View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12658_low_11 (Length: 413)
Name: NF12658_low_11
Description: NF12658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12658_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 1 - 338
Target Start/End: Original strand, 71285 - 71622
Alignment:
| Q |
1 |
gttgtcaacatcttcgttgacaacgatatcaacatcaacaagttggttaatgaagacaactaaaactctgtcttcatcagcagacttgtcagccacttct |
100 |
Q |
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| T |
71285 |
gttgtcaacatcttcgttgacaacgatgtcaacatcaacaagtctgttaatgaagacaacaaaaactctgtcttcatcagcagacttgtcagctacttct |
71384 |
T |
|
| Q |
101 |
gaagaacttagtgagattattgagctaccaactttggaaaacggttatgatgatgttgggaaagaggaatttgtctatgttgactcacaagcacaagact |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
71385 |
gaagaacttagtgagattattgagctaccaactttggaaaacggttatgatgatgttgggaaagaggaatttgtctatgttgactcacaagcacaagact |
71484 |
T |
|
| Q |
201 |
atgcttggatgatgtatcagcaaccaatgacatggctacaaacaacacaagaagaagatggttgttgtgttggtgatgatggacttgttaataatggtgt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
71485 |
atgcttggatgatgtatcagcaaccaatgacatggctacaaacaacacaagaagaagatggttgttgtgttggtgatgatggacttgttaataatggtgt |
71584 |
T |
|
| Q |
301 |
tgtaactagtttcgagagttttatgtggaattactagg |
338 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
71585 |
tgtaactagtttcgagagttttatgtggaattactagg |
71622 |
T |
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