccgttttaaacttaatgttgtgaaaattgggttgtgt 11436427  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 340 - 399
Target Start/End: Original strand, 7959142 - 7959201
Alignment:
Q  340 aatgcatgtttatgttgtttagaagcaattttaagtgtcaaatgcatgtttcagccaaaa 399  Q
    |||||||| |||||| ||||||||||||| | | | | ||||||||||||||||||||||    
T  7959142 aatgcatggttatgtcgtttagaagcaatctaatgcgacaaatgcatgtttcagccaaaa 7959201  T

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Target: scaffold0009 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 345 - 417
Target Start/End: Original strand, 99963 - 100035
Alignment:
Q  345 atgtttatgttgtttagaagcaattttaagtgtcaaatgcatgtttcagccaaaatagaccatgtctgtctct 417  Q
    |||||||||| ||||| ||||||||| ||||||||||||||||||||| |||||| ||||  |||||||||||    
T  99963 atgtttatgtagtttataagcaatttaaagtgtcaaatgcatgtttcaaccaaaacagacattgtctgtctct 100035  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 84 - 146
Target Start/End: Original strand, 5729600 - 5729662
Alignment:
Q  84 gaaggaatattgggagaggttcatggagtgcgagtttatcgtcgtaggcgtgatgtttagggt 146  Q
    |||||||| ||||||||||| ||||||| | | |||||||||||||||||||||||| |||||    
T  5729600 gaaggaatcttgggagaggtccatggagggagggtttatcgtcgtaggcgtgatgttcagggt 5729662  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 254 - 308
Target Start/End: Complemental strand, 26630018 - 26629965
Alignment:
Q  254 taacaattggataatttccgttttaaatttaatgatgtgaaaattgtgttgtgtt 308  Q
    ||||| |||||||||||| ||||| ||||||||| | ||||||||||||||||||    
T  26630018 taacatttggataatttctgtttttaatttaatg-tttgaaaattgtgttgtgtt 26629965  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 250 - 307
Target Start/End: Original strand, 14912793 - 14912849
Alignment:
Q  250 tttgtaacaattggataatttccgttttaaatttaatgatgtgaaaattgtgttgtgt 307  Q
    ||||||||| |||||||||||  ||||| ||||||||| | |||||||||||||||||    
T  14912793 tttgtaacatttggataatttgtgtttttaatttaatg-tttgaaaattgtgttgtgt 14912849  T

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