View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12658_low_21 (Length: 275)
Name: NF12658_low_21
Description: NF12658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12658_low_21 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 255
Target Start/End: Complemental strand, 29122360 - 29122106
Alignment:
| Q |
1 |
gacctgacgactaagccatccttcatattcatcctcaagtgcctgtgggagatcatagttgtgtagtgtgacatgtggttggattcctgcaaatgtgaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29122360 |
gacctgacgactaagccatccttcatattcatcctcaagtgcctgtgggagatcatagttgtgtagtgtgacatgtggttggattcctgcaaatgtgaaa |
29122261 |
T |
|
| Q |
101 |
gacttgtattatattagtttaagaaacaaaatcgatttcactctactgtttttgaaatcttaattaaggcatgtcttatatgagccgtatctaaccattt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
29122260 |
gacttgtattatattagtttaagaaacaaaatcgatttcactctactgtttttgaaatcttaattaaggcatgtcttatatgagtcgtatctaaccattt |
29122161 |
T |
|
| Q |
201 |
ctaatgagttcattgatgagattgttgtaatattgcaatcccttcgggttgactg |
255 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29122160 |
ctaatgagttcattgatgagattgttgtaatattgcaatcccttcgggttgactg |
29122106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 152; Significance: 1e-80; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 39642003 - 39641737
Alignment:
| Q |
1 |
gacctgacgactaagccatccttcatattcatcctcaagtgcctgtgggagatcatagttgtgtagtgtgacatgtggttggattcctgcaaatgtgaaa |
100 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| |
|
|
| T |
39642003 |
gacctcacgactaagccatccttcatattcatcctcaagtgcctgtgggagatcatagttgtgtagtgtgacatgtggttggattcctacaaatggaaaa |
39641904 |
T |
|
| Q |
101 |
gacttgtattatattagtttaagaaacaaaatcgatttcactctactgtttttgaaatcttaattaaggcatgtcttat----------atg----agc- |
185 |
Q |
| |
|
|||||||||||||| | || |||||||| ||| ||||||||| |||||||||||||||||| ||||||||||||||||| ||| ||| |
|
|
| T |
39641903 |
gacttgtattatatcacttgaagaaacagaattgatttcact-tactgtttttgaaatcttgattaaggcatgtcttatcttgcagcaaatgaagaagct |
39641805 |
T |
|
| Q |
186 |
cgtatctaaccatttctaatgagttcattgatgagattgttgtaatattgcaatcccttcgggttgac |
253 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| |
|
|
| T |
39641804 |
cgtatctaaccatttctaatgagttcattgatgagattgttgtagtactgcaatcccttcgggttgac |
39641737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 39631217 - 39630953
Alignment:
| Q |
1 |
gacctgacgactaagccatccttcatattcatcctcaagtgcctgtgggagatcatagttgtgtagtgtgacatgtggttggattcctgcaaatgtgaaa |
100 |
Q |
| |
|
||||| |||||||||||||||| | ||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||| ||| |||| |
|
|
| T |
39631217 |
gacctcacgactaagccatcctccgtattcatcctcaagtgcttgtgggaggtcatagttgtgcagtgtgacatgtggttggattcctgcatatgggaaa |
39631118 |
T |
|
| Q |
101 |
gacttgtattatattagtttaagaaacaaaatcgatttcactctactgtttttgaaatcttaattaaggcatgtcttat----------atg-----agc |
185 |
Q |
| |
|
|||| |||||||| | || |||||||| ||| ||||||| |||||||||||||||||||||||||||||||||||||| ||| | |
|
|
| T |
39631117 |
gact--tattatatcacttgaagaaacagaattgatttcattctactgtttttgaaatcttaattaaggcatgtcttatcttgcaacaaatgaagaaact |
39631020 |
T |
|
| Q |
186 |
cgtatctaaccatttctaatgagttcattgatgagattgttgtaatattgcaatcccttcgggttga |
252 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| || || ||||||||||||||||||| |
|
|
| T |
39631019 |
cgtatctaaccatttctaatgagttcattgatgagattgttatagtactgcaatcccttcgggttga |
39630953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 11 - 88
Target Start/End: Original strand, 25328366 - 25328443
Alignment:
| Q |
11 |
ctaagccatccttcatattcatcctcaagtgcctgtgggagatcatagttgtgtagtgtgacatgtggttggattcct |
88 |
Q |
| |
|
|||| |||||||||||| ||||||||||||| |||||| ||||| ||| ||| | ||| ||||||| || ||||||| |
|
|
| T |
25328366 |
ctaacccatccttcatactcatcctcaagtgactgtggtagatcccagtggtgcaatgtaacatgtgcttcgattcct |
25328443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 207 - 244
Target Start/End: Original strand, 5220104 - 5220141
Alignment:
| Q |
207 |
agttcattgatgagattgttgtaatattgcaatccctt |
244 |
Q |
| |
|
|||||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
5220104 |
agttcattgatgaggttgttgtaatactgcaatccctt |
5220141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University