View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12658_low_2 (Length: 635)

Name: NF12658_low_2
Description: NF12658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12658_low_2
NF12658_low_2
[»] chr8 (29 HSPs)
chr8 (571-630)||(35441058-35441117)
chr8 (571-629)||(5033152-5033210)
chr8 (571-629)||(2581816-2581874)
chr8 (571-629)||(8243477-8243535)
chr8 (571-629)||(22649836-22649894)
chr8 (571-629)||(33841680-33841738)
chr8 (572-629)||(5667187-5667244)
chr8 (572-623)||(5033251-5033302)
chr8 (572-630)||(10086747-10086805)
chr8 (575-623)||(33841588-33841636)
chr8 (572-623)||(5667094-5667145)
chr8 (572-623)||(35440966-35441017)
chr8 (295-357)||(7166969-7167031)
chr8 (572-616)||(10086847-10086891)
chr8 (572-623)||(8796419-8796470)
chr8 (572-627)||(45191217-45191272)
chr8 (480-534)||(14949905-14949959)
chr8 (572-623)||(1880236-1880286)
chr8 (146-236)||(7167095-7167185)
chr8 (87-129)||(13785154-13785196)
chr8 (493-547)||(25869256-25869310)
chr8 (573-623)||(39851046-39851096)
chr8 (164-253)||(3288857-3288946)
chr8 (20-133)||(3288995-3289108)
chr8 (574-623)||(4958690-4958739)
chr8 (572-617)||(8796512-8796557)
chr8 (572-621)||(43844559-43844608)
chr8 (173-225)||(3410820-3410872)
chr8 (571-623)||(45191124-45191176)
[»] chr4 (28 HSPs)
chr4 (571-630)||(51265435-51265494)
chr4 (572-623)||(30709990-30710041)
chr4 (571-629)||(6271693-6271751)
chr4 (571-629)||(23444358-23444416)
chr4 (572-623)||(35682163-35682214)
chr4 (571-628)||(30861863-30861920)
chr4 (571-623)||(3862635-3862687)
chr4 (571-623)||(3871392-3871444)
chr4 (572-621)||(47661932-47661981)
chr4 (572-623)||(6271792-6271843)
chr4 (572-623)||(42375100-42375151)
chr4 (573-623)||(26186105-26186155)
chr4 (572-621)||(23444268-23444317)
chr4 (572-617)||(35682256-35682301)
chr4 (433-568)||(2996578-2996711)
chr4 (567-602)||(30861800-30861835)
chr4 (572-623)||(51265535-51265586)
chr4 (592-629)||(42375010-42375047)
chr4 (572-621)||(44380020-44380069)
chr4 (592-629)||(47404686-47404723)
chr4 (572-617)||(53954700-53954745)
chr4 (593-629)||(31430560-31430596)
chr4 (571-603)||(47661859-47661891)
chr4 (572-623)||(2325070-2325121)
chr4 (572-623)||(5048890-5048941)
chr4 (476-545)||(6978935-6979004)
chr4 (579-623)||(44379927-44379971)
chr4 (567-603)||(50384182-50384218)
[»] chr7 (19 HSPs)
chr7 (571-629)||(11016860-11016918)
chr7 (572-628)||(45231940-45231996)
chr7 (571-629)||(34854784-34854842)
chr7 (571-629)||(41018317-41018375)
chr7 (571-629)||(38975796-38975854)
chr7 (572-623)||(4290635-4290686)
chr7 (572-623)||(11016959-11017010)
chr7 (572-623)||(42628385-42628436)
chr7 (571-629)||(48000685-48000743)
chr7 (571-628)||(4290537-4290594)
chr7 (571-623)||(48000826-48000878)
chr7 (573-629)||(15027533-15027589)
chr7 (585-623)||(38975908-38975946)
chr7 (593-629)||(29053416-29053452)
chr7 (572-623)||(27028725-27028776)
chr7 (433-543)||(33894657-33894765)
chr7 (476-567)||(48157093-48157184)
chr7 (473-534)||(3500937-3500998)
chr7 (516-568)||(39505961-39506013)
[»] chr5 (29 HSPs)
chr5 (571-629)||(19655149-19655207)
chr5 (571-629)||(291088-291146)
chr5 (572-623)||(2953280-2953331)
chr5 (573-629)||(19598323-19598379)
chr5 (572-623)||(16971234-16971285)
chr5 (572-623)||(29699457-29699508)
chr5 (572-623)||(3899929-3899980)
chr5 (572-623)||(19655248-19655299)
chr5 (575-623)||(2356364-2356412)
chr5 (572-623)||(291187-291238)
chr5 (572-623)||(2093934-2093985)
chr5 (572-623)||(12913800-12913851)
chr5 (572-623)||(13312261-13312312)
chr5 (572-626)||(12913893-12913947)
chr5 (592-629)||(2953198-2953235)
chr5 (593-630)||(3899838-3899875)
chr5 (572-621)||(30117827-30117876)
chr5 (571-603)||(29699384-29699416)
chr5 (585-621)||(39777050-39777086)
chr5 (473-568)||(10272401-10272496)
chr5 (572-623)||(29385395-29385446)
chr5 (571-629)||(30117917-30117975)
chr5 (476-534)||(32172692-32172750)
chr5 (573-623)||(32485640-32485690)
chr5 (454-534)||(10907417-10907495)
chr5 (572-621)||(28819007-28819056)
chr5 (571-623)||(3180149-3180200)
chr5 (593-629)||(16971144-16971180)
chr5 (573-621)||(22082997-22083045)
[»] chr3 (21 HSPs)
chr3 (571-629)||(41752955-41753013)
chr3 (572-623)||(30734492-30734543)
chr3 (571-629)||(51046162-51046220)
chr3 (571-623)||(1801443-1801495)
chr3 (571-629)||(43139798-43139856)
chr3 (571-623)||(41753053-41753105)
chr3 (572-629)||(47492137-47492194)
chr3 (573-623)||(55223229-55223279)
chr3 (572-623)||(45103106-45103157)
chr3 (593-629)||(1801597-1801633)
chr3 (572-623)||(18321648-18321699)
chr3 (572-623)||(30734399-30734450)
chr3 (572-623)||(33689173-33689224)
chr3 (572-603)||(47492064-47492095)
chr3 (572-623)||(50524792-50524843)
chr3 (572-614)||(39057047-39057089)
chr3 (573-623)||(39429996-39430046)
chr3 (433-545)||(49465869-49465978)
chr3 (590-623)||(1272557-1272590)
chr3 (473-546)||(36646352-36646425)
chr3 (572-616)||(30580846-30580890)
[»] chr1 (38 HSPs)
chr1 (571-629)||(29179686-29179744)
chr1 (571-629)||(46931988-46932046)
chr1 (572-629)||(37155037-37155094)
chr1 (571-629)||(44706873-44706931)
chr1 (571-629)||(48994006-48994064)
chr1 (571-629)||(5995360-5995418)
chr1 (572-623)||(48993914-48993965)
chr1 (571-623)||(5995458-5995510)
chr1 (573-621)||(15220902-15220950)
chr1 (572-624)||(36290497-36290549)
chr1 (571-623)||(46932071-46932122)
chr1 (577-629)||(48498406-48498458)
chr1 (460-543)||(3597240-3597321)
chr1 (420-547)||(10439712-10439837)
chr1 (572-623)||(1091634-1091685)
chr1 (572-623)||(9157307-9157358)
chr1 (572-623)||(17127561-17127612)
chr1 (572-623)||(17127654-17127705)
chr1 (572-623)||(21630039-21630090)
chr1 (572-623)||(29179594-29179645)
chr1 (572-623)||(29371458-29371509)
chr1 (572-623)||(31342260-31342311)
chr1 (572-623)||(32540838-32540889)
chr1 (572-623)||(49444910-49444961)
chr1 (572-621)||(28395636-28395685)
chr1 (572-613)||(32540755-32540796)
chr1 (593-629)||(49445013-49445049)
chr1 (594-629)||(8337954-8337989)
chr1 (572-623)||(12441045-12441096)
chr1 (433-547)||(31517672-31517784)
chr1 (572-623)||(33219663-33219714)
chr1 (572-623)||(36381589-36381640)
chr1 (473-534)||(6262777-6262838)
chr1 (428-564)||(10199335-10199469)
chr1 (594-623)||(44183438-44183467)
chr1 (593-621)||(29371376-29371404)
chr1 (593-629)||(34062209-34062245)
chr1 (594-630)||(46334049-46334085)
[»] chr2 (26 HSPs)
chr2 (571-629)||(16514415-16514473)
chr2 (571-629)||(29508780-29508838)
chr2 (571-622)||(6217222-6217273)
chr2 (571-629)||(9173070-9173128)
chr2 (572-623)||(14470589-14470640)
chr2 (572-623)||(16514514-16514565)
chr2 (572-623)||(32545878-32545929)
chr2 (586-629)||(37632982-37633025)
chr2 (572-623)||(38933677-38933728)
chr2 (572-618)||(14229355-14229401)
chr2 (574-623)||(29508687-29508736)
chr2 (572-623)||(6722041-6722092)
chr2 (584-623)||(32545783-32545822)
chr2 (572-621)||(14892350-14892399)
chr2 (574-623)||(45213892-45213941)
chr2 (593-629)||(6217326-6217362)
chr2 (572-616)||(33018635-33018679)
chr2 (571-623)||(37961795-37961847)
chr2 (594-629)||(1992236-1992271)
chr2 (572-623)||(39819060-39819111)
chr2 (592-626)||(9172984-9173018)
chr2 (295-357)||(14770331-14770393)
chr2 (473-545)||(1742002-1742074)
chr2 (571-603)||(15011297-15011329)
chr2 (593-629)||(29925672-29925708)
chr2 (580-624)||(30610274-30610317)
[»] scaffold0161 (2 HSPs)
scaffold0161 (571-629)||(27309-27367)
scaffold0161 (572-623)||(27217-27268)
[»] chr6 (13 HSPs)
chr6 (571-629)||(24975743-24975801)
chr6 (571-629)||(551254-551312)
chr6 (572-623)||(24587458-24587509)
chr6 (572-623)||(24618598-24618649)
chr6 (572-614)||(12343190-12343232)
chr6 (573-621)||(13043548-13043596)
chr6 (572-623)||(17750900-17750950)
chr6 (572-623)||(17750992-17751043)
chr6 (497-567)||(9667979-9668049)
chr6 (595-629)||(12343100-12343134)
chr6 (583-629)||(13043439-13043485)
chr6 (476-534)||(32577959-32578017)
chr6 (458-546)||(34538175-34538261)
[»] scaffold0586 (2 HSPs)
scaffold0586 (572-623)||(7137-7187)
scaffold0586 (572-617)||(7050-7095)
[»] scaffold0016 (2 HSPs)
scaffold0016 (572-623)||(49700-49751)
scaffold0016 (593-629)||(49805-49841)
[»] scaffold0047 (1 HSPs)
scaffold0047 (593-628)||(63758-63793)
[»] scaffold0481 (1 HSPs)
scaffold0481 (580-621)||(2974-3015)
[»] scaffold0468 (1 HSPs)
scaffold0468 (93-133)||(8974-9014)


Alignment Details
Target: chr8 (Bit Score: 56; Significance: 7e-23; HSPs: 29)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 571 - 630
Target Start/End: Original strand, 35441058 - 35441117
Alignment:
Q  571 gcattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagtattttct 630  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  35441058 gcattgtgattggccaatgtcaccaatgtcacccaactctatgtcacccaagtattttct 35441117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 571 - 629
Target Start/End: Complemental strand, 5033210 - 5033152
Alignment:
Q  571 gcattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagtattttc 629  Q
    ||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||    
T  5033210 gcattgtgattggtcaatgtcaccaatgtcacccaactctatgtcacccaagtattttc 5033152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 571 - 629
Target Start/End: Complemental strand, 2581874 - 2581816
Alignment:
Q  571 gcattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagtattttc 629  Q
    |||||||||||||||||||||| |||||||||| || ||||||||||||||||||||||    
T  2581874 gcattgtgattggccaatgtcaacaatgtcacccaattctatgtcacccaagtattttc 2581816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 571 - 629
Target Start/End: Original strand, 8243477 - 8243535
Alignment:
Q  571 gcattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagtattttc 629  Q
    |||||||||||| |||| ||||||||||||||| |||||||||||||||||||||||||    
T  8243477 gcattgtgattgaccaacgtcaccaatgtcacccaactctatgtcacccaagtattttc 8243535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 571 - 629
Target Start/End: Complemental strand, 22649894 - 22649836
Alignment:
Q  571 gcattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagtattttc 629  Q
    ||||||||||| ||||||||||||||||||||  |||||||||||||||||||||||||    
T  22649894 gcattgtgattagccaatgtcaccaatgtcactcaactctatgtcacccaagtattttc 22649836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 571 - 629
Target Start/End: Original strand, 33841680 - 33841738
Alignment:
Q  571 gcattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagtattttc 629  Q
    ||||| ||||||| ||||||||||||||||||| |||||||||||||||||||||||||    
T  33841680 gcattctgattggtcaatgtcaccaatgtcacccaactctatgtcacccaagtattttc 33841738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 572 - 629
Target Start/End: Original strand, 5667187 - 5667244
Alignment:
Q  572 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagtattttc 629  Q
    |||||| ||||||||||||||||||||||| | |||||||||||||||||||||||||    
T  5667187 cattgtaattggccaatgtcaccaatgtcatcaaactctatgtcacccaagtattttc 5667244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 572 - 623
Target Start/End: Original strand, 5033251 - 5033302
Alignment:
Q  572 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagt 623  Q
    |||||||||||| ||||||||||||||||||| |||||||||||||||||||    
T  5033251 cattgtgattggtcaatgtcaccaatgtcacccaactctatgtcacccaagt 5033302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 572 - 630
Target Start/End: Complemental strand, 10086805 - 10086747
Alignment:
Q  572 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagtattttct 630  Q
    ||||||||||| |||||||||| ||||||||| || |||||||||||||||||||||||    
T  10086805 cattgtgattgaccaatgtcactaatgtcacccaattctatgtcacccaagtattttct 10086747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 575 - 623
Target Start/End: Complemental strand, 33841636 - 33841588
Alignment:
Q  575 tgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagt 623  Q
    ||||||||| ||||||||||||||||||| |||||||||||||||||||    
T  33841636 tgtgattggtcaatgtcaccaatgtcacccaactctatgtcacccaagt 33841588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 572 - 623
Target Start/End: Complemental strand, 5667145 - 5667094
Alignment:
Q  572 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagt 623  Q
    ||||||||||| |||||||||||||||||| | |||||||||||||||||||    
T  5667145 cattgtgattgaccaatgtcaccaatgtcatccaactctatgtcacccaagt 5667094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 572 - 623
Target Start/End: Complemental strand, 35441017 - 35440966
Alignment:
Q  572 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagt 623  Q
    |||||||||||| ||||||||||||||||||| ||||||| |||||||||||    
T  35441017 cattgtgattggtcaatgtcaccaatgtcacccaactctaagtcacccaagt 35440966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 295 - 357
Target Start/End: Complemental strand, 7167031 - 7166969
Alignment:
Q  295 gtggaggagtgcacttactcgagctgctgatttctctggttgggatgtccccaattgcaggta 357  Q
    ||||| ||||||||| |||| ||||||| |||| ||||||||||||||| |||||||||||||    
T  7167031 gtggacgagtgcactcactcaagctgctaatttgtctggttgggatgtcaccaattgcaggta 7166969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 572 - 616
Target Start/End: Original strand, 10086847 - 10086891
Alignment:
Q  572 cattgtgattggccaatgtcaccaatgtcacctaactctatgtca 616  Q
    |||||||||||| ||||||||||||||||||| ||||||||||||    
T  10086847 cattgtgattggtcaatgtcaccaatgtcacccaactctatgtca 10086891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 572 - 623
Target Start/End: Complemental strand, 8796470 - 8796419
Alignment:
Q  572 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagt 623  Q
    ||||||||||| ||||| |||| ||| |||||||||||||||||||||||||    
T  8796470 cattgtgattgaccaatatcacaaatatcacctaactctatgtcacccaagt 8796419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 572 - 627
Target Start/End: Original strand, 45191217 - 45191272
Alignment:
Q  572 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagtattt 627  Q
    |||| ||||||| ||||||||||||| ||| | |||||||||||||||||||||||    
T  45191217 cattttgattggtcaatgtcaccaatatcatccaactctatgtcacccaagtattt 45191272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 480 - 534
Target Start/End: Complemental strand, 14949959 - 14949905
Alignment:
Q  480 ggagagctgattaaaataacttatgtcatgtccatgagctattttcagcttattt 534  Q
    |||||||| || ||||||||||||| ||||||||| |||| ||||||||||||||    
T  14949959 ggagagcttatgaaaataacttatgacatgtccataagctgttttcagcttattt 14949905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 572 - 623
Target Start/End: Complemental strand, 1880286 - 1880236
Alignment:
Q  572 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagt 623  Q
    |||||||||||| ||||||||||| ||||||| || ||||||||||||||||    
T  1880286 cattgtgattggtcaatgtcaccagtgtcacc-aattctatgtcacccaagt 1880236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 146 - 236
Target Start/End: Complemental strand, 7167185 - 7167095
Alignment:
Q  146 agaactcatgcccaggttgttgtccctgtgttttatgatgtcgacccttctgttgttcgacaccagaagggtgattttggagatattttga 236  Q
    |||||||||| |||||||||||||||| | ||||| || || || || || ||||| || || |||||||||| ||| ||||| |||||||    
T  7167185 agaactcatggccaggttgttgtccctatattttacgacgttgatccatcagttgtgcgccaacagaagggtgctttcggagaaattttga 7167095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 87 - 129
Target Start/End: Original strand, 13785154 - 13785196
Alignment:
Q  87 ctatccttgttttctcaaaaaactatactcaatctagttggtg 129  Q
    |||||||||||||||| |||||||| ||| |||||||||||||    
T  13785154 ctatccttgttttctccaaaaactacactgaatctagttggtg 13785196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 493 - 547
Target Start/End: Original strand, 25869256 - 25869310
Alignment:
Q  493 aaataacttatgtcatgtccatgagctattttcagcttatttaaataaactctcc 547  Q
    |||||||||||| ||||||||| || | ||||||||||||||  |||||||||||    
T  25869256 aaataacttatgacatgtccataagttgttttcagcttatttccataaactctcc 25869310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 573 - 623
Target Start/End: Original strand, 39851046 - 39851096
Alignment:
Q  573 attgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagt 623  Q
    ||||||||||| ||||||||||||||||||  |||| ||||||| ||||||    
T  39851046 attgtgattggtcaatgtcaccaatgtcactcaactttatgtcatccaagt 39851096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 164 - 253
Target Start/End: Complemental strand, 3288946 - 3288857
Alignment:
Q  164 gttgtccctgtgttttatgatgtcgacccttctgttgttcgacaccagaagggtgattttggagatattttgagagctactgcaagaaga 253  Q
    ||||| ||||||||| ||||||| || || || ||||| || ||||||||||||| ||||||| |  || |||||| |||||||| ||||    
T  3288946 gttgttcctgtgtttcatgatgttgatccgtccgttgtgcgccaccagaagggtgcttttggacaagttctgagagatactgcaaaaaga 3288857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 133
Target Start/End: Complemental strand, 3289108 - 3288995
Alignment:
Q  20 ggtcagcttcacaaggggaccgagctgggaccacaactagtgcaagcaatacaaagctgccgtatagctatccttgttttctcaaaaaactatactcaat 119  Q
    |||||||||||||  || |||||||||||||||  |||| ||  ||||||  |||  |   ||||| | ||| |||||||||| |||||||| ||| |||    
T  3289108 ggtcagcttcacaccggaaccgagctgggaccaggactattggcagcaattgaaacgtctagtatatcaatcattgttttctccaaaaactacactgaat 3289009  T
Q  120 ctagttggtgtctt 133  Q
    ||||||||||||||    
T  3289008 ctagttggtgtctt 3288995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 574 - 623
Target Start/End: Original strand, 4958690 - 4958739
Alignment:
Q  574 ttgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagt 623  Q
    |||||||||| ||||||||| ||| ||| ||||||||||||||| |||||    
T  4958690 ttgtgattggtcaatgtcactaatatcatctaactctatgtcacgcaagt 4958739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 572 - 617
Target Start/End: Original strand, 8796512 - 8796557
Alignment:
Q  572 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcac 617  Q
    |||| ||||||| ||||||||||||| ||||||| |||||||||||    
T  8796512 cattttgattggtcaatgtcaccaatatcacctagctctatgtcac 8796557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 572 - 621
Target Start/End: Original strand, 43844559 - 43844608
Alignment:
Q  572 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaa 621  Q
    |||||||||||  |||| |||||||||||| | |||||||||||||||||    
T  43844559 cattgtgattgatcaatatcaccaatgtcatccaactctatgtcacccaa 43844608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 173 - 225
Target Start/End: Complemental strand, 3410872 - 3410820
Alignment:
Q  173 gtgttttatgatgtcgacccttctgttgttcgacaccagaagggtgattttgg 225  Q
    |||||||||||||| || ||||||||||| || || ||||| |||||||||||    
T  3410872 gtgttttatgatgttgatccttctgttgtacggcatcagaaaggtgattttgg 3410820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 571 - 623
Target Start/End: Complemental strand, 45191176 - 45191124
Alignment:
Q  571 gcattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagt 623  Q
    |||||||||||   ||||||||||||| ||| | |||||||||||||||||||    
T  45191176 gcattgtgattaatcaatgtcaccaatatcatccaactctatgtcacccaagt 45191124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 7e-23; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 571 - 630
Target Start/End: Complemental strand, 51265494 - 51265435
Alignment:
Q  571 gcattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagtattttct 630  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  51265494 gcattgtgattggccaatgtcaccaatgtcacccaactctatgtcacccaagtattttct 51265435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 572 - 623
Target Start/End: Original strand, 30709990 - 30710041
Alignment:
Q  572 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagt 623  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30709990 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagt 30710041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 571 - 629
Target Start/End: Complemental strand, 6271751 - 6271693
Alignment:
Q  571 gcattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagtattttc 629  Q
    ||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||    
T  6271751 gcattgtgattggccaatgtcaccaatatcacccaactctatgtcacccaagtattttc 6271693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 571 - 629
Target Start/End: Original strand, 23444358 - 23444416
Alignment:
Q  571 gcattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagtattttc 629  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||    
T  23444358 gcattgtgattggccaatgtcaccaatgtcacccaactctatgtcacccaaatattttc 23444416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 572 - 623
Target Start/End: Complemental strand, 35682214 - 35682163
Alignment:
Q  572 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagt 623  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  35682214 cattgtgattggccaatgtcaccaatatcacctaactctatgtcacccaagt 35682163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 571 - 628
Target Start/End: Original strand, 30861863 - 30861920
Alignment:
Q  571 gcattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagtatttt 628  Q
    ||||||||||||||||||||||||||| ||| | ||||||||||||||||||||||||    
T  30861863 gcattgtgattggccaatgtcaccaatatcatccaactctatgtcacccaagtatttt 30861920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 571 - 623
Target Start/End: Original strand, 3862635 - 3862687
Alignment:
Q  571 gcattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagt 623  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||| ||||    
T  3862635 gcattgtgattggccaatgtcaccaatgtcacccaactctatgtcacctaagt 3862687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 571 - 623
Target Start/End: Original strand, 3871392 - 3871444
Alignment:
Q  571 gcattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagt 623  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||| ||||    
T  3871392 gcattgtgattggccaatgtcaccaatgtcacccaactctatgtcacctaagt 3871444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 572 - 621
Target Start/End: Original strand, 47661932 - 47661981
Alignment:
Q  572 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaa 621  Q
    |||||||||||| ||||||||||||||||||| |||||||||||||||||    
T  47661932 cattgtgattggtcaatgtcaccaatgtcacccaactctatgtcacccaa 47661981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 572 - 623
Target Start/End: Original strand, 6271792 - 6271843
Alignment:
Q  572 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagt 623  Q
    |||||||||||||||||||||||||| ||||  |||||||||||||||||||    
T  6271792 cattgtgattggccaatgtcaccaatatcactcaactctatgtcacccaagt 6271843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 572 - 623
Target Start/End: Original strand, 42375100 - 42375151
Alignment:
Q  572 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagt 623  Q
    |||||||||||  ||||||||||||||||||| |||||||||||||||||||    
T  42375100 cattgtgattgatcaatgtcaccaatgtcacccaactctatgtcacccaagt 42375151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 573 - 623
Target Start/End: Original strand, 26186105 - 26186155
Alignment:
Q  573 attgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagt 623  Q
    |||||||||||||||||||| |||||| ||| |||||||||||||||||||    
T  26186105 attgtgattggccaatgtcatcaatgttacccaactctatgtcacccaagt 26186155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 572 - 621
Target Start/End: Complemental strand, 23444317 - 23444268
Alignment:
Q  572 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaa 621  Q
    |||||||||||| ||||||||||||||||||| |||||||||| ||||||    
T  23444317 cattgtgattggtcaatgtcaccaatgtcacccaactctatgttacccaa 23444268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 572 - 617
Target Start/End: Original strand, 35682256 - 35682301
Alignment:
Q  572 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcac 617  Q
    ||||||||| || |||||||||||||||||||||||||||||||||    
T  35682256 cattgtgatcggtcaatgtcaccaatgtcacctaactctatgtcac 35682301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 433 - 568
Target Start/End: Complemental strand, 2996711 - 2996578
Alignment:
Q  433 ttatttgagcttattcatcgacatgagcacttgtgagaggctatttgggagagctgattaaaataacttatgtcatgtccatgagctattttcagcttat 532  Q
    |||||||| |||||| || ||||| ||||||| |||||  || |||| ||||||| || |||| |||||||| ||||||||| |||| |||||| |||||    
T  2996711 ttatttgaacttatttattgacataagcacttttgaga--ctgtttgagagagcttatgaaaacaacttatgacatgtccataagcttttttcaacttat 2996614  T
Q  533 ttaaataaactctcccaaatggtttatgaaaacaac 568  Q
    ||  |||  |||||| | || | |||||||||||||    
T  2996613 tttcatacgctctccaagatagcttatgaaaacaac 2996578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 567 - 602
Target Start/End: Complemental strand, 30861835 - 30861800
Alignment:
Q  567 acaagcattgtgattggccaatgtcaccaatgtcac 602  Q
    ||||||||||||||||||||||||||||||||||||    
T  30861835 acaagcattgtgattggccaatgtcaccaatgtcac 30861800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 572 - 623
Target Start/End: Original strand, 51265535 - 51265586
Alignment:
Q  572 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagt 623  Q
    |||| ||||||| ||||||||||||||||||| ||||||| |||||||||||    
T  51265535 cattatgattggtcaatgtcaccaatgtcacccaactctaagtcacccaagt 51265586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 592 - 629
Target Start/End: Complemental strand, 42375047 - 42375010
Alignment:
Q  592 accaatgtcacctaactctatgtcacccaagtattttc 629  Q
    |||||||||||| |||||||||||||||||||||||||    
T  42375047 accaatgtcacccaactctatgtcacccaagtattttc 42375010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 572 - 621
Target Start/End: Original strand, 44380020 - 44380069
Alignment:
Q  572 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaa 621  Q
    |||||||||||| |||| |||||||||||||  |||||||||||||||||    
T  44380020 cattgtgattggtcaatatcaccaatgtcactcaactctatgtcacccaa 44380069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 592 - 629
Target Start/End: Original strand, 47404686 - 47404723
Alignment:
Q  592 accaatgtcacctaactctatgtcacccaagtattttc 629  Q
    |||||||||||| |||||||||||||||||||||||||    
T  47404686 accaatgtcacccaactctatgtcacccaagtattttc 47404723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 572 - 617
Target Start/End: Original strand, 53954700 - 53954745
Alignment:
Q  572 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcac 617  Q
    |||||| ||||| ||||||||||||||||||| |||||||||||||    
T  53954700 cattgtaattggacaatgtcaccaatgtcacccaactctatgtcac 53954745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 593 - 629
Target Start/End: Original strand, 31430560 - 31430596
Alignment:
Q  593 ccaatgtcacctaactctatgtcacccaagtattttc 629  Q
    ||||||||||| |||||||||||||||||||||||||    
T  31430560 ccaatgtcacccaactctatgtcacccaagtattttc 31430596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 571 - 603
Target Start/End: Complemental strand, 47661891 - 47661859
Alignment:
Q  571 gcattgtgattggccaatgtcaccaatgtcacc 603  Q
    |||||||||||||||||||||||||||||||||    
T  47661891 gcattgtgattggccaatgtcaccaatgtcacc 47661859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 572 - 623
Target Start/End: Original strand, 2325070 - 2325121
Alignment:
Q  572 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagt 623  Q
    |||||||||| | |||||||| |||||||||| ||||||||||||| |||||    
T  2325070 cattgtgatttgtcaatgtcatcaatgtcaccaaactctatgtcactcaagt 2325121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 572 - 623
Target Start/End: Original strand, 5048890 - 5048941
Alignment:
Q  572 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagt 623  Q
    |||| |||||| ||||||||| |||||||||| |||||||||||| ||||||    
T  5048890 cattatgattgaccaatgtcatcaatgtcacccaactctatgtcatccaagt 5048941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 476 - 545
Target Start/End: Original strand, 6978935 - 6979004
Alignment:
Q  476 tttgggagagctgattaaaataacttatgtcatgtccatgagctattttcagcttatttaaataaactct 545  Q
    ||||| ||| || ||| |||||||||||| |||||| || |||| ||||||||||||||  |||||||||    
T  6978935 tttggcagaacttattgaaataacttatgacatgtctataagctgttttcagcttattttcataaactct 6979004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 579 - 623
Target Start/End: Complemental strand, 44379971 - 44379927
Alignment:
Q  579 attggccaatgtcaccaatgtcacctaactctatgtcacccaagt 623  Q
    ||||||||||||| ||||||||||  |||||||||||| ||||||    
T  44379971 attggccaatgtcgccaatgtcactcaactctatgtcatccaagt 44379927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 567 - 603
Target Start/End: Original strand, 50384182 - 50384218
Alignment:
Q  567 acaagcattgtgattggccaatgtcaccaatgtcacc 603  Q
    |||||||||||||||| | ||||||||||||||||||    
T  50384182 acaagcattgtgattgacgaatgtcaccaatgtcacc 50384218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 3e-22; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 571 - 629
Target Start/End: Complemental strand, 11016918 - 11016860
Alignment:
Q  571 gcattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagtattttc 629  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  11016918 gcattgtgattggccaatgtcaccaatgtcacccaactctatgtcacccaagtattttc 11016860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 572 - 628
Target Start/End: Original strand, 45231940 - 45231996
Alignment:
Q  572 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagtatttt 628  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  45231940 cattgtgattggccaatgtcaccaatgtcacccaactctatgtcacccaagtatttt 45231996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 571 - 629
Target Start/End: Original strand, 34854784 - 34854842
Alignment:
Q  571 gcattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagtattttc 629  Q
    |||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||    
T  34854784 gcattgtgattgaccaatgtcaccaatgtcacccaactctatgtcacccaagtattttc 34854842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 571 - 629
Target Start/End: Original strand, 41018317 - 41018375
Alignment:
Q  571 gcattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagtattttc 629  Q
    ||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||    
T  41018317 gcattgtgattggtcaatgtcaccaatgtcacccaactctatgtcacccaagtattttc 41018375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 571 - 629
Target Start/End: Complemental strand, 38975854 - 38975796
Alignment:
Q  571 gcattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagtattttc 629  Q
    |||||||||||| ||||||| |||||||||||| |||||||||||||||||||||||||    
T  38975854 gcattgtgattgaccaatgttaccaatgtcacccaactctatgtcacccaagtattttc 38975796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 572 - 623
Target Start/End: Original strand, 4290635 - 4290686
Alignment:
Q  572 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagt 623  Q
    |||||||||||||||||||||||||||||||| |||| ||||||||||||||    
T  4290635 cattgtgattggccaatgtcaccaatgtcacccaactgtatgtcacccaagt 4290686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 572 - 623
Target Start/End: Original strand, 11016959 - 11017010
Alignment:
Q  572 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagt 623  Q
    |||||||||||| ||||||||||||||||||| |||||||||||||||||||    
T  11016959 cattgtgattggtcaatgtcaccaatgtcacccaactctatgtcacccaagt 11017010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 572 - 623
Target Start/End: Original strand, 42628385 - 42628436
Alignment:
Q  572 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagt 623  Q
    ||||||||||||||||| |||||||||||||| |||||||||||||||||||    
T  42628385 cattgtgattggccaatatcaccaatgtcacccaactctatgtcacccaagt 42628436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 571 - 629
Target Start/End: Complemental strand, 48000743 - 48000685
Alignment:
Q  571 gcattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagtattttc 629  Q
    ||||||||||||  ||||||||||||||||||| ||||| |||||||||||||||||||    
T  48000743 gcattgtgattgatcaatgtcaccaatgtcacccaactcaatgtcacccaagtattttc 48000685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 571 - 628
Target Start/End: Complemental strand, 4290594 - 4290537
Alignment:
Q  571 gcattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagtatttt 628  Q
    |||||||||||| ||||| |||||||| ||||| ||||||||||||||||||||||||    
T  4290594 gcattgtgattgaccaatatcaccaatatcacccaactctatgtcacccaagtatttt 4290537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 571 - 623
Target Start/End: Original strand, 48000826 - 48000878
Alignment:
Q  571 gcattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagt 623  Q
    ||||||||||||| ||||||||||||||||||| |||||||||| ||||||||    
T  48000826 gcattgtgattggtcaatgtcaccaatgtcacccaactctatgtgacccaagt 48000878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 573 - 629
Target Start/End: Complemental strand, 15027589 - 15027533
Alignment:
Q  573 attgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagtattttc 629  Q
    ||||||||||| |||||||||||||||||   |||||||||| ||||||||||||||    
T  15027589 attgtgattggtcaatgtcaccaatgtcaaacaactctatgttacccaagtattttc 15027533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 585 - 623
Target Start/End: Original strand, 38975908 - 38975946
Alignment:
Q  585 caatgtcaccaatgtcacctaactctatgtcacccaagt 623  Q
    |||||||||||||||||||||||||||||||||| ||||    
T  38975908 caatgtcaccaatgtcacctaactctatgtcacctaagt 38975946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 593 - 629
Target Start/End: Original strand, 29053416 - 29053452
Alignment:
Q  593 ccaatgtcacctaactctatgtcacccaagtattttc 629  Q
    ||||||||||| |||||||||||||||||||||||||    
T  29053416 ccaatgtcacccaactctatgtcacccaagtattttc 29053452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 572 - 623
Target Start/End: Complemental strand, 27028776 - 27028725
Alignment:
Q  572 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagt 623  Q
    ||||||||||| |||||||||||||||||||  |||| ||||||||| ||||    
T  27028776 cattgtgattgtccaatgtcaccaatgtcactcaactatatgtcaccaaagt 27028725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 433 - 543
Target Start/End: Complemental strand, 33894765 - 33894657
Alignment:
Q  433 ttatttgagcttattcatcgacatgagcacttgtgagaggctatttgggagagctgattaaaataacttatgtcatgtccatgagctattttcagcttat 532  Q
    ||||||||||||||  |  ||||| |||||||||||||  || |||| ||||||| || |||| | | |||| ||||||||| || | ||||||||||||    
T  33894765 ttatttgagcttatcaaatgacataagcacttgtgaga--ctgtttgtgagagcttatgaaaacagcatatgacatgtccataagttgttttcagcttat 33894668  T
Q  533 ttaaataaact 543  Q
    || ||||||||    
T  33894667 ttcaataaact 33894657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 476 - 567
Target Start/End: Original strand, 48157093 - 48157184
Alignment:
Q  476 tttgggagagctgattaaaataacttatgtcatgtccatgagctattttcagcttatttaaataaactctcccaaatggtttatgaaaacaa 567  Q
    |||||||||||| ||  ||| |||||||| ||||||||| |||| ||||||||||||||  ||||  |||||| ||| | || |||||||||    
T  48157093 tttgggagagcttatagaaacaacttatgccatgtccataagctgttttcagcttatttccataagatctcccgaatagcttgtgaaaacaa 48157184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 473 - 534
Target Start/End: Original strand, 3500937 - 3500998
Alignment:
Q  473 ctatttgggagagctgattaaaataacttatgtcatgtccatgagctattttcagcttattt 534  Q
    ||||||| ||||||| ||  |||||||||||| ||||| ||| |||| ||||||||||||||    
T  3500937 ctatttgtgagagcttatggaaataacttatgacatgtacatcagctgttttcagcttattt 3500998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 516 - 568
Target Start/End: Complemental strand, 39506013 - 39505961
Alignment:
Q  516 agctattttcagcttatttaaataaactctcccaaatggtttatgaaaacaac 568  Q
    |||||||||||||||||||  |||||||||||  ||| | |||||||||||||    
T  39506013 agctattttcagcttatttccataaactctccagaatagcttatgaaaacaac 39505961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 3e-22; HSPs: 29)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 571 - 629
Target Start/End: Complemental strand, 19655207 - 19655149
Alignment:
Q  571 gcattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagtattttc 629  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  19655207 gcattgtgattggccaatgtcaccaatgtcacccaactctatgtcacccaagtattttc 19655149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 571 - 629
Target Start/End: Complemental strand, 291146 - 291088
Alignment:
Q  571 gcattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagtattttc 629  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||    
T  291146 gcattgtgattggccaatgtcaccaatgtcacccaactctatgtcactcaagtattttc 291088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 572 - 623
Target Start/End: Original strand, 2953280 - 2953331
Alignment:
Q  572 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagt 623  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  2953280 cattgtgattggccaatgtcaccaatgtcacccaactctatgtcacccaagt 2953331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 573 - 629
Target Start/End: Complemental strand, 19598379 - 19598323
Alignment:
Q  573 attgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagtattttc 629  Q
    |||||||||| |||||||||||||||| ||| |||||||||||||||||||||||||    
T  19598379 attgtgattgaccaatgtcaccaatgttacccaactctatgtcacccaagtattttc 19598323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 572 - 623
Target Start/End: Original strand, 16971234 - 16971285
Alignment:
Q  572 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagt 623  Q
    |||||||||||| ||||||||||||||||||| |||||||||||||||||||    
T  16971234 cattgtgattggtcaatgtcaccaatgtcacccaactctatgtcacccaagt 16971285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 572 - 623
Target Start/End: Original strand, 29699457 - 29699508
Alignment:
Q  572 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagt 623  Q
    |||||||||||||||||||||||||| ||||| |||||||||||||||||||    
T  29699457 cattgtgattggccaatgtcaccaatatcacccaactctatgtcacccaagt 29699508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 572 - 623
Target Start/End: Original strand, 3899929 - 3899980
Alignment:
Q  572 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagt 623  Q
    |||||||||||| ||||||||||||||||||| ||||||| |||||||||||    
T  3899929 cattgtgattggtcaatgtcaccaatgtcacccaactctaagtcacccaagt 3899980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 572 - 623
Target Start/End: Original strand, 19655248 - 19655299
Alignment:
Q  572 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagt 623  Q
    |||||||||||| ||||||||||||||||||  |||||||||||||||||||    
T  19655248 cattgtgattggacaatgtcaccaatgtcactcaactctatgtcacccaagt 19655299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 575 - 623
Target Start/End: Original strand, 2356364 - 2356412
Alignment:
Q  575 tgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagt 623  Q
    ||||||||||||||||||||||||||| | ||||||||||||| |||||    
T  2356364 tgtgattggccaatgtcaccaatgtcatccaactctatgtcacacaagt 2356412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 572 - 623
Target Start/End: Original strand, 291187 - 291238
Alignment:
Q  572 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagt 623  Q
    |||||||||||  ||||||||||||||||||| |||||||| ||||||||||    
T  291187 cattgtgattgatcaatgtcaccaatgtcacccaactctatatcacccaagt 291238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 572 - 623
Target Start/End: Complemental strand, 2093985 - 2093934
Alignment:
Q  572 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagt 623  Q
    |||||||||||  ||||||||||||| ||||| |||||||||||||||||||    
T  2093985 cattgtgattgatcaatgtcaccaatatcacccaactctatgtcacccaagt 2093934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 572 - 623
Target Start/End: Complemental strand, 12913851 - 12913800
Alignment:
Q  572 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagt 623  Q
    |||||||||||||||||||||||||||||||  |||| |||||||| |||||    
T  12913851 cattgtgattggccaatgtcaccaatgtcactcaactatatgtcacacaagt 12913800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 572 - 623
Target Start/End: Complemental strand, 13312312 - 13312261
Alignment:
Q  572 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagt 623  Q
    |||||||||||  |||||||| ||||||||||||||||||||||||| ||||    
T  13312312 cattgtgattgatcaatgtcatcaatgtcacctaactctatgtcacctaagt 13312261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 572 - 626
Target Start/End: Original strand, 12913893 - 12913947
Alignment:
Q  572 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagtatt 626  Q
    ||||||||||| ||||| |||||||||||||| ||||||||||||| ||| ||||    
T  12913893 cattgtgattgaccaatatcaccaatgtcacccaactctatgtcacacaaatatt 12913947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 592 - 629
Target Start/End: Complemental strand, 2953235 - 2953198
Alignment:
Q  592 accaatgtcacctaactctatgtcacccaagtattttc 629  Q
    |||||||||||| |||||||||||||||||||||||||    
T  2953235 accaatgtcacccaactctatgtcacccaagtattttc 2953198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 593 - 630
Target Start/End: Complemental strand, 3899875 - 3899838
Alignment:
Q  593 ccaatgtcacctaactctatgtcacccaagtattttct 630  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  3899875 ccaatgtcacccaactctatgtcacccaagtattttct 3899838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 572 - 621
Target Start/End: Complemental strand, 30117876 - 30117827
Alignment:
Q  572 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaa 621  Q
    |||||||||||| |||| |||||||||||||| |||||||| ||||||||    
T  30117876 cattgtgattggtcaatatcaccaatgtcacccaactctatatcacccaa 30117827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 571 - 603
Target Start/End: Complemental strand, 29699416 - 29699384
Alignment:
Q  571 gcattgtgattggccaatgtcaccaatgtcacc 603  Q
    |||||||||||||||||||||||||||||||||    
T  29699416 gcattgtgattggccaatgtcaccaatgtcacc 29699384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 585 - 621
Target Start/End: Complemental strand, 39777086 - 39777050
Alignment:
Q  585 caatgtcaccaatgtcacctaactctatgtcacccaa 621  Q
    ||||||||||||||||||| |||||||||||||||||    
T  39777086 caatgtcaccaatgtcacccaactctatgtcacccaa 39777050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 473 - 568
Target Start/End: Original strand, 10272401 - 10272496
Alignment:
Q  473 ctatttgggagagctgattaaaataacttatgtcatgtccatgagctattttcagcttatttaaataaactctcccaaatggtttatgaaaacaac 568  Q
    ||||||||||| ||| ||  ||| |||||||| ||||||  | || | ||||||||||||||  ||||||||||| | |||| |||||||||||||    
T  10272401 ctatttgggagtgcttatagaaacaacttatgacatgtctgtaagttgttttcagcttattttcataaactctccaagatggcttatgaaaacaac 10272496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 572 - 623
Target Start/End: Original strand, 29385395 - 29385446
Alignment:
Q  572 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagt 623  Q
    ||||||| |||||||||||||||||||||||| | | | |||||||||||||    
T  29385395 cattgtggttggccaatgtcaccaatgtcaccaaccacaatgtcacccaagt 29385446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 571 - 629
Target Start/End: Original strand, 30117917 - 30117975
Alignment:
Q  571 gcattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagtattttc 629  Q
    ||||| |||||| ||||| |||||||||||| | |||||||||||| |||| |||||||    
T  30117917 gcattatgattgaccaatatcaccaatgtcatccaactctatgtcatccaaatattttc 30117975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 476 - 534
Target Start/End: Complemental strand, 32172750 - 32172692
Alignment:
Q  476 tttgggagagctgattaaaataacttatgtcatgtccatgagctattttcagcttattt 534  Q
    |||||||||||| ||  ||| |||||||| ||||||||| ||| |||||||||||||||    
T  32172750 tttgggagagcttatggaaacaacttatgacatgtccataagccattttcagcttattt 32172692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 573 - 623
Target Start/End: Original strand, 32485640 - 32485690
Alignment:
Q  573 attgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagt 623  Q
    ||||||||||  ||||||||||||||||||| |||||| |||||| |||||    
T  32485640 attgtgattgatcaatgtcaccaatgtcacccaactctgtgtcacacaagt 32485690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 454 - 534
Target Start/End: Complemental strand, 10907495 - 10907417
Alignment:
Q  454 catgagcacttgtgagaggctatttgggagagctgattaaaataacttatgtcatgtccatgagctattttcagcttattt 534  Q
    ||||| |||||||||||  || ||||| |||||| || |||| ||||||||||||||| || |||| ||||| ||||||||    
T  10907495 catgaacacttgtgaga--ctgtttggaagagcttatgaaaacaacttatgtcatgtcaataagctgttttcggcttattt 10907417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 572 - 621
Target Start/End: Original strand, 28819007 - 28819056
Alignment:
Q  572 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaa 621  Q
    |||| |||||| |||||||||||||| ||||  |||||||||||||||||    
T  28819007 cattatgattgaccaatgtcaccaatatcactcaactctatgtcacccaa 28819056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 571 - 623
Target Start/End: Original strand, 3180149 - 3180200
Alignment:
Q  571 gcattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagt 623  Q
    |||||||||||| |||||||||||||||| ||| |||||||||| || |||||    
T  3180149 gcattgtgattgaccaatgtcaccaatgttacc-aactctatgtgacacaagt 3180200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 593 - 629
Target Start/End: Complemental strand, 16971180 - 16971144
Alignment:
Q  593 ccaatgtcacctaactctatgtcacccaagtattttc 629  Q
    ||||||||||| || ||||||||||||||||||||||    
T  16971180 ccaatgtcacccaagtctatgtcacccaagtattttc 16971144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 573 - 621
Target Start/End: Complemental strand, 22083045 - 22082997
Alignment:
Q  573 attgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaa 621  Q
    ||||||||||| ||||||||  ||||||||  |||||||||||||||||    
T  22083045 attgtgattggtcaatgtcattaatgtcacacaactctatgtcacccaa 22082997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 3e-22; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 571 - 629
Target Start/End: Complemental strand, 41753013 - 41752955
Alignment:
Q  571 gcattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagtattttc 629  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  41753013 gcattgtgattggccaatgtcaccaatgtcacccaactctatgtcacccaagtattttc 41752955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 572 - 623
Target Start/End: Original strand, 30734492 - 30734543
Alignment:
Q  572 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagt 623  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30734492 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagt 30734543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 571 - 629
Target Start/End: Original strand, 51046162 - 51046220
Alignment:
Q  571 gcattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagtattttc 629  Q
    ||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||    
T  51046162 gcattgtgattggccaatgtcaccaatgtcatccaactctatgtcacccaagtattttc 51046220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 571 - 623
Target Start/End: Complemental strand, 1801495 - 1801443
Alignment:
Q  571 gcattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagt 623  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  1801495 gcattgtgattggccaatgtcaccaatgtcacccaactctatgtcacccaagt 1801443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 571 - 629
Target Start/End: Original strand, 43139798 - 43139856
Alignment:
Q  571 gcattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagtattttc 629  Q
    ||||||| ||||||||||||||||||||||||| ||||||||||||||||| |||||||    
T  43139798 gcattgttattggccaatgtcaccaatgtcacccaactctatgtcacccaaatattttc 43139856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 571 - 623
Target Start/End: Original strand, 41753053 - 41753105
Alignment:
Q  571 gcattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagt 623  Q
    ||||||||||||||||||||||||||||||||  |||||||||||||||||||    
T  41753053 gcattgtgattggccaatgtcaccaatgtcactcaactctatgtcacccaagt 41753105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 572 - 629
Target Start/End: Original strand, 47492137 - 47492194
Alignment:
Q  572 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagtattttc 629  Q
    ||||||||||||||||| | |||||||||||| ||||||||||||||||| |||||||    
T  47492137 cattgtgattggccaatatgaccaatgtcacccaactctatgtcacccaactattttc 47492194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 573 - 623
Target Start/End: Complemental strand, 55223279 - 55223229
Alignment:
Q  573 attgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagt 623  Q
    |||||||||| ||||| |||||||||||||||||||||||||||| |||||    
T  55223279 attgtgattgaccaatatcaccaatgtcacctaactctatgtcacacaagt 55223229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 572 - 623
Target Start/End: Complemental strand, 45103157 - 45103106
Alignment:
Q  572 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagt 623  Q
    |||||||||||  |||| |||||||||||||| |||||||||||||||||||    
T  45103157 cattgtgattgatcaatatcaccaatgtcacccaactctatgtcacccaagt 45103106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 593 - 629
Target Start/End: Original strand, 1801597 - 1801633
Alignment:
Q  593 ccaatgtcacctaactctatgtcacccaagtattttc 629  Q
    ||||||||||| |||||||||||||||||||||||||    
T  1801597 ccaatgtcacccaactctatgtcacccaagtattttc 1801633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 572 - 623
Target Start/End: Complemental strand, 18321699 - 18321648
Alignment:
Q  572 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagt 623  Q
    ||||||||||| |||||||||||||| ||||| ||||||||||  |||||||    
T  18321699 cattgtgattgaccaatgtcaccaatatcacccaactctatgttgcccaagt 18321648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 572 - 623
Target Start/End: Complemental strand, 30734450 - 30734399
Alignment:
Q  572 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagt 623  Q
    ||||||||| || |||||||| |||||||||| ||||||||||||| |||||    
T  30734450 cattgtgatcggtcaatgtcatcaatgtcaccaaactctatgtcacacaagt 30734399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 572 - 623
Target Start/End: Complemental strand, 33689224 - 33689173
Alignment:
Q  572 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagt 623  Q
    ||||||||||| ||||| ||| |||||||||| ||||||||||||| |||||    
T  33689224 cattgtgattgaccaatatcatcaatgtcacccaactctatgtcacacaagt 33689173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 572 - 603
Target Start/End: Complemental strand, 47492095 - 47492064
Alignment:
Q  572 cattgtgattggccaatgtcaccaatgtcacc 603  Q
    ||||||||||||||||||||||||||||||||    
T  47492095 cattgtgattggccaatgtcaccaatgtcacc 47492064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 572 - 623
Target Start/End: Original strand, 50524792 - 50524843
Alignment:
Q  572 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagt 623  Q
    ||||||||||| | ||| |||||||||||||  |||||||||||||||||||    
T  50524792 cattgtgattgactaatatcaccaatgtcactcaactctatgtcacccaagt 50524843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 572 - 614
Target Start/End: Original strand, 39057047 - 39057089
Alignment:
Q  572 cattgtgattggccaatgtcaccaatgtcacctaactctatgt 614  Q
    |||||| |||| || ||||||||||||||||||||||||||||    
T  39057047 cattgtcattgtccgatgtcaccaatgtcacctaactctatgt 39057089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 573 - 623
Target Start/End: Original strand, 39429996 - 39430046
Alignment:
Q  573 attgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagt 623  Q
    |||||| |||||||||||||| ||||||||| |||| |||||||| |||||    
T  39429996 attgtgcttggccaatgtcactaatgtcacccaactttatgtcactcaagt 39430046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 433 - 545
Target Start/End: Original strand, 49465869 - 49465978
Alignment:
Q  433 ttatttgagcttattcatcgacatgagcacttgtgagaggctatttgggagagctgattaaaataacttatgtcatgtccatgagctattttcagcttat 532  Q
    |||||||||||||| |||   ||| | ||||||||||||    |||| ||||||| ||  ||| |||||||| ||||||||||| ||||||||| |||||    
T  49465869 ttatttgagcttatccattagcataaacacttgtgagagt---tttgtgagagcttatagaaacaacttatgacatgtccatgaactattttcaacttat 49465965  T
Q  533 ttaaataaactct 545  Q
    ||  |||||||||    
T  49465966 ttccataaactct 49465978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 590 - 623
Target Start/End: Original strand, 1272557 - 1272590
Alignment:
Q  590 tcaccaatgtcacctaactctatgtcacccaagt 623  Q
    |||||||||||||| |||||||||||||||||||    
T  1272557 tcaccaatgtcacccaactctatgtcacccaagt 1272590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 473 - 546
Target Start/End: Original strand, 36646352 - 36646425
Alignment:
Q  473 ctatttgggagagctgattaaaataacttatgtcatgtccatgagctattttcagcttatttaaataaactctc 546  Q
    ||||||||||||||| ||  |||  ||||||| ||||||||| |||| |||||| |||||||  ||||||||||    
T  36646352 ctatttgggagagcttatggaaaccacttatggcatgtccataagctgttttcatcttatttctataaactctc 36646425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 572 - 616
Target Start/End: Original strand, 30580846 - 30580890
Alignment:
Q  572 cattgtgattggccaatgtcaccaatgtcacctaactctatgtca 616  Q
    ||||||||||| |||||||||| ||||||||| || |||||||||    
T  30580846 cattgtgattgaccaatgtcacaaatgtcacccaattctatgtca 30580890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 3e-22; HSPs: 38)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 571 - 629
Target Start/End: Original strand, 29179686 - 29179744
Alignment:
Q  571 gcattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagtattttc 629  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  29179686 gcattgtgattggccaatgtcaccaatgtcacccaactctatgtcacccaagtattttc 29179744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 571 - 629
Target Start/End: Complemental strand, 46932046 - 46931988
Alignment:
Q  571 gcattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagtattttc 629  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  46932046 gcattgtgattggccaatgtcaccaatgtcacccaactctatgtcacccaagtattttc 46931988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 572 - 629
Target Start/End: Complemental strand, 37155094 - 37155037
Alignment:
Q  572 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagtattttc 629  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  37155094 cattgtgattggccaatgtcaccaatgtcaccaaactctatgtcacccaagtattttc 37155037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 571 - 629
Target Start/End: Original strand, 44706873 - 44706931
Alignment:
Q  571 gcattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagtattttc 629  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||    
T  44706873 gcattgtgattggccaatgtcaccaatgtcacccaactctatgtcacccaaatattttc 44706931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 571 - 629
Target Start/End: Original strand, 48994006 - 48994064
Alignment:
Q  571 gcattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagtattttc 629  Q
    ||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||    
T  48994006 gcattgtgattggtcaatgtcaccaatgtcacccaactctatgtcacccaagtattttc 48994064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 571 - 629
Target Start/End: Complemental strand, 5995418 - 5995360
Alignment:
Q  571 gcattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagtattttc 629  Q
    |||||||||||||||||||| |||||||||| | |||||||||||||||||||||||||    
T  5995418 gcattgtgattggccaatgttaccaatgtcatcaaactctatgtcacccaagtattttc 5995360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 572 - 623
Target Start/End: Complemental strand, 48993965 - 48993914
Alignment:
Q  572 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagt 623  Q
    |||||||||||| ||||||||||||||||||| |||||||||||||||||||    
T  48993965 cattgtgattggtcaatgtcaccaatgtcacccaactctatgtcacccaagt 48993914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 571 - 623
Target Start/End: Original strand, 5995458 - 5995510
Alignment:
Q  571 gcattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagt 623  Q
    ||||||||||||| ||||||||||||||||| | |||||||||||||||||||    
T  5995458 gcattgtgattggtcaatgtcaccaatgtcatccaactctatgtcacccaagt 5995510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 573 - 621
Target Start/End: Original strand, 15220902 - 15220950
Alignment:
Q  573 attgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaa 621  Q
    |||||||||||||||| |||||||||||||| |||||||||||||||||    
T  15220902 attgtgattggccaatatcaccaatgtcacccaactctatgtcacccaa 15220950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 572 - 624
Target Start/End: Original strand, 36290497 - 36290549
Alignment:
Q  572 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagta 624  Q
    |||||||||||| ||||| ||||||||||||| ||||||||||||||||||||    
T  36290497 cattgtgattggtcaatgccaccaatgtcacccaactctatgtcacccaagta 36290549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 571 - 623
Target Start/End: Original strand, 46932071 - 46932122
Alignment:
Q  571 gcattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagt 623  Q
    ||||||||||||| ||||||||||||||||||| |||||||||||||||||||    
T  46932071 gcattgtgattggtcaatgtcaccaatgtcacc-aactctatgtcacccaagt 46932122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 577 - 629
Target Start/End: Complemental strand, 48498458 - 48498406
Alignment:
Q  577 tgattggccaatgtcaccaatgtcacctaactctatgtcacccaagtattttc 629  Q
    |||||| |||||||||| ||||||||| |||||||||||||||||||||||||    
T  48498458 tgattgaccaatgtcacaaatgtcacccaactctatgtcacccaagtattttc 48498406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 460 - 543
Target Start/End: Original strand, 3597240 - 3597321
Alignment:
Q  460 cacttgtgagaggctatttgggagagctgattaaaataacttatgtcatgtccatgagctattttcagcttatttaaataaact 543  Q
    |||||||||||  || ||||| |||| |||| ||||||||||||| |||| |||| |||||||||||||||||||  |||||||    
T  3597240 cacttgtgaga--ctgtttggaagagttgataaaaataacttatgacatggccataagctattttcagcttatttccataaact 3597321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 420 - 547
Target Start/End: Complemental strand, 10439837 - 10439712
Alignment:
Q  420 tgtttgagttgagttatttgagcttattcatcgacatgagcacttgtgagaggctatttgggagagctgattaaaataacttatgtcatgtccatgagct 519  Q
    ||||||| |||| ||||||||||||||| || | ||| ||  |||||||||  ||||||||||||||| || |||| ||  |||| ||||||||| | ||    
T  10439837 tgtttgaattgacttatttgagcttatttatggccataagatcttgtgaga--ctatttgggagagcttatgaaaacaaactatgacatgtccataatct 10439740  T
Q  520 attttcagcttatttaaataaactctcc 547  Q
      |||||||||||||  |||||||||||    
T  10439739 gctttcagcttatttccataaactctcc 10439712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 572 - 623
Target Start/End: Original strand, 1091634 - 1091685
Alignment:
Q  572 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagt 623  Q
    |||||||||||| ||| ||||||||| ||||| |||||||||||||||||||    
T  1091634 cattgtgattggtcaaagtcaccaatatcacccaactctatgtcacccaagt 1091685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 572 - 623
Target Start/End: Complemental strand, 9157358 - 9157307
Alignment:
Q  572 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagt 623  Q
    |||||||||||| |||||| |||||||||||| ||||||||||||| |||||    
T  9157358 cattgtgattggtcaatgttaccaatgtcacccaactctatgtcacacaagt 9157307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 572 - 623
Target Start/End: Complemental strand, 17127612 - 17127561
Alignment:
Q  572 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagt 623  Q
    |||||||||||| ||||||||| |||||||||||||||||| |||| |||||    
T  17127612 cattgtgattggtcaatgtcactaatgtcacctaactctatatcacacaagt 17127561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 572 - 623
Target Start/End: Original strand, 17127654 - 17127705
Alignment:
Q  572 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagt 623  Q
    |||| ||||||| ||||||||| |||||||||||||||||| ||||||||||    
T  17127654 cattttgattggtcaatgtcactaatgtcacctaactctatatcacccaagt 17127705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 572 - 623
Target Start/End: Complemental strand, 21630090 - 21630039
Alignment:
Q  572 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagt 623  Q
    |||||||||||| ||||||||||||||||||| |||| |||||||| |||||    
T  21630090 cattgtgattggtcaatgtcaccaatgtcacccaactttatgtcacgcaagt 21630039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 572 - 623
Target Start/End: Complemental strand, 29179645 - 29179594
Alignment:
Q  572 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagt 623  Q
    |||||||||||| || |||||||||||||||| |||||||||||| ||||||    
T  29179645 cattgtgattggtcagtgtcaccaatgtcacccaactctatgtcatccaagt 29179594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 572 - 623
Target Start/End: Original strand, 29371458 - 29371509
Alignment:
Q  572 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagt 623  Q
    |||||||||||| |||| |||||||||||||||| ||||||||||| |||||    
T  29371458 cattgtgattggtcaatatcaccaatgtcacctagctctatgtcacacaagt 29371509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 572 - 623
Target Start/End: Complemental strand, 31342311 - 31342260
Alignment:
Q  572 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagt 623  Q
    ||||||||||||||||||||| |  ||||||| |||||||||||||||||||    
T  31342311 cattgtgattggccaatgtcatcggtgtcacccaactctatgtcacccaagt 31342260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 572 - 623
Target Start/End: Original strand, 32540838 - 32540889
Alignment:
Q  572 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagt 623  Q
    |||||||||||| ||||||||||||||||| | || ||||||||||||||||    
T  32540838 cattgtgattggtcaatgtcaccaatgtcatccaattctatgtcacccaagt 32540889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 572 - 623
Target Start/End: Complemental strand, 49444961 - 49444910
Alignment:
Q  572 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagt 623  Q
    |||||||||||  | ||||||||||||||||| |||||||||||||||||||    
T  49444961 cattgtgattgatcgatgtcaccaatgtcacccaactctatgtcacccaagt 49444910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 572 - 621
Target Start/End: Complemental strand, 28395685 - 28395636
Alignment:
Q  572 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaa 621  Q
    |||||||||||| ||||||||||||||||||  |||||||||| ||||||    
T  28395685 cattgtgattggtcaatgtcaccaatgtcactcaactctatgttacccaa 28395636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 572 - 613
Target Start/End: Complemental strand, 32540796 - 32540755
Alignment:
Q  572 cattgtgattggccaatgtcaccaatgtcacctaactctatg 613  Q
    |||||||||||||||||| ||||||||||||| |||||||||    
T  32540796 cattgtgattggccaatgccaccaatgtcacccaactctatg 32540755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 593 - 629
Target Start/End: Original strand, 49445013 - 49445049
Alignment:
Q  593 ccaatgtcacctaactctatgtcacccaagtattttc 629  Q
    ||||||||||| |||||||||||||||||||||||||    
T  49445013 ccaatgtcacccaactctatgtcacccaagtattttc 49445049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 594 - 629
Target Start/End: Original strand, 8337954 - 8337989
Alignment:
Q  594 caatgtcacctaactctatgtcacccaagtattttc 629  Q
    |||||||||| |||||||||||||||||||||||||    
T  8337954 caatgtcacccaactctatgtcacccaagtattttc 8337989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 572 - 623
Target Start/End: Original strand, 12441045 - 12441096
Alignment:
Q  572 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagt 623  Q
    |||||||||| ||||||| ||||||||||||| || ||||||||| ||||||    
T  12441045 cattgtgattagccaatgccaccaatgtcaccaaattctatgtcatccaagt 12441096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 433 - 547
Target Start/End: Original strand, 31517672 - 31517784
Alignment:
Q  433 ttatttgagcttattcatcgacatgagcacttgtgagaggctatttgggagagctgattaaaataacttatgtcatgtccatgagctattttcagcttat 532  Q
    ||||||||||||||| |  | ||| |||||||||||||  || ||||||||| || || |||| |||| ||| ||||| ||| |||| ||||||||||||    
T  31517672 ttatttgagcttatttactggcataagcacttgtgaga--ctgtttgggagaacttatcaaaacaactcatgacatgttcataagctgttttcagcttat 31517769  T
Q  533 ttaaataaactctcc 547  Q
    ||  |||| ||||||    
T  31517770 tttcataagctctcc 31517784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 572 - 623
Target Start/End: Original strand, 33219663 - 33219714
Alignment:
Q  572 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagt 623  Q
    |||||||||||  ||||||||||||||||| | |||||||||| ||||||||    
T  33219663 cattgtgattgatcaatgtcaccaatgtcatccaactctatgttacccaagt 33219714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 572 - 623
Target Start/End: Complemental strand, 36381640 - 36381589
Alignment:
Q  572 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagt 623  Q
    |||||||||||||||||||||||||| ||| | || ||||||||| ||||||    
T  36381640 cattgtgattggccaatgtcaccaatatcatcgaattctatgtcatccaagt 36381589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 473 - 534
Target Start/End: Complemental strand, 6262838 - 6262777
Alignment:
Q  473 ctatttgggagagctgattaaaataacttatgtcatgtccatgagctattttcagcttattt 534  Q
    ||||||||||||||| || |||||||||||||  |||||||| || | |||| |||||||||    
T  6262838 ctatttgggagagcttatgaaaataacttatgatatgtccataagttgttttaagcttattt 6262777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 428 - 564
Target Start/End: Original strand, 10199335 - 10199469
Alignment:
Q  428 ttgagttatttgagcttattcatcgacatgagcacttgtgagaggctatttgggagagctgattaaaataacttatgtcatgtccatgagctattttcag 527  Q
    |||| ||||||||||||||  |   |||| ||||||||||| |  |||||||||||| || || |||||| |||||| ||||| ||| || | |||||||    
T  10199335 ttgacttatttgagcttatctactaacataagcacttgtgaca--ctatttgggagaactcatgaaaatagcttatgacatgttcataagttgttttcag 10199432  T
Q  528 cttatttaaataaactctcccaaatggtttatgaaaa 564  Q
    |||||||  |||| |||||  |||| | |||||||||    
T  10199433 cttattttcataagctctctaaaatagcttatgaaaa 10199469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 594 - 623
Target Start/End: Original strand, 44183438 - 44183467
Alignment:
Q  594 caatgtcacctaactctatgtcacccaagt 623  Q
    ||||||||||||||||||||||||||||||    
T  44183438 caatgtcacctaactctatgtcacccaagt 44183467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 593 - 621
Target Start/End: Complemental strand, 29371404 - 29371376
Alignment:
Q  593 ccaatgtcacctaactctatgtcacccaa 621  Q
    |||||||||||||||||||||||||||||    
T  29371404 ccaatgtcacctaactctatgtcacccaa 29371376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 593 - 629
Target Start/End: Complemental strand, 34062245 - 34062209
Alignment:
Q  593 ccaatgtcacctaactctatgtcacccaagtattttc 629  Q
    ||||||||||| ||||||||||||||||| |||||||    
T  34062245 ccaatgtcacccaactctatgtcacccaaatattttc 34062209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 594 - 630
Target Start/End: Original strand, 46334049 - 46334085
Alignment:
Q  594 caatgtcacctaactctatgtcacccaagtattttct 630  Q
    |||||||| | ||||||||||||||||||||||||||    
T  46334049 caatgtcatccaactctatgtcacccaagtattttct 46334085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 7e-20; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 571 - 629
Target Start/End: Complemental strand, 16514473 - 16514415
Alignment:
Q  571 gcattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagtattttc 629  Q
    |||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  16514473 gcatagtgattggccaatgtcaccaatgtcacccaactctatgtcacccaagtattttc 16514415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 571 - 629
Target Start/End: Original strand, 29508780 - 29508838
Alignment:
Q  571 gcattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagtattttc 629  Q
    ||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||    
T  29508780 gcattgtgattggccaatgtcaccaatatcacccaactctatgtcacccaagtattttc 29508838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 571 - 622
Target Start/End: Complemental strand, 6217273 - 6217222
Alignment:
Q  571 gcattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaag 622  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  6217273 gcattgtgattggccaatgtcaccaatgtcacccaactctatgtcacccaag 6217222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 571 - 629
Target Start/End: Original strand, 9173070 - 9173128
Alignment:
Q  571 gcattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagtattttc 629  Q
    |||||||||||||||||| |||||||||||||| |||||||||||||| || |||||||    
T  9173070 gcattgtgattggccaatatcaccaatgtcacccaactctatgtcacctaaatattttc 9173128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 572 - 623
Target Start/End: Complemental strand, 14470640 - 14470589
Alignment:
Q  572 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagt 623  Q
    |||||||||||| ||||||||||||||||||| ||||||||||||| |||||    
T  14470640 cattgtgattggtcaatgtcaccaatgtcacccaactctatgtcacacaagt 14470589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 572 - 623
Target Start/End: Original strand, 16514514 - 16514565
Alignment:
Q  572 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagt 623  Q
    |||||||||||| ||||||||||||| ||||| |||||||||||||||||||    
T  16514514 cattgtgattggtcaatgtcaccaatctcacccaactctatgtcacccaagt 16514565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 572 - 623
Target Start/End: Original strand, 32545878 - 32545929
Alignment:
Q  572 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagt 623  Q
    |||| ||||||||||||||||||||||||||  |||||||||||||||||||    
T  32545878 cattatgattggccaatgtcaccaatgtcactaaactctatgtcacccaagt 32545929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 586 - 629
Target Start/End: Complemental strand, 37633025 - 37632982
Alignment:
Q  586 aatgtcaccaatgtcacctaactctatgtcacccaagtattttc 629  Q
    |||||||||||||||||| |||||||||||||||||||||||||    
T  37633025 aatgtcaccaatgtcaccaaactctatgtcacccaagtattttc 37632982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 572 - 623
Target Start/End: Original strand, 38933677 - 38933728
Alignment:
Q  572 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagt 623  Q
    |||| ||||||||||| ||||||||||||||| |||||||||||||||||||    
T  38933677 cattatgattggccaacgtcaccaatgtcacccaactctatgtcacccaagt 38933728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 572 - 618
Target Start/End: Complemental strand, 14229401 - 14229355
Alignment:
Q  572 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcacc 618  Q
    ||||||||||| |||||||||||||||||||| ||||||||||||||    
T  14229401 cattgtgattgaccaatgtcaccaatgtcaccgaactctatgtcacc 14229355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 574 - 623
Target Start/End: Complemental strand, 29508736 - 29508687
Alignment:
Q  574 ttgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagt 623  Q
    |||||||||| ||||||||||||||||||| |||||||||||||| ||||    
T  29508736 ttgtgattggtcaatgtcaccaatgtcacccaactctatgtcacctaagt 29508687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 572 - 623
Target Start/End: Original strand, 6722041 - 6722092
Alignment:
Q  572 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagt 623  Q
    ||||||||||||||||| |||| ||||||| | |||||||||||||||||||    
T  6722041 cattgtgattggccaatatcactaatgtcaaccaactctatgtcacccaagt 6722092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 584 - 623
Target Start/End: Complemental strand, 32545822 - 32545783
Alignment:
Q  584 ccaatgtcaccaatgtcacctaactctatgtcacccaagt 623  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  32545822 ccaatgtcaccaatgtcacctaactctatgtcacctaagt 32545783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 572 - 621
Target Start/End: Original strand, 14892350 - 14892399
Alignment:
Q  572 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaa 621  Q
    |||||||||||  ||||||||||||||||| | |||||||||||||||||    
T  14892350 cattgtgattgatcaatgtcaccaatgtcatccaactctatgtcacccaa 14892399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 574 - 623
Target Start/End: Original strand, 45213892 - 45213941
Alignment:
Q  574 ttgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagt 623  Q
    |||||||||| |||||||| |||||||||| ||||||||||||| |||||    
T  45213892 ttgtgattggtcaatgtcatcaatgtcacccaactctatgtcacacaagt 45213941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 593 - 629
Target Start/End: Original strand, 6217326 - 6217362
Alignment:
Q  593 ccaatgtcacctaactctatgtcacccaagtattttc 629  Q
    ||||||||||| |||||||||||||||||||||||||    
T  6217326 ccaatgtcacccaactctatgtcacccaagtattttc 6217362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 572 - 616
Target Start/End: Original strand, 33018635 - 33018679
Alignment:
Q  572 cattgtgattggccaatgtcaccaatgtcacctaactctatgtca 616  Q
    ||||||||||| ||||| |||||||||||||| ||||||||||||    
T  33018635 cattgtgattgaccaatatcaccaatgtcacccaactctatgtca 33018679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 571 - 623
Target Start/End: Original strand, 37961795 - 37961847
Alignment:
Q  571 gcattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagt 623  Q
    ||||||||||||| ||||||||| ||| ||||  |||||||||||||||||||    
T  37961795 gcattgtgattggtcaatgtcacaaatatcactcaactctatgtcacccaagt 37961847  T

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Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 594 - 629
Target Start/End: Complemental strand, 1992271 - 1992236
Alignment:
Q  594 caatgtcacctaactctatgtcacccaagtattttc 629  Q
    ||||||||||||||||||||||| ||||||||||||    
T  1992271 caatgtcacctaactctatgtcatccaagtattttc 1992236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 572 - 623
Target Start/End: Complemental strand, 39819111 - 39819060
Alignment:
Q  572 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagt 623  Q
    ||||||| |||||||||||||||||||||||| | | | |||||||||||||    
T  39819111 cattgtggttggccaatgtcaccaatgtcaccaaccacaatgtcacccaagt 39819060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 592 - 626
Target Start/End: Complemental strand, 9173018 - 9172984
Alignment:
Q  592 accaatgtcacctaactctatgtcacccaagtatt 626  Q
    |||||||||||| ||||||||||||||||||||||    
T  9173018 accaatgtcacccaactctatgtcacccaagtatt 9172984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 295 - 357
Target Start/End: Complemental strand, 14770393 - 14770331
Alignment:
Q  295 gtggaggagtgcacttactcgagctgctgatttctctggttgggatgtccccaattgcaggta 357  Q
    |||||||| ||||||||| | ||||||  |||| |||||||||||||||  ||||||||||||    
T  14770393 gtggaggaatgcacttaccctagctgcaaatttatctggttgggatgtcaacaattgcaggta 14770331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 473 - 545
Target Start/End: Original strand, 1742002 - 1742074
Alignment:
Q  473 ctatttgggagagctgattaaaataacttatgtcatgtccatgagctattttcagcttatttaaataaactct 545  Q
    ||||||||||||||| ||  ||| |||||||| ||||| ||| |||||| |||| |||||||  |||||||||    
T  1742002 ctatttgggagagcttatggaaacaacttatgacatgtgcataagctatcttcaacttatttccataaactct 1742074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 571 - 603
Target Start/End: Complemental strand, 15011329 - 15011297
Alignment:
Q  571 gcattgtgattggccaatgtcaccaatgtcacc 603  Q
    |||||||||||||||||| ||||||||||||||    
T  15011329 gcattgtgattggccaatatcaccaatgtcacc 15011297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 593 - 629
Target Start/End: Original strand, 29925672 - 29925708
Alignment:
Q  593 ccaatgtcacctaactctatgtcacccaagtattttc 629  Q
    ||||||||||| |||||||||| ||||||||||||||    
T  29925672 ccaatgtcacccaactctatgttacccaagtattttc 29925708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 580 - 624
Target Start/End: Original strand, 30610274 - 30610317
Alignment:
Q  580 ttggccaatgtcaccaatgtcacctaactctatgtcacccaagta 624  Q
    ||||||||||||||||||| |||| || |||||||||||||||||    
T  30610274 ttggccaatgtcaccaatgccacc-aattctatgtcacccaagta 30610317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0161 (Bit Score: 47; Significance: 2e-17; HSPs: 2)
Name: scaffold0161
Description:

Target: scaffold0161; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 571 - 629
Target Start/End: Original strand, 27309 - 27367
Alignment:
Q  571 gcattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagtattttc 629  Q
    |||||||||||||||||| |||||||||||||| |||||||| ||||||||||||||||    
T  27309 gcattgtgattggccaatatcaccaatgtcacccaactctatatcacccaagtattttc 27367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0161; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 572 - 623
Target Start/End: Complemental strand, 27268 - 27217
Alignment:
Q  572 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagt 623  Q
    ||||||||||||||||| |||| ||||||||| |||||||||||||||||||    
T  27268 cattgtgattggccaatatcactaatgtcacccaactctatgtcacccaagt 27217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 2e-17; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 571 - 629
Target Start/End: Complemental strand, 24975801 - 24975743
Alignment:
Q  571 gcattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagtattttc 629  Q
    |||||||||||| |||||||||||||||||| | |||||||||||||||||||||||||    
T  24975801 gcattgtgattgaccaatgtcaccaatgtcagccaactctatgtcacccaagtattttc 24975743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 571 - 629
Target Start/End: Original strand, 551254 - 551312
Alignment:
Q  571 gcattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagtattttc 629  Q
    ||||||||||||||||||||||||||| ||| | || |||||||||||||| |||||||    
T  551254 gcattgtgattggccaatgtcaccaatatcatccaattctatgtcacccaaatattttc 551312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 572 - 623
Target Start/End: Complemental strand, 24587509 - 24587458
Alignment:
Q  572 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagt 623  Q
    ||||||||||| |||||||||| ||||||||| |||||||||||||| ||||    
T  24587509 cattgtgattgaccaatgtcactaatgtcacccaactctatgtcacctaagt 24587458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 572 - 623
Target Start/End: Complemental strand, 24618649 - 24618598
Alignment:
Q  572 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagt 623  Q
    |||||||||||  ||||||||||||||||||| ||||||||||||| |||||    
T  24618649 cattgtgattgatcaatgtcaccaatgtcacccaactctatgtcactcaagt 24618598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 572 - 614
Target Start/End: Original strand, 12343190 - 12343232
Alignment:
Q  572 cattgtgattggccaatgtcaccaatgtcacctaactctatgt 614  Q
    |||||||||||||||||||||||||| ||||| ||||||||||    
T  12343190 cattgtgattggccaatgtcaccaatctcacccaactctatgt 12343232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 573 - 621
Target Start/End: Original strand, 13043548 - 13043596
Alignment:
Q  573 attgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaa 621  Q
    ||||||||| ||||||||||||||| ||||  |||||||||||||||||    
T  13043548 attgtgattagccaatgtcaccaatatcactcaactctatgtcacccaa 13043596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 572 - 623
Target Start/End: Complemental strand, 17750950 - 17750900
Alignment:
Q  572 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagt 623  Q
    ||||||||||| |||||||||||||||||| | ||||||||||||| |||||    
T  17750950 cattgtgattgaccaatgtcaccaatgtcatc-aactctatgtcacacaagt 17750900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 572 - 623
Target Start/End: Original strand, 17750992 - 17751043
Alignment:
Q  572 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagt 623  Q
    ||||||||| ||||||||||| |||| ||||| ||||||||||||| |||||    
T  17750992 cattgtgatcggccaatgtcatcaatatcacccaactctatgtcacacaagt 17751043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 497 - 567
Target Start/End: Original strand, 9667979 - 9668049
Alignment:
Q  497 aacttatgtcatgtccatgagctattttcagcttatttaaataaactctcccaaatggtttatgaaaacaa 567  Q
    |||||||| ||||||||| |||| |||||| |||||||  |||| |||||| |||  ||||||||||||||    
T  9667979 aacttatgacatgtccataagctgttttcaacttatttccataagctctccgaaacagtttatgaaaacaa 9668049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 595 - 629
Target Start/End: Complemental strand, 12343134 - 12343100
Alignment:
Q  595 aatgtcacctaactctatgtcacccaagtattttc 629  Q
    ||||||||| |||||||||||||||||||||||||    
T  12343134 aatgtcacccaactctatgtcacccaagtattttc 12343100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 583 - 629
Target Start/End: Complemental strand, 13043485 - 13043439
Alignment:
Q  583 gccaatgtcaccaatgtcacctaactctatgtcacccaagtattttc 629  Q
    |||||| |||||||||||||| || |||||||||||||| |||||||    
T  13043485 gccaatatcaccaatgtcacccaattctatgtcacccaaatattttc 13043439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 476 - 534
Target Start/End: Original strand, 32577959 - 32578017
Alignment:
Q  476 tttgggagagctgattaaaataacttatgtcatgtccatgagctattttcagcttattt 534  Q
    |||| ||||||| || |||| |||||||| ||||||| |||||| ||||||||||||||    
T  32577959 tttgagagagcttatgaaaacaacttatgacatgtccttgagctgttttcagcttattt 32578017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 458 - 546
Target Start/End: Original strand, 34538175 - 34538261
Alignment:
Q  458 agcacttgtgagaggctatttgggagagctgattaaaataacttatgtcatgtccatgagctattttcagcttatttaaataaactctc 546  Q
    |||||||||||||  ||||||| |||| || || |||| | |||| | ||||||||| | |||||||||||||||||| | ||||||||    
T  34538175 agcacttgtgaga--ctatttgagagatcttataaaaacagcttacgacatgtccataaactattttcagcttatttatacaaactctc 34538261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0586 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: scaffold0586
Description:

Target: scaffold0586; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 572 - 623
Target Start/End: Original strand, 7137 - 7187
Alignment:
Q  572 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagt 623  Q
    |||||||||||||||||||||||||||||||| ||||||||||||| |||||    
T  7137 cattgtgattggccaatgtcaccaatgtcacc-aactctatgtcacacaagt 7187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0586; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 572 - 617
Target Start/End: Complemental strand, 7095 - 7050
Alignment:
Q  572 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcac 617  Q
    ||||||||||||| ||| |||||||||||||| |||||||||||||    
T  7095 cattgtgattggctaatatcaccaatgtcacccaactctatgtcac 7050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 572 - 623
Target Start/End: Complemental strand, 49751 - 49700
Alignment:
Q  572 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagt 623  Q
    |||||||||||| |||||||| |||||||||| |||||||||||||||||||    
T  49751 cattgtgattggtcaatgtcatcaatgtcacccaactctatgtcacccaagt 49700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 593 - 629
Target Start/End: Original strand, 49805 - 49841
Alignment:
Q  593 ccaatgtcacctaactctatgtcacccaagtattttc 629  Q
    |||||||||||||||||||||||||| ||||||||||    
T  49805 ccaatgtcacctaactctatgtcaccgaagtattttc 49841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 593 - 628
Target Start/End: Complemental strand, 63793 - 63758
Alignment:
Q  593 ccaatgtcacctaactctatgtcacccaagtatttt 628  Q
    ||||||||||| ||||||||||||||||||||||||    
T  63793 ccaatgtcacccaactctatgtcacccaagtatttt 63758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0481 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0481
Description:

Target: scaffold0481; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 580 - 621
Target Start/End: Original strand, 2974 - 3015
Alignment:
Q  580 ttggccaatgtcaccaatgtcacctaactctatgtcacccaa 621  Q
    ||||||||||||||| |||||||| |||||||||||| ||||    
T  2974 ttggccaatgtcaccgatgtcacccaactctatgtcagccaa 3015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0468 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0468
Description:

Target: scaffold0468; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 93 - 133
Target Start/End: Complemental strand, 9014 - 8974
Alignment:
Q  93 ttgttttctcaaaaaactatactcaatctagttggtgtctt 133  Q
    ||||||||||| || |||| |||||||||||||||||||||    
T  9014 ttgttttctcacaacactacactcaatctagttggtgtctt 8974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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