View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12658_low_18 (Length: 305)
Name: NF12658_low_18
Description: NF12658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12658_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 18 - 294
Target Start/End: Complemental strand, 30791422 - 30791146
Alignment:
| Q |
18 |
attggaagcaataacatgagttactatttactatggatgttaaaatctacatttatatttgtttccatttctcaattaattacaaattatttcttaattt |
117 |
Q |
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| T |
30791422 |
attggaagcaataacatgagttactatttactatggatgttaaaatctacatttatatttgtttccatttctcaattaattacaaattatttcttaattt |
30791323 |
T |
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| Q |
118 |
aactaatcaattggtccatggtcattggaaggcctatgaggaggcacattcatgtcagccatgtgtgttttcccttcatatggagttctttgaaatatct |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
30791322 |
aactaatcaattggtccatggtcattggaaggcctatgaggaggcacattcatgtcagccatgtgtgttttcccttcacatggagttctttgaaatatct |
30791223 |
T |
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| Q |
218 |
tttcttttcttatggaatagtttttaactgattggctaaatctatctttgtatttacggcagattcaatattttcat |
294 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30791222 |
tttcttttcttatggaatagtttttaactgattggctaaatctatctttgtatttacggcagattcaatattttcat |
30791146 |
T |
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