View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12658_low_32 (Length: 228)
Name: NF12658_low_32
Description: NF12658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12658_low_32 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 61; Significance: 2e-26; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 168 - 228
Target Start/End: Complemental strand, 43143256 - 43143196
Alignment:
| Q |
168 |
gatgcagatattggcagtcagcaggtgagagagaaggagagaatccaatgatgacgccact |
228 |
Q |
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| T |
43143256 |
gatgcagatattggcagtcagcaggtgagagagaaggagagaatccaatgatgacgccact |
43143196 |
T |
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Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 42 - 105
Target Start/End: Complemental strand, 43143399 - 43143336
Alignment:
| Q |
42 |
gaagaaaccaagaaaggagnnnnnnngaaatttataaccagagaacaagaaccagaacagtatg |
105 |
Q |
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| T |
43143399 |
gaagaaaccaagaaaggagaaaaaaagaaatttataaccagagaacaagaaccagaacagtatg |
43143336 |
T |
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