View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12658_low_20 (Length: 296)
Name: NF12658_low_20
Description: NF12658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12658_low_20 |
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| [»] scaffold0026 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 20 - 290
Target Start/End: Complemental strand, 25812888 - 25812618
Alignment:
| Q |
20 |
ctttatacatttgtatattcaccaacaaagaatatgccaatgactcatgatgaagttagaagaattgattcttcatttttggatagatattagatactat |
119 |
Q |
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| T |
25812888 |
ctttatacatttgtatattcaccaacaaagaatatgccaatgactcatgatgaagtcagaagaattgattcttcaattttggatagatattagatactat |
25812789 |
T |
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| Q |
120 |
actctataatatttatagtacatgacaagttggaccttttgaggtcattggatttttcttgcaaagtaattaccatcacacaaattcatatgaaggtatc |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
25812788 |
actctataatatttatagtacatgacaagttggaccttttgaggtcattggatttttcttgcaaagtaattaccctcacacaaattcatatgaaggtatc |
25812689 |
T |
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| Q |
220 |
aaacgtggcagcaaggtgtgatagatgtttcacagtggctgaaataattgattgtgaagaacctatgctac |
290 |
Q |
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| T |
25812688 |
aaacgtggctgcaaggtgtgatagatgtttcacagtggctgaaataattgattgtgaagaacctatactac |
25812618 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 57 - 227
Target Start/End: Complemental strand, 25800036 - 25799866
Alignment:
| Q |
57 |
caatgactcatgatgaagttagaagaattgattcttcatttttggatagatattagatactatactctataatatttat---agtacatgacaagttgga |
153 |
Q |
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||||||| |||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| |
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| T |
25800036 |
caatgacccatgatgaagtttgaagaactgattcttcatttttggatagatattagatactatactcttaaatatttatagtagtacatgacaagttggt |
25799937 |
T |
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| Q |
154 |
ccttttgaggtcattggatttttctt-gcaaagtaattaccatcacacaaattcatatgaaggtatcaaacgtgg |
227 |
Q |
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| T |
25799936 |
ccttttgaggtcatctcatttttcttagcaaagcatttaccat--cacaaattc--atgaaggtatcaaatgtgg |
25799866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0026 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: scaffold0026
Description:
Target: scaffold0026; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 57 - 227
Target Start/End: Original strand, 114634 - 114804
Alignment:
| Q |
57 |
caatgactcatgatgaagttagaagaattgattcttcatttttggatagatattagatactatactctataatattta---tagtacatgacaagttgga |
153 |
Q |
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||||||| |||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| |
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| T |
114634 |
caatgacccatgatgaagtttgaagaactgattcttcatttttggatagatattagatactatactcttaaatatttatagtagtacatgacaagttggt |
114733 |
T |
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| Q |
154 |
ccttttgaggtcattggatttttctt-gcaaagtaattaccatcacacaaattcatatgaaggtatcaaacgtgg |
227 |
Q |
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|||||||||||||| ||||||||| |||||| | ||||||| ||||||||| |||||||||||||| |||| |
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| T |
114734 |
ccttttgaggtcatcacatttttcttagcaaagcatttaccat--cacaaattc--atgaaggtatcaaatgtgg |
114804 |
T |
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