View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12658_low_31 (Length: 237)

Name: NF12658_low_31
Description: NF12658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12658_low_31
NF12658_low_31
[»] chr4 (6 HSPs)
chr4 (159-221)||(29462761-29462823)
chr4 (1-91)||(29462891-29462981)
chr4 (159-208)||(52341574-52341623)
chr4 (159-206)||(35675277-35675324)
chr4 (159-200)||(1457622-1457663)
chr4 (159-207)||(966556-966604)
[»] chr2 (4 HSPs)
chr2 (159-217)||(2136400-2136458)
chr2 (159-219)||(41890198-41890258)
chr2 (48-86)||(25971-26009)
chr2 (48-86)||(21362503-21362541)
[»] chr1 (1 HSPs)
chr1 (159-213)||(51424125-51424179)
[»] chr7 (1 HSPs)
chr7 (159-206)||(16082519-16082566)
[»] chr8 (2 HSPs)
chr8 (159-217)||(6396360-6396418)
chr8 (162-199)||(35455250-35455287)
[»] chr5 (2 HSPs)
chr5 (159-201)||(3639161-3639203)
chr5 (159-208)||(20184635-20184684)


Alignment Details
Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 159 - 221
Target Start/End: Complemental strand, 29462823 - 29462761
Alignment:
Q  159 ttgttgaatccaatgcaaacatattaattttgatttccttaacaagtgtcctaagggcactag 221  Q
    ||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||    
T  29462823 ttgttgaatccaatgtaaacatattaatttcgatttccttaacaagtgtcctaagggcactag 29462761  T

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Target: chr4; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 29462981 - 29462891
Alignment:
Q  1 cgtcataaattataaatcgctttgagnnnnnnnttgtcttaaattataggaaaatgctaaagagtatccttggggcattgtttaagaggat 91  Q
    ||||||||||||||||| ||||||||       ||||||||||||||||| ||||||||||||||| | || |||||||||||||||||||    
T  29462981 cgtcataaattataaattgctttgagaaaaaaattgtcttaaattatagggaaatgctaaagagtacctttagggcattgtttaagaggat 29462891  T

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Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 159 - 208
Target Start/End: Complemental strand, 52341623 - 52341574
Alignment:
Q  159 ttgttgaatccaatgcaaacatattaattttgatttccttaacaagtgtc 208  Q
    ||||||||||||||||||||||| |||||||| |||||||||||||||||    
T  52341623 ttgttgaatccaatgcaaacatactaattttggtttccttaacaagtgtc 52341574  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 159 - 206
Target Start/End: Original strand, 35675277 - 35675324
Alignment:
Q  159 ttgttgaatccaatgcaaacatattaattttgatttccttaacaagtg 206  Q
    ||||||||| ||||||||||||| || ||||||||| |||||||||||    
T  35675277 ttgttgaattcaatgcaaacatactacttttgattttcttaacaagtg 35675324  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 159 - 200
Target Start/End: Original strand, 1457622 - 1457663
Alignment:
Q  159 ttgttgaatccaatgcaaacatattaattttgatttccttaa 200  Q
    ||||||||| |||||||||| ||||| |||||||||||||||    
T  1457622 ttgttgaattcaatgcaaacttattacttttgatttccttaa 1457663  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 207
Target Start/End: Complemental strand, 966604 - 966556
Alignment:
Q  159 ttgttgaatccaatgcaaacatattaattttgatttccttaacaagtgt 207  Q
    ||||||||||||||| |||  || || ||||||||||||||||||||||    
T  966604 ttgttgaatccaatgaaaaactactacttttgatttccttaacaagtgt 966556  T

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Target: chr2 (Bit Score: 35; Significance: 0.00000000008; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 159 - 217
Target Start/End: Complemental strand, 2136458 - 2136400
Alignment:
Q  159 ttgttgaatccaatgcaaacatattaattttgatttccttaacaagtgtcctaagggca 217  Q
    ||||||||| |||| ||||| || |||||||| ||||||||||||||| ||||||||||    
T  2136458 ttgttgaatacaatacaaacctactaattttggtttccttaacaagtgccctaagggca 2136400  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 219
Target Start/End: Original strand, 41890198 - 41890258
Alignment:
Q  159 ttgttgaatccaatgcaaacatattaattttgatttccttaacaagtgtcctaagggcact 219  Q
    |||||||||||||||||||| || || ||||| |||||||||||| || ||| ||||||||    
T  41890198 ttgttgaatccaatgcaaacctactacttttggtttccttaacaaatgcccttagggcact 41890258  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 86
Target Start/End: Complemental strand, 26009 - 25971
Alignment:
Q  48 aggaaaatgctaaagagtatccttggggcattgtttaag 86  Q
    ||||||||| ||||||||| |||||||||||||||||||    
T  26009 aggaaaatgttaaagagtacccttggggcattgtttaag 25971  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 86
Target Start/End: Complemental strand, 21362541 - 21362503
Alignment:
Q  48 aggaaaatgctaaagagtatccttggggcattgtttaag 86  Q
    ||||||||| ||||||||| |||||||||||||||||||    
T  21362541 aggaaaatgttaaagagtacccttggggcattgtttaag 21362503  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 159 - 213
Target Start/End: Complemental strand, 51424179 - 51424125
Alignment:
Q  159 ttgttgaatccaatgcaaacatattaattttgatttccttaacaagtgtcctaag 213  Q
    ||||||||||||||| |||||||||| ||||| |||| |||||||||||| ||||    
T  51424179 ttgttgaatccaatgtaaacatattacttttggtttctttaacaagtgtcataag 51424125  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 159 - 206
Target Start/End: Original strand, 16082519 - 16082566
Alignment:
Q  159 ttgttgaatccaatgcaaacatattaattttgatttccttaacaagtg 206  Q
    ||||||||||||||||||||||| || |||||  ||||||||||||||    
T  16082519 ttgttgaatccaatgcaaacatactacttttggattccttaacaagtg 16082566  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 217
Target Start/End: Original strand, 6396360 - 6396418
Alignment:
Q  159 ttgttgaatccaatgcaaacatattaattttgatttccttaacaagtgtcctaagggca 217  Q
    |||||||||| ||| |||| ||| ||||||||||||| |||||||||||| ||| ||||    
T  6396360 ttgttgaatctaatacaaatatactaattttgatttctttaacaagtgtcttaaaggca 6396418  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 162 - 199
Target Start/End: Complemental strand, 35455287 - 35455250
Alignment:
Q  162 ttgaatccaatgcaaacatattaattttgatttcctta 199  Q
    ||||||||||| |||||||| |||||||||||||||||    
T  35455287 ttgaatccaatacaaacatactaattttgatttcctta 35455250  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 201
Target Start/End: Original strand, 3639161 - 3639203
Alignment:
Q  159 ttgttgaatccaatgcaaacatattaattttgatttccttaac 201  Q
    |||||||| ||||||||||||||||| |||||| |||||||||    
T  3639161 ttgttgaaaccaatgcaaacatattacttttgacttccttaac 3639203  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 159 - 208
Target Start/End: Original strand, 20184635 - 20184684
Alignment:
Q  159 ttgttgaatccaatgcaaacatattaattttgatttccttaacaagtgtc 208  Q
    |||||||||| ||| ||| ||||||| |||||||||||||||||| ||||    
T  20184635 ttgttgaatctaatacaatcatattacttttgatttccttaacaaatgtc 20184684  T

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