View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12658_low_36 (Length: 215)

Name: NF12658_low_36
Description: NF12658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12658_low_36
NF12658_low_36
[»] chr2 (37 HSPs)
chr2 (1-200)||(31056108-31056307)
chr2 (1-194)||(14698848-14699040)
chr2 (1-194)||(21630007-21630203)
chr2 (1-194)||(33118200-33118393)
chr2 (1-194)||(17865267-17865463)
chr2 (1-194)||(39482995-39483191)
chr2 (1-200)||(8040124-8040328)
chr2 (1-194)||(33528463-33528654)
chr2 (7-200)||(34682166-34682361)
chr2 (1-194)||(20522284-20522480)
chr2 (1-194)||(13569392-13569587)
chr2 (1-194)||(34388922-34389109)
chr2 (1-194)||(40014989-40015183)
chr2 (1-186)||(10707099-10707285)
chr2 (1-186)||(8389996-8390183)
chr2 (1-192)||(2869533-2869726)
chr2 (1-194)||(23078310-23078503)
chr2 (6-194)||(36757601-36757790)
chr2 (7-194)||(10445306-10445471)
chr2 (1-200)||(2837862-2838063)
chr2 (1-194)||(28259016-28259210)
chr2 (1-186)||(15903737-15903922)
chr2 (87-194)||(35397661-35397767)
chr2 (1-146)||(42039555-42039702)
chr2 (88-194)||(3278152-3278259)
chr2 (30-193)||(28770613-28770778)
chr2 (135-194)||(40739033-40739092)
chr2 (30-194)||(18674239-18674405)
chr2 (3-123)||(1345451-1345571)
chr2 (139-187)||(3491955-3492003)
chr2 (147-187)||(25409842-25409882)
chr2 (1-52)||(16940191-16940242)
chr2 (1-52)||(17010856-17010907)
chr2 (144-193)||(1344385-1344435)
chr2 (139-187)||(9296243-9296292)
chr2 (102-194)||(41586389-41586482)
chr2 (7-120)||(27149207-27149321)
[»] chr1 (30 HSPs)
chr1 (1-200)||(19072992-19073192)
chr1 (1-200)||(19120882-19121082)
chr1 (4-200)||(40816649-40816844)
chr1 (1-194)||(13598462-13598658)
chr1 (1-194)||(16124353-16124549)
chr1 (1-194)||(29651875-29652071)
chr1 (1-200)||(47703768-47703969)
chr1 (1-194)||(47098664-47098857)
chr1 (1-193)||(9476325-9476519)
chr1 (1-194)||(47102678-47102874)
chr1 (4-194)||(22819496-22819689)
chr1 (6-194)||(3281777-3281965)
chr1 (6-194)||(26644737-26644925)
chr1 (1-194)||(32889503-32889696)
chr1 (7-193)||(21536410-21536596)
chr1 (1-194)||(13604461-13604656)
chr1 (93-186)||(9022753-9022844)
chr1 (104-194)||(27104240-27104330)
chr1 (49-194)||(37069878-37070025)
chr1 (112-189)||(19358685-19358761)
chr1 (112-189)||(19361274-19361350)
chr1 (112-187)||(19379916-19379990)
chr1 (112-187)||(19366152-19366226)
chr1 (87-194)||(11031313-11031420)
chr1 (55-137)||(17345415-17345499)
chr1 (30-147)||(35109423-35109541)
chr1 (139-187)||(24202613-24202661)
chr1 (1-44)||(27104362-27104405)
chr1 (95-181)||(8281477-8281563)
chr1 (30-84)||(11032271-11032324)
[»] chr3 (37 HSPs)
chr3 (1-200)||(25795845-25796044)
chr3 (1-191)||(18552716-18552906)
chr3 (6-194)||(24694994-24695182)
chr3 (1-194)||(8126694-8126888)
chr3 (1-193)||(48438278-48438473)
chr3 (1-194)||(40592610-40592805)
chr3 (1-194)||(1736132-1736328)
chr3 (1-200)||(3715824-3716025)
chr3 (1-194)||(26299052-26299246)
chr3 (1-194)||(36029157-36029351)
chr3 (1-186)||(40844715-40844905)
chr3 (1-194)||(3323519-3323713)
chr3 (1-194)||(3328185-3328379)
chr3 (1-194)||(47923732-47923929)
chr3 (1-194)||(30709617-30709813)
chr3 (1-194)||(35925544-35925736)
chr3 (20-200)||(47649652-47649834)
chr3 (1-194)||(1417319-1417513)
chr3 (1-194)||(8370317-8370509)
chr3 (1-194)||(21711287-21711480)
chr3 (1-193)||(37466355-37466552)
chr3 (1-194)||(16264414-16264607)
chr3 (1-192)||(6794545-6794736)
chr3 (1-200)||(21353626-21353827)
chr3 (50-192)||(25929226-25929370)
chr3 (1-186)||(27974788-27974975)
chr3 (103-194)||(39032382-39032472)
chr3 (49-194)||(27986284-27986431)
chr3 (112-194)||(27453137-27453218)
chr3 (112-194)||(32143500-32143581)
chr3 (112-186)||(33386511-33386584)
chr3 (112-194)||(26928427-26928508)
chr3 (139-187)||(1306153-1306201)
chr3 (102-192)||(5366152-5366244)
chr3 (102-191)||(21156595-21156685)
chr3 (135-186)||(37725874-37725925)
chr3 (3-84)||(4386868-4386948)
[»] chr6 (21 HSPs)
chr6 (1-200)||(21801177-21801377)
chr6 (1-186)||(31979577-31979762)
chr6 (1-194)||(5572082-5572274)
chr6 (1-200)||(4630018-4630217)
chr6 (1-191)||(18232909-18233101)
chr6 (1-174)||(10077027-10077198)
chr6 (1-192)||(24435812-24436004)
chr6 (1-191)||(22963763-22963954)
chr6 (1-191)||(23824439-23824630)
chr6 (1-186)||(31086321-31086506)
chr6 (21-194)||(31936660-31936833)
chr6 (55-200)||(14521790-14521938)
chr6 (21-194)||(5017335-5017493)
chr6 (1-194)||(5757317-5757511)
chr6 (1-186)||(21356100-21356287)
chr6 (103-186)||(31076783-31076866)
chr6 (112-194)||(22709187-22709268)
chr6 (55-193)||(33721398-33721539)
chr6 (25-193)||(99244-99413)
chr6 (97-186)||(5385756-5385845)
chr6 (139-187)||(5674611-5674660)
[»] chr8 (23 HSPs)
chr8 (1-200)||(6127285-6127487)
chr8 (1-200)||(26403062-26403263)
chr8 (21-194)||(4696447-4696620)
chr8 (6-194)||(5702319-5702511)
chr8 (1-194)||(23799415-23799610)
chr8 (1-192)||(3051184-3051376)
chr8 (1-182)||(19752245-19752427)
chr8 (1-194)||(4456092-4456286)
chr8 (1-194)||(7412405-7412598)
chr8 (1-191)||(7493015-7493206)
chr8 (87-193)||(28307713-28307819)
chr8 (1-194)||(5990400-5990594)
chr8 (1-191)||(19175596-19175787)
chr8 (129-194)||(9054259-9054324)
chr8 (1-122)||(9054748-9054870)
chr8 (112-187)||(26288069-26288143)
chr8 (112-187)||(26301326-26301400)
chr8 (112-187)||(26313320-26313394)
chr8 (94-182)||(13204634-13204722)
chr8 (139-187)||(31071073-31071121)
chr8 (139-187)||(1261798-1261846)
chr8 (10-84)||(30291620-30291695)
chr8 (63-123)||(31513242-31513303)
[»] chr7 (29 HSPs)
chr7 (1-194)||(2647536-2647729)
chr7 (1-194)||(4796507-4796700)
chr7 (1-182)||(56011-56195)
chr7 (1-186)||(33332297-33332483)
chr7 (1-194)||(49091725-49091921)
chr7 (1-200)||(29159867-29160069)
chr7 (1-194)||(23402852-23403046)
chr7 (1-194)||(20284153-20284347)
chr7 (1-192)||(46516146-46516343)
chr7 (1-194)||(35960880-35961075)
chr7 (1-194)||(2580454-2580648)
chr7 (1-194)||(9189846-9190041)
chr7 (11-194)||(9235421-9235605)
chr7 (49-194)||(9185013-9185160)
chr7 (1-193)||(5817110-5817303)
chr7 (1-195)||(21983348-21983545)
chr7 (1-194)||(3047319-3047512)
chr7 (1-194)||(2479400-2479594)
chr7 (6-194)||(21988975-21989166)
chr7 (31-193)||(47263759-47263923)
chr7 (139-187)||(21640013-21640061)
chr7 (139-187)||(21646211-21646259)
chr7 (139-187)||(18413843-18413891)
chr7 (143-194)||(44847964-44848015)
chr7 (139-187)||(18408967-18409015)
chr7 (1-84)||(28617176-28617258)
chr7 (1-150)||(44848567-44848717)
chr7 (55-122)||(45685656-45685725)
chr7 (139-187)||(1533285-1533334)
[»] scaffold0006 (3 HSPs)
scaffold0006 (1-194)||(5747-5943)
scaffold0006 (1-194)||(2556-2752)
scaffold0006 (1-194)||(133118-133313)
[»] chr5 (25 HSPs)
chr5 (1-200)||(10281815-10282016)
chr5 (1-194)||(19588810-19589003)
chr5 (1-200)||(3880363-3880564)
chr5 (1-194)||(11181671-11181865)
chr5 (1-194)||(28832323-28832515)
chr5 (1-177)||(42127266-42127443)
chr5 (1-186)||(17003806-17003993)
chr5 (7-194)||(11916811-11916999)
chr5 (1-186)||(31300442-31300629)
chr5 (1-194)||(12084016-12084208)
chr5 (1-194)||(14520294-14520488)
chr5 (93-194)||(24553366-24553467)
chr5 (1-194)||(9353171-9353365)
chr5 (5-191)||(7160746-7160932)
chr5 (1-182)||(33030789-33030973)
chr5 (1-194)||(15464596-15464792)
chr5 (1-165)||(2630295-2630460)
chr5 (1-194)||(36932187-36932383)
chr5 (3-162)||(6741918-6742076)
chr5 (112-187)||(38219577-38219651)
chr5 (135-186)||(42127217-42127268)
chr5 (134-187)||(35387862-35387915)
chr5 (102-191)||(5611308-5611398)
chr5 (139-187)||(24136053-24136102)
chr5 (113-178)||(30900043-30900108)
[»] chr4 (31 HSPs)
chr4 (1-194)||(10047443-10047639)
chr4 (1-193)||(42599414-42599605)
chr4 (1-194)||(16623132-16623326)
chr4 (1-194)||(6743254-6743448)
chr4 (1-200)||(24333873-24334075)
chr4 (21-194)||(5269039-5269215)
chr4 (21-194)||(25861872-25862046)
chr4 (1-194)||(3777613-3777807)
chr4 (8-182)||(38152289-38152465)
chr4 (1-194)||(5112301-5112495)
chr4 (1-192)||(39774146-39774338)
chr4 (1-181)||(54867247-54867427)
chr4 (1-194)||(36315069-36315262)
chr4 (1-194)||(36329278-36329471)
chr4 (1-190)||(18377423-18377613)
chr4 (68-194)||(16628711-16628838)
chr4 (103-200)||(3793913-3794010)
chr4 (1-194)||(5396510-5396704)
chr4 (1-191)||(5143323-5143515)
chr4 (6-192)||(5147746-5147934)
chr4 (1-185)||(1983148-1983333)
chr4 (1-98)||(3796455-3796552)
chr4 (21-194)||(8689335-8689509)
chr4 (30-194)||(37781955-37782122)
chr4 (1-194)||(31985472-31985667)
chr4 (1-63)||(16630651-16630713)
chr4 (30-181)||(34670517-34670669)
chr4 (112-187)||(28468382-28468456)
chr4 (87-139)||(39593878-39593930)
chr4 (111-181)||(873370-873440)
chr4 (1-37)||(39246058-39246094)
[»] scaffold0148 (1 HSPs)
scaffold0148 (1-200)||(10793-10995)
[»] scaffold0176 (1 HSPs)
scaffold0176 (6-191)||(17332-17506)
[»] scaffold0036 (1 HSPs)
scaffold0036 (6-194)||(85752-85941)
[»] scaffold0087 (2 HSPs)
scaffold0087 (1-194)||(36671-36865)
scaffold0087 (1-194)||(43800-43994)
[»] scaffold0078 (1 HSPs)
scaffold0078 (68-194)||(23662-23790)
[»] scaffold0140 (1 HSPs)
scaffold0140 (1-194)||(8256-8452)
[»] scaffold0098 (1 HSPs)
scaffold0098 (112-186)||(45375-45448)
[»] scaffold0188 (2 HSPs)
scaffold0188 (112-187)||(17796-17870)
scaffold0188 (112-187)||(23889-23963)
[»] scaffold0016 (1 HSPs)
scaffold0016 (30-195)||(102331-102498)
[»] scaffold0002 (1 HSPs)
scaffold0002 (104-194)||(14852-14941)


Alignment Details
Target: chr2 (Bit Score: 160; Significance: 2e-85; HSPs: 37)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 31056108 - 31056307
Alignment:
Q  1 actaagatgaaagtgttacaaaagagttgcaagaaattagcttataaccttacaaaagaacaaaacataatttctacccattttgtgtcactcacactct 100  Q
    |||||||||||||||||||||||||||| ||| |||||||||||||| ||||||||||||||| || |||||||||||||||||||||||| ||||||||    
T  31056108 actaagatgaaagtgttacaaaagagttacaataaattagcttataagcttacaaaagaacaagacctaatttctacccattttgtgtcacccacactct 31056207  T
Q  101 caatgaatcctaagagaaaacacacaaggaagctttttgatccttccaatggtgaaatctcactacctaaggtgtttacaatgttttccaaccctcaaga 200  Q
    |||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| |||||||||||||    
T  31056208 caatgaatcctaagagaaaacacaaaaggaagctttttgatcctttcaatggtgaaatctcactacccaaggtgtttacaatgtttcccaaccctcaaga 31056307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 14699040 - 14698848
Alignment:
Q  1 actaagatgaaagtgttacaaaagagttgcaagaaattagcttataaccttacaaaagaacaaaacataatttctacccattttgtgtcactcacactct 100  Q
    |||| |||||||| |||||||||||||| |||||||||||||||||| |||||| |||||||| || |||||||||||||||||||||||| ||||||||    
T  14699040 actatgatgaaag-gttacaaaagagttacaagaaattagcttataagcttacacaagaacaagacctaatttctacccattttgtgtcacccacactct 14698942  T
Q  101 caatgaatcctaagagaaaacacacaaggaagctttttgatccttccaatggtgaaatctcactacctaaggtgtttacaatgttttccaaccc 194  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| |||||||    
T  14698941 caatgaatcctaagagaaaacacaaaaggaagctttttgatccttccaatagtgaaatctcactacccaaggtgtttacaatgtttcccaaccc 14698848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 139; E-Value: 6e-73
Query Start/End: Original strand, 1 - 194
Target Start/End: Original strand, 21630007 - 21630203
Alignment:
Q  1 actaagatgaaagtgttacaaaagagttgcaagaaattagcttataaccttacaaaagaacaaaacataatttctacccattttgtgtcactcacactct 100  Q
    |||| ||||||||||||||||||||||| ||||||||||| |||||| |||||| |||||||| || |||||||||||||||||||||||| ||||||||    
T  21630007 actatgatgaaagtgttacaaaagagttacaagaaattagtttataagcttacacaagaacaagacttaatttctacccattttgtgtcacccacactct 21630106  T
Q  101 caat---gaatcctaagagaaaacacacaaggaagctttttgatccttccaatggtgaaatctcactacctaaggtgtttacaatgttttccaaccc 194  Q
    ||||   |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||    
T  21630107 caataatgaatcctaagagaaaacacaaaaggaagctttttgatccttccaatggtgaaatctcactacccaaggtgtttacaatgtttcccaaccc 21630203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 194
Target Start/End: Original strand, 33118200 - 33118393
Alignment:
Q  1 actaagatgaaagtgttacaaaagagttgcaagaaattagcttataaccttacaaaagaacaaaacataatttctacccattttgtgtcactcacactct 100  Q
    |||| |||||||| ||||||||| |||| |||||||||||||||||| |||||| |||||||| || |||||||||||||||||||||||| | ||||||    
T  33118200 actatgatgaaagagttacaaaatagttacaagaaattagcttataagcttacacaagaacaagacttaatttctacccattttgtgtcaccctcactct 33118299  T
Q  101 caatgaatcctaagagaaaacacacaaggaagctttttgatccttccaatggtgaaatctcactacctaaggtgtttacaatgttttccaaccc 194  Q
    ||||||||| |||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||  |||||||    
T  33118300 caatgaatcttaagagaaaacacaaaaggaagctttttgatccttccaatggcgaaatctcactacccaaggtgtttacaatgttccccaaccc 33118393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 1 - 194
Target Start/End: Original strand, 17865267 - 17865463
Alignment:
Q  1 actaagatgaaagtgttacaaaagagttgcaagaaattagcttataaccttacaaaagaacaaaacataatttctacccattttgtgtcactcacactct 100  Q
    |||| ||||||||||||||||||||||| |||||||||||||||||| |||||| |||||||| |||||||||||||| ||||| |||||  ||||||||    
T  17865267 actatgatgaaagtgttacaaaagagttacaagaaattagcttataagcttacacaagaacaagacataatttctacctattttatgtcatccacactct 17865366  T
Q  101 caat---gaatcctaagagaaaacacacaaggaagctttttgatccttccaatggtgaaatctcactacctaaggtgtttacaatgttttccaaccc 194  Q
    ||||   |||||||||||||||||||| ||||||||||||||||||||| | | |||||||||||||||| |||||||||||||||||| |||||||    
T  17865367 caataatgaatcctaagagaaaacacaaaaggaagctttttgatccttctatttgtgaaatctcactacccaaggtgtttacaatgtttcccaaccc 17865463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 1 - 194
Target Start/End: Original strand, 39482995 - 39483191
Alignment:
Q  1 actaagatgaaagtgttacaaaagagttgcaagaaattagcttataaccttacaaaagaacaaaacataatttctacccattttgtgtcactcacactct 100  Q
    |||| ||||||| ||||||||||||||| |||||||||||||||||| |||||| |||||||| || ||||||||||||||||| |||||| ||||||||    
T  39482995 actatgatgaaaatgttacaaaagagttacaagaaattagcttataagcttacacaagaacaagacctaatttctacccattttatgtcacccacactct 39483094  T
Q  101 caat---gaatcctaagagaaaacacacaaggaagctttttgatccttccaatggtgaaatctcactacctaaggtgtttacaatgttttccaaccc 194  Q
    ||||   |||||||||||||||||||| ||||||| ||||||||| |||||||||||||||||||||||| |||||||||||||| ||| |||||||    
T  39483095 caataatgaatcctaagagaaaacacaaaaggaagttttttgatcattccaatggtgaaatctcactacccaaggtgtttacaatatttcccaaccc 39483191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 8040124 - 8040328
Alignment:
Q  1 actaagatgaaagtgttacaaaagag--ttgcaagaaattagcttataaccttacaaaagaacaaaacataatttctacccattttgtgtcactcacact 98  Q
    |||| |||||||||||||||||||||  || ||||||||||||||| || |||||| |||||||| || |||||||||||||||||||||||| ||| ||    
T  8040124 actatgatgaaagtgttacaaaagagagttacaagaaattagcttacaagcttacacaagaacaagacctaatttctacccattttgtgtcacccactct 8040223  T
Q  99 ctcaat--gaatcctaagagaaaa-cacacaaggaagctttttgatccttccaatggtgaaatctcactacctaaggtgtttacaatgttttccaaccct 195  Q
    | ||||  |||||||||||||||| || | |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||    
T  8040224 cacaatatgaatcctaagagaaaaacataaaaggaagctttttgatccttccaatggtgaaatctcactacccaaggtgtttacaatgtttcccaaccct 8040323  T
Q  196 caaga 200  Q
    |||||    
T  8040324 caaga 8040328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 33528654 - 33528463
Alignment:
Q  1 actaagatgaaagtgttacaaaagagttgcaagaaattagcttataaccttacaaaagaacaaaacataatttctacccattttgtgtcactcacactct 100  Q
    |||| ||||||||||||||||||||||| |||||||||||||||||| ||     |||||||| || |||||||||||||||||||||||| || |||||    
T  33528654 actatgatgaaagtgttacaaaagagttacaagaaattagcttataagct-----aagaacaagacctaatttctacccattttgtgtcacccaaactct 33528560  T
Q  101 caat---gaatcctaagagaaaacacacaaggaagctttttgatccttccaatggtgaaatctcactacctaaggtgtttacaatgttttccaaccc 194  Q
    ||||   |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| |||||||    
T  33528559 caataatgaatcctaagagaaaacacaaaaggaagctttttgatccttccaatggtgaaatctcactacccaatgtgtttacaatgtttcccaaccc 33528463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 7 - 200
Target Start/End: Complemental strand, 34682361 - 34682166
Alignment:
Q  7 atgaaagtgttacaaaagagttgcaagaaattagcttataaccttacaaaagaacaaaacataatttctacccattttgtgtcactcacactctcaa--t 104  Q
    |||||||||||||||||||||| ||||||||||||||| |  |||||| |||||||| || |||||||||||||||||||||||| ||| ||| |||  |    
T  34682361 atgaaagtgttacaaaagagttacaagaaattagcttacaggcttacacaagaacaagacttaatttctacccattttgtgtcacccactctcacaaggt 34682262  T
Q  105 gaatcctaagagaaaacacacaaggaagctttttgatccttccaatggtgaaatctcactacctaaggtgtttacaatgttttccaaccctcaaga 200  Q
    |||||||||||||||||||| |||||| | |||||||||||| | |||||||||||||||||| |||||||||||||||||||||||| |||||||    
T  34682261 gaatcctaagagaaaacacaaaaggaaacattttgatccttcaagtggtgaaatctcactacccaaggtgtttacaatgttttccaactctcaaga 34682166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 1 - 194
Target Start/End: Original strand, 20522284 - 20522480
Alignment:
Q  1 actaagatgaaagtgttacaaaagagttgcaagaaattagcttataaccttacaaaagaacaaaacataatttctacccattttgtgtcactcacactct 100  Q
    |||| ||||||||||||||||||| ||| ||||||||||| |||||| ||||||||||||||| || |||||||||||||||||||||||| ||||||||    
T  20522284 actatgatgaaagtgttacaaaagggttacaagaaattagattataagcttacaaaagaacaagacttaatttctacccattttgtgtcacccacactct 20522383  T
Q  101 c---aatgaatcctaagagaaaacacacaaggaagctttttgatccttccaatggtgaaatctcactacctaaggtgtttacaatgttttccaaccc 194  Q
    |   ||||| |||||||| |||||||| ||||||||||||||||| ||| |||||||||||||||||||| ||| ||||||||||| || |||||||    
T  20522384 caataatgagtcctaagaaaaaacacaaaaggaagctttttgatcattcaaatggtgaaatctcactacccaagttgtttacaatgcttcccaaccc 20522480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 194
Target Start/End: Original strand, 13569392 - 13569587
Alignment:
Q  1 actaagatgaaagtgttacaaaagagttgcaagaaattagcttataaccttacaaaagaacaaaacataatttctacccattttgtgtcactcacactct 100  Q
    |||| ||||||||||||||||||||||| ||||||||||||||||||  ||||| |||||||| || |||||||||||| || | |||||| ||| |||     
T  13569392 actatgatgaaagtgttacaaaagagttacaagaaattagcttataagtttacacaagaacaagacctaatttctaccctttgtttgtcacccactctca 13569491  T
Q  101 caat--gaatcctaagagaaaacacacaaggaagctttttgatccttccaatggtgaaatctcactacctaaggtgtttacaatgttttccaaccc 194  Q
    ||||  |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| | |||||||||| ||||||| |||||||    
T  13569492 caatatgaatcctaagagaaaacacaaaaggaagctttttgatccttccaatggtgaaatctcactatccaaggtgtttataatgtttcccaaccc 13569587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 1 - 194
Target Start/End: Original strand, 34388922 - 34389109
Alignment:
Q  1 actaagatgaaagtgttacaaaagagttgcaagaaattagcttataaccttacaaaagaacaaaacataatttctacccattttgtgtcactcacactct 100  Q
    |||| ||||||||||||||||||||||| |||||||||||||||        || |||||||| || |||||||||||||||||||||||| ||| |||     
T  34388922 actatgatgaaagtgttacaaaagagttacaagaaattagctta--------cacaagaacaagacctaatttctacccattttgtgtcacccactctca 34389013  T
Q  101 caat--gaatcctaagagaaaacacacaaggaagctttttgatccttccaatggtgaaatctcactacctaaggtgtttacaatgttttccaaccc 194  Q
    ||||  |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||    
T  34389014 caatatgaatcctaagagaaaacacaaaaggaagctttttgatccttccaatggtgaaatctcactacccaaggtgtttacaatgtttcccaaccc 34389109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 1 - 194
Target Start/End: Original strand, 40014989 - 40015183
Alignment:
Q  1 actaagatgaaagtgttacaaaagagttgcaagaaattagcttataaccttacaaaagaacaaaacataatttctacccattttg-tgtcactcacactc 99  Q
    ||||||||||||||| |||||| ||||||| ||||||||||||| || || |||||||||||| || |||||||||| ||||||  |||||| |||||||    
T  40014989 actaagatgaaagtgatacaaatgagttgcgagaaattagcttaaaaactcacaaaagaacaagacctaatttctactcattttcatgtcacccacactc 40015088  T
Q  100 tcaatgaatcctaagagaaaacacacaaggaagctttttgatccttccaatggtgaaatctcactacctaaggtgtttacaatgttttccaaccc 194  Q
    ||||| |||||||||| ||| |||| |||||||||||||||||||||||||||||||||||||||| | || ||||||||||||||| |||||||    
T  40015089 tcaataaatcctaagaaaaatcacaaaaggaagctttttgatccttccaatggtgaaatctcactatccaatgtgtttacaatgtttcccaaccc 40015183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 1 - 186
Target Start/End: Complemental strand, 10707285 - 10707099
Alignment:
Q  1 actaagatgaaagtgttacaaaagagttgcaagaaattagcttataaccttacaaaagaacaaaacataatttctacccattttgtgtcactcacactct 100  Q
    |||| ||||||||||||||||||||||| ||||||||||||||| || |||||| |||||||| || |||||||||||||| | ||||||| ||| |||     
T  10707285 actatgatgaaagtgttacaaaagagttacaagaaattagcttacaagcttacacaagaacaagacctaatttctacccatct-gtgtcacccactctca 10707187  T
Q  101 caat--gaatcctaagagaaaacacacaaggaagctttttgatccttccaatggtgaaatctcactacctaaggtgtttacaatgttt 186  Q
    ||||  |||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| |||||| ||||||||||||||||||    
T  10707186 caatatgaatcctaagagaaaacacaaaaggaagctttttgatccttctaatggtgaaatctaactacccaaggtgtttacaatgttt 10707099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 186
Target Start/End: Complemental strand, 8390183 - 8389996
Alignment:
Q  1 actaagatgaaagtgttacaaaagagttgcaagaaattagcttataaccttacaaaagaacaaaacataatttctacccattttgtgtcactcacactct 100  Q
    |||| ||||||||||||| ||||||||| ||||||||||||||| || ||| || |||||||| || |||||||||||||||||||||||| ||| |||     
T  8390183 actatgatgaaagtgttaaaaaagagttacaagaaattagcttacaagcttgcacaagaacaagacctaatttctacccattttgtgtcacccactctca 8390084  T
Q  101 caat--gaatcctaagagaaaacacacaaggaagctttttgatccttccaatggtgaaatctcactacctaaggtgtttacaatgttt 186  Q
    ||||  ||||||||||||||||||||  ||||||||||||||| ||||||||||| ||||||||||| | ||||||||||||||||||    
T  8390083 caatatgaatcctaagagaaaacacaagaggaagctttttgattcttccaatggtaaaatctcactatccaaggtgtttacaatgttt 8389996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 2869726 - 2869533
Alignment:
Q  1 actaagatgaaagtgttacaaaagagttgcaagaaattagcttataaccttacaaaagaacaaaa-cataatttctacccattttgt--gtcactcacac 97  Q
    ||||||||||||||| |||||| ||||| ||||||||||||||| || || ||||| |||||||| | |||||||||||||||||    ||||| |||||    
T  2869726 actaagatgaaagtgatacaaaggagttacaagaaattagcttaaaagctcacaaa-gaacaaaaacctaatttctacccatttttcaagtcacccacac 2869628  T
Q  98 tctcaatgaatcctaagagaaaacacacaaggaagctttttgatccttccaatggtgaaatctcactacctaaggtgtttacaatgttttccaac 192  Q
    ||||||||||||||||||||||||||  | |||||||||||||| |||||||||| |||||||||||||| || |||||||||||||||||||||    
T  2869627 tctcaatgaatcctaagagaaaacactaacggaagctttttgattcttccaatggcgaaatctcactacccaatgtgtttacaatgttttccaac 2869533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 23078503 - 23078310
Alignment:
Q  1 actaagatgaaagtgttacaaaagagttgcaagaaattagcttataaccttacaaaagaacaaaacataatttctacccattttgtgtcactcacactct 100  Q
    |||| ||||||||||||| ||| ||||| ||||||| ||||||  || |||||| |||||||| || |||||||||||||||| |||| || ||||||||    
T  23078503 actatgatgaaagtgttagaaa-gagttacaagaaaatagcttgcaagcttacacaagaacaagacttaatttctacccattt-gtgttacccacactct 23078406  T
Q  101 caatga---atcctaagagaaaacacacaaggaagctttttgatccttccaatggtgaaatctcactacctaaggtgtttacaatgttttccaaccc 194  Q
    ||||||   | |||||||||| ||||| |||||||||||| ||||||||||||| ||||||||||||||| |||||||||||||||||| |||||||    
T  23078405 caatgatgaaccctaagagaagacacaaaaggaagctttt-gatccttccaatgatgaaatctcactacccaaggtgtttacaatgtttcccaaccc 23078310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 6 - 194
Target Start/End: Complemental strand, 36757790 - 36757601
Alignment:
Q  6 gatgaaagtgttacaaaagagttgcaagaaattagcttataaccttacaaaagaacaaaacataatttctacccattttgtgtcactcacactctcaatg 105  Q
    |||||||||||| |||| |||||  ||||||  |||||  || |||||| ||||||||||| |||||||||||||||| |||| || ||| |||||||||    
T  36757790 gatgaaagtgtttcaaa-gagttataagaaaaaagctttcaagcttacacaagaacaaaacctaatttctacccattt-gtgttacccactctctcaatg 36757693  T
Q  106 a---atcctaa-gagaaaacacacaaggaagctttttgatccttccaatggtgaaatctcactacctaaggtgtttacaatgttttccaaccc 194  Q
    |   | ||||| ||||| ||||| |||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |||||||    
T  36757692 atgaaccctaaagagaagacacaaaaggaagctttt-gatccttccaatggtgaaatctcactacccaaggtgtttacaatgtttcccaaccc 36757601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 7 - 194
Target Start/End: Complemental strand, 10445471 - 10445306
Alignment:
Q  7 atgaaagtgttacaaaagagttgcaagaaattagcttataaccttacaaaagaacaaaacataatttctacccattttgtgtcactcacactctcaatga 106  Q
    |||||||||||||||||||||| ||||||||||||||| || |||||| |||||||| || |||||||||||||||||||||||| ||| ||| |||       
T  10445471 atgaaagtgttacaaaagagttacaagaaattagcttacaatcttacacaagaacaagacctaatttctacccattttgtgtcacccactctcacaa--- 10445375  T
Q  107 atcctaagagaaaacacacaaggaagctttttgatccttccaatggtgaaatctcactacctaaggtgtttacaatgttttccaaccc 194  Q
                       |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||    
T  10445374 -------------------aaggaagctttttgatccttccaatggtgaaatctcactacccaaggtgtttacaatgtttcccaaccc 10445306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 2838063 - 2837862
Alignment:
Q  1 actaagatgaaagtgttacaaaagagttgcaagaaattagcttataaccttacaaaagaacaaaacataatttctacccattttg--tgtcactcacact 98  Q
    ||||| ||||||||| |||||| ||||| |||||||||||   |  | || ||||| ||||| ||| |||||| | ||||||||   |||||| |||  |    
T  2838063 actaaaatgaaagtgatacaaatgagttacaagaaattagtacaagagctcacaaa-gaacacaacctaatttttgcccatttttcatgtcacccacctt 2837965  T
Q  99 ctcaatgaatcctaagagaaaacacacaaggaagctttttgatccttccaatggtgaaa-tctcactacctaaggtgtttacaatgttttccaaccctca 197  Q
    |||||||||||||||||||||||||  ||||||  ||||| |||||||||||||||||| |||||||| | |||||||||||||||||| ||||||||||    
T  2837964 ctcaatgaatcctaagagaaaacactaaaggaatattttttatccttccaatggtgaaattctcactatccaaggtgtttacaatgtttcccaaccctca 2837865  T
Q  198 aga 200  Q
    |||    
T  2837864 aga 2837862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 28259210 - 28259016
Alignment:
Q  1 actaagatgaaagtgttacaaaagagttgcaagaaattagcttataaccttacaaaagaacaaaacataatttctacccattttgtgtcactcacactct 100  Q
    |||| ||||||||||||||||| ||||| ||||||| ||||||  || |||||| |||||||| |  |||||||||||||||| ||||  | ||| ||||    
T  28259210 actatgatgaaagtgttacaaa-gagttacaagaaaatagcttgcaagcttacacaagaacaagatctaatttctacccattt-gtgtttcccactctct 28259113  T
Q  101 caat---gaatcctaa-gagaaaacacacaaggaagctttttgatccttccaatggtgaaatctcactacctaaggtgtttacaatgttttccaaccc 194  Q
    ||||   ||  ||||| ||||| ||||| |||||||||||| ||||||||||||||||||||||||||||| ||| |||||||||||||| |||||||    
T  28259112 caataatgacccctaaagagaagacacaaaaggaagctttt-gatccttccaatggtgaaatctcactacccaagatgtttacaatgtttcccaaccc 28259016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 1 - 186
Target Start/End: Complemental strand, 15903922 - 15903737
Alignment:
Q  1 actaagatgaaagtgttacaaaagagttgcaagaaattagcttataaccttacaaaagaacaaaacataatttctacccattttgt--gtcactcacact 98  Q
    |||||||| |||||| |||||| | ||| |||||||| |||||| || || ||||| |||||||   |||||||||||||||||    ||||| ||||||    
T  15903922 actaagataaaagtgatacaaaggggttacaagaaat-agcttacaagctcacaaa-gaacaaattctaatttctacccatttttcaagtcacccacact 15903825  T
Q  99 ctcaatgaatcctaagagaaaacacacaaggaagctttttgatccttccaatggtgaaatctcactacctaaggtgtttacaatgttt 186  Q
    |||||||||||||| ||||||||||| ||| || |||||| ||| ||||||||||||||||||| || | || |||||||||||||||    
T  15903824 ctcaatgaatcctatgagaaaacacaaaagaaatcttttttatcattccaatggtgaaatctcattatccaatgtgtttacaatgttt 15903737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 87 - 194
Target Start/End: Original strand, 35397661 - 35397767
Alignment:
Q  87 gtcactcacactctcaatgaatcctaagagaaaacacacaaggaagctttttgatccttccaatggtgaaatctcactacctaaggtgtttacaatgttt 186  Q
    ||||| |||| ||||||||||||||||||||||| |||    |||| || ||||||||||||||||||||||||||||||| |||||  |||||||||||    
T  35397661 gtcacccacaatctcaatgaatcctaagagaaaatacaatttgaag-ttattgatccttccaatggtgaaatctcactacccaaggtaattacaatgttt 35397759  T
Q  187 tccaaccc 194  Q
    ||||||||    
T  35397760 tccaaccc 35397767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 42039702 - 42039555
Alignment:
Q  1 actaagatgaaagtgttacaaaagagttgcaagaaa-ttagcttataaccttacaaaagaacaaaacataatttctacccattttgtgtcactcacactc 99  Q
    |||| |||||||||||||| || ||||| ||||||| |||||||  || |||||| || ||||| || |||||||||||||||||||||||| ||| |||    
T  42039702 actatgatgaaagtgttacgaa-gagttacaagaaaattagcttgcaagcttacacaaaaacaagacctaatttctacccattttgtgtcacccactctc 42039604  T
Q  100 tca--atgaatcctaagagaaaacacacaaggaagctttttgatccttc 146  Q
     ||  |||||||||||||||||||| | ||||||| |||||||| ||||    
T  42039603 acaatatgaatcctaagagaaaacataaaaggaagttttttgattcttc 42039555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 88 - 194
Target Start/End: Original strand, 3278152 - 3278259
Alignment:
Q  88 tcactcacactctcaatgaatcctaagagaaaacacacaaggaagctttttgatccttccaatggtgaaatctcactacctaaggtgtttac-aatgttt 186  Q
    |||||||||||| ||||||| ||||||||||||| |  ||||||| |||||||||| ||| ||  ||||||||||||| | ||||||||||| |||||||    
T  3278152 tcactcacactcacaatgaaccctaagagaaaacgctaaaggaagttttttgatccgtcctataatgaaatctcactatccaaggtgtttacaaatgttt 3278251  T
Q  187 tccaaccc 194  Q
    ||||||||    
T  3278252 tccaaccc 3278259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 30 - 193
Target Start/End: Complemental strand, 28770778 - 28770613
Alignment:
Q  30 caagaaattagcttataaccttacaaaagaacaaaacataatttctacccattttgt--gtcactcacactctcaatgaatcctaagagaaaacacacaa 127  Q
    ||||||||||||||| || || ||||| |||||||   |||||||||||||||||    ||||  ||||||| |||||||||||||||||||||||  ||    
T  28770778 caagaaattagcttaaaagctcacaaa-gaacaaactctaatttctacccatttttcaagtcatacacactcgcaatgaatcctaagagaaaacactaaa 28770680  T
Q  128 ggaagctttttgatccttccaatggtgaaatctcactacctaaggtgtttac-aatgttttccaacc 193  Q
    |||| |||||| |||||||   |  ||| ||||||||||| ||||||||||| ||||||||||||||    
T  28770679 ggaaacttttttatccttcagctaatgagatctcactacccaaggtgtttacaaatgttttccaacc 28770613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 135 - 194
Target Start/End: Original strand, 40739033 - 40739092
Alignment:
Q  135 ttttgatccttccaatggtgaaatctcactacctaaggtgtttacaatgttttccaaccc 194  Q
    |||||||||||||||||||||||||||| |||| |||||||||||||||||| |||||||    
T  40739033 ttttgatccttccaatggtgaaatctcattacccaaggtgtttacaatgtttcccaaccc 40739092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 30 - 194
Target Start/End: Complemental strand, 18674405 - 18674239
Alignment:
Q  30 caagaaattagcttataaccttacaaaagaacaaaacataatttctacccattttgt--gtcactcacactc-tcaatgaatcctaagagaaaacacaca 126  Q
    ||||||||||| ||| || || ||||| ||||||| ||||||||||| |||||||    ||||| ||||||| | |||||||| ||||||||||||   |    
T  18674405 caagaaattagtttaaaagctcacaaa-gaacaaaccataatttctatccatttttcaagtcacccacactcataaatgaatcataagagaaaacattaa 18674307  T
Q  127 aggaagctttttgatccttccaatggtgaaatctcactacctaaggtgtttac-aatgttttccaaccc 194  Q
    ||||||||||||||||||| ||||  |||||||||||| |  ||||||||||| ||||||| |||||||    
T  18674306 aggaagctttttgatcctt-caataatgaaatctcactgctcaaggtgtttacgaatgtttcccaaccc 18674239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 3 - 123
Target Start/End: Complemental strand, 1345571 - 1345451
Alignment:
Q  3 taagatgaaagtgttacaaaagagttgcaagaaattagcttataaccttacaaaagaacaaaacataatttctacccatttt--gtgtcactcacactct 100  Q
    ||||||||||||| |||||| ||||||||||||||||||  || | || |||||  |||| ||| |||||||||||||||||   |||||| | ||||||    
T  1345571 taagatgaaagtgatacaaatgagttgcaagaaattagcacatgagctcacaaa--aacacaacctaatttctacccatttttcatgtcacccccactct 1345474  T
Q  101 caatgaatcctaagagaaaacac 123  Q
    ||||||||| ||| |||||||||    
T  1345473 caatgaatcataaaagaaaacac 1345451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 139 - 187
Target Start/End: Original strand, 3491955 - 3492003
Alignment:
Q  139 gatccttccaatggtgaaatctcactacctaaggtgtttacaatgtttt 187  Q
    |||||||||||||||| |||||||||||| |||||||||||||||||||    
T  3491955 gatccttccaatggtggaatctcactacccaaggtgtttacaatgtttt 3492003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 147 - 187
Target Start/End: Original strand, 25409842 - 25409882
Alignment:
Q  147 caatggtgaaatctcactacctaaggtgtttacaatgtttt 187  Q
    ||||||||||||||||||||| |||||||||||||||||||    
T  25409842 caatggtgaaatctcactacccaaggtgtttacaatgtttt 25409882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 16940242 - 16940191
Alignment:
Q  1 actaagatgaaagtgttacaaaagagttgcaagaaattagcttataacctta 52  Q
    |||| |||||||||||||||||||| || |||||||||||||||||| ||||    
T  16940242 actatgatgaaagtgttacaaaagaattacaagaaattagcttataagctta 16940191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 17010907 - 17010856
Alignment:
Q  1 actaagatgaaagtgttacaaaagagttgcaagaaattagcttataacctta 52  Q
    |||| |||||||||||||||||||| || |||||||||||||||||| ||||    
T  17010907 actatgatgaaagtgttacaaaagaattacaagaaattagcttataagctta 17010856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 193
Target Start/End: Complemental strand, 1344435 - 1344385
Alignment:
Q  144 ttccaatggtgaaat-ctcactacctaaggtgtttacaatgttttccaacc 193  Q
    ||||||||||||||| ||||||||| ||| |||||||||||||| ||||||    
T  1344435 ttccaatggtgaaattctcactaccgaagatgtttacaatgtttcccaacc 1344385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 139 - 187
Target Start/End: Complemental strand, 9296292 - 9296243
Alignment:
Q  139 gatccttccaatggtgaaatc-tcactacctaaggtgtttacaatgtttt 187  Q
    |||||||||||||||||| || |||||||| |||||| ||||||||||||    
T  9296292 gatccttccaatggtgaactcctcactacccaaggtgattacaatgtttt 9296243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 102 - 194
Target Start/End: Complemental strand, 41586482 - 41586389
Alignment:
Q  102 aatgaatcctaagagaaaacacacaaggaagctttttgatccttccaatggtgaaatctcactacctaaggtgtttacaa-tgttttccaaccc 194  Q
    |||| ||||||||||||||||   ||| || ||||||||| || |   | || ||||||||||||| ||||||||||||| |||||||||||||    
T  41586482 aatggatcctaagagaaaacattaaagaaaactttttgattctcctcctagtaaaatctcactacccaaggtgtttacaactgttttccaaccc 41586389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 120
Target Start/End: Complemental strand, 27149321 - 27149207
Alignment:
Q  7 atgaaagtgttacaaaagagttgcaagaaattagcttataaccttacaaaagaacaaaacataatttctacccattttgt--gtcactcacactctcaat 104  Q
    ||||||||| |||||| | ||  |||||||||| |||| || || ||||| |||||| || ||| |||||||  |||| |  ||||| ||||||| ||||    
T  27149321 atgaaagtgatacaaaggggtaacaagaaattaccttaaaagctcacaaa-gaacaagacttaacttctacctgttttttaagtcacccacactcacaat 27149223  T
Q  105 gaatcctaagagaaaa 120  Q
    ||||||||||||||||    
T  27149222 gaatcctaagagaaaa 27149207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 157; Significance: 1e-83; HSPs: 30)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 19072992 - 19073192
Alignment:
Q  1 actaagatgaaagtgttacaaaagagttgcaagaaattagcttataaccttacaaaagaacaaaacataatttctacccattttgtgtcactcacactct 100  Q
    |||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| || |||||||||||||||||||||||||||||||||    
T  19072992 actaagatgaaagtgttacaaaagagttacaagaaattagcttataagcttacaaaagaacaatacctaatttctacccattttgtgtcactcacactct 19073091  T
Q  101 c-aatgaatcctaagagaaaacacacaaggaagctttttgatccttccaatggtgaaatctcactacctaaggtgtttacaatgttttccaaccctcaag 199  Q
    | |||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| ||||||||||||    
T  19073092 caaatgaaccctaagagaaaacacaaaaggaagctttttgatccttccaatggtgaaatctcactatccaaggtgtttacaatgtttcccaaccctcaag 19073191  T
Q  200 a 200  Q
    |    
T  19073192 a 19073192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 19120882 - 19121082
Alignment:
Q  1 actaagatgaaagtgttacaaaagagttgcaagaaattagcttataaccttacaaaagaacaaaacataatttctacccattttgtgtcactcacactct 100  Q
    |||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| || |||||||||||||||||||||||||||||||||    
T  19120882 actaagatgaaagtgttacaaaagagttacaagaaattagcttataagcttacaaaagaacaatacctaatttctacccattttgtgtcactcacactct 19120981  T
Q  101 c-aatgaatcctaagagaaaacacacaaggaagctttttgatccttccaatggtgaaatctcactacctaaggtgtttacaatgttttccaaccctcaag 199  Q
    | |||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| ||||||||||||    
T  19120982 caaatgaaccctaagagaaaacacaaaaggaagctttttgatccttccaatggtgaaatctcactatccaaggtgtttacaatgtttcccaaccctcaag 19121081  T
Q  200 a 200  Q
    |    
T  19121082 a 19121082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 4 - 200
Target Start/End: Complemental strand, 40816844 - 40816649
Alignment:
Q  4 aagatgaaagtgttacaaaagagttgcaagaaattagcttataaccttacaaaagaacaaaacataatttctacccattttgtgtcactcacactctcaa 103  Q
    ||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| || |||||||||| ||||| ||||||| |||||||||||    
T  40816844 aagatgaaagtgttacaaaagagttacaagaaattagcttataagcttacaaaagaacaagacctaatttctactcattt-gtgtcacccacactctcaa 40816746  T
Q  104 tgaatcctaagagaaaacacacaaggaagctttttgatccttccaatggtgaaatctcactacctaaggtgtttacaatgttttccaaccctcaaga 200  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||    
T  40816745 tgaatcctaagagaaaacacaaaaggaagctttttgatccttccaatggtgaaatctcactacccaaggtgtttacaatgtttcccaaccctcaaga 40816649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 194
Target Start/End: Original strand, 13598462 - 13598658
Alignment:
Q  1 actaagatgaaagtgttacaaaagagttgcaagaaattagcttataaccttacaaaagaacaaaacataatttctacccattttgtgtcactcacactct 100  Q
    |||| ||||||||||||||||||||| | |||||||||||||||||| |||||| |||||||| || |||||||||| ||||||||||||| ||||||||    
T  13598462 actatgatgaaagtgttacaaaagagatacaagaaattagcttataagcttacacaagaacaagacttaatttctactcattttgtgtcacccacactct 13598561  T
Q  101 caatga---atcctaagagaaaacacacaaggaagctttttgatccttccaatggtgaaatctcactacctaaggtgtttacaatgttttccaaccc 194  Q
    ||||||   |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||    
T  13598562 caatgatgaatcctaagagaaaacacaaaaggaagctttttgatccttccaatggtgaaatctcactacccaaggtgtttacaatgtttgccaaccc 13598658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 16124549 - 16124353
Alignment:
Q  1 actaagatgaaagtgttacaaaagagttgcaagaaattagcttataaccttacaaaagaacaaaacataatttctacccattttgtgtcactcacactct 100  Q
    |||| ||||||||||||||||||||||| |||||||||||||||||| |||||| |||||||| || ||||||||||||||||||||| || |||||| |    
T  16124549 actatgatgaaagtgttacaaaagagttacaagaaattagcttataagcttacataagaacaagacctaatttctacccattttgtgttacccacacttt 16124450  T
Q  101 caat---gaatcctaagagaaaacacacaaggaagctttttgatccttccaatggtgaaatctcactacctaaggtgtttacaatgttttccaaccc 194  Q
    ||||   |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||    
T  16124449 caataatgaatcctaagagaaaacacaaaaggaagctttttgatccttccaatggtgaaatctcactacccaaggtgtttacaatgtttcccaaccc 16124353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 1 - 194
Target Start/End: Original strand, 29651875 - 29652071
Alignment:
Q  1 actaagatgaaagtgttacaaaagagttgcaagaaattagcttataaccttacaaaagaacaaaacataatttctacccattttgtgtcactcacactct 100  Q
    |||| |||||||||||||||||||| || |||||||||| ||||||| |||||| |||||||| || |||||||||||||||||||||||| ||||||||    
T  29651875 actatgatgaaagtgttacaaaagaattacaagaaattaacttataagcttacacaagaacaagacctaatttctacccattttgtgtcacccacactct 29651974  T
Q  101 caat---gaatcctaagagaaaacacacaaggaagctttttgatccttccaatggtgaaatctcactacctaaggtgtttacaatgttttccaaccc 194  Q
    ||||   |||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||    
T  29651975 caataatgaatcctaagagaaaacacaaaaggaaactttttgatccttccaatggtgaaatctcactacccaaggtgtttacaatgtttcccaaccc 29652071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 47703969 - 47703768
Alignment:
Q  1 actaagatgaaagtgttacaaaagagttgcaagaaattagcttataaccttacaaaagaacaaaacataatttctacccattttgtgtcactcacactct 100  Q
    |||| |||||||||||||||||||| || ||||||||||||||| || |||||| |||||||| || |||||||||||||||||||||||| ||| |||     
T  47703969 actatgatgaaagtgttacaaaagaattacaagaaattagcttacaagcttacacaagaacaagacctaatttctacccattttgtgtcacccactctca 47703870  T
Q  101 caat--gaatcctaagagaaaacacacaaggaagctttttgatccttccaatggtgaaatctcactacctaaggtgtttacaatgttttccaaccctcaa 198  Q
    ||||  |||||||||||||||||||| ||||||| ||||| ||| |||||||||||||||||||||||| |||||||||||||||||| |||||||||||    
T  47703869 caatatgaatcctaagagaaaacacaaaaggaagtttttttatcattccaatggtgaaatctcactacccaaggtgtttacaatgtttcccaaccctcaa 47703770  T
Q  199 ga 200  Q
    ||    
T  47703769 ga 47703768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 47098857 - 47098664
Alignment:
Q  1 actaagatgaaagtgttacaaaagagttgcaagaaattagcttataaccttacaaaagaacaaaacataatttctacccattttgtg-tcactcacactc 99  Q
    |||||||||||||||||||||  ||||| |||||||||||||||||| |||||||||||||||  | |||||||||||||||||    |||| |||||||    
T  47098857 actaagatgaaagtgttacaat-gagttacaagaaattagcttataagcttacaaaagaacaagtcctaatttctacccattttcacatcacccacactc 47098759  T
Q  100 tcaatgaatcctaagagaaaacacacaaggaagctttttgatccttccaatggtgaaatctcactacctaaggtgtttacaatgttttccaaccc 194  Q
    |||||||| ||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||    
T  47098758 tcaatgaaacctaagaaaaaacacaaaaggaagctttttgatccttccaatggtgaaatctcactacccaaggtgtttacaatgtttcccaaccc 47098664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 1 - 193
Target Start/End: Original strand, 9476325 - 9476519
Alignment:
Q  1 actaagatgaaagtgttacaaaagagttgcaagaaattagcttataaccttacaaaagaacaaaacataatttctacccattttgtgtcactcacactct 100  Q
    |||| ||||||||| |||||||||||||  |||||||||||||| || |||||| |||||||| || ||||||||| |||||||||||||||||| |||     
T  9476325 actatgatgaaagtattacaaaagagttataagaaattagcttacaagcttacacaagaacaagacctaatttctatccattttgtgtcactcactctca 9476424  T
Q  101 caatg--aatcctaagagaaaacacacaaggaagctttttgatccttccaatggtgaaatctcactacctaaggtgtttacaatgttttccaacc 193  Q
    |||||  |||| |||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| ||| |||||||||||||| ||||||    
T  9476425 caatgtgaatcttaagagaaaacacaaaaggaagctttttgatccttcaaatggtgaaatctcactacccaagatgtttacaatgtttcccaacc 9476519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 47102874 - 47102678
Alignment:
Q  1 actaagatgaaagtgttacaaaagagttgcaagaaattagcttataaccttacaaaagaacaaaacataatttcta--cccattttg--tgtcactcaca 96  Q
    |||||||||||| ||||||||  ||||| |||||||||| ||||||| | |||||||||||||  | |||||||||  ||||||||   | |||||||||    
T  47102874 actaagatgaaaatgttacaat-gagttacaagaaattaacttataagcatacaaaagaacaagtcctaatttctatacccatttttcatatcactcaca 47102776  T
Q  97 ctctcaatgaatcctaagagaaaacacacaaggaagctttttgatccttccaatggtgaaatctcactacctaaggtgtttacaatgttttccaaccc 194  Q
    ||||||||||||||||||| |||||||| ||| |||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| |||||||    
T  47102775 ctctcaatgaatcctaagaaaaaacacaaaagaaagctttttgatccttccaatgatgaaatctcactacccaaggtgtttacaatgtttcccaaccc 47102678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 4 - 194
Target Start/End: Original strand, 22819496 - 22819689
Alignment:
Q  4 aagatgaaagtgttacaaaagagttgcaagaaattagcttataaccttacaaaagaacaaaacataatttctacccattttgt--gtcactcacactctc 101  Q
    |||||||||||| |||||| ||||| |||||||||||||| | | || ||||| ||| || |||||||||||| |||||||    ||||| |||||||||    
T  22819496 aagatgaaagtgatacaaatgagttacaagaaattagctttttagctcacaaa-gaataagacataatttctaaccatttttcaagtcacccacactctc 22819594  T
Q  102 aatgaatcctaagagaaaacacacaa--ggaagctttttgatccttccaatggtgaaatctcactacctaaggtgtttacaatgttttccaaccc 194  Q
    ||||||||||||||||||| ||||||  ||||||||||||||||||||||||||||||| | |||||| |||||||||||||||||| |||||||    
T  22819595 aatgaatcctaagagaaaaaacacaaaaggaagctttttgatccttccaatggtgaaatgtaactacccaaggtgtttacaatgtttcccaaccc 22819689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 6 - 194
Target Start/End: Original strand, 3281777 - 3281965
Alignment:
Q  6 gatgaaagtgttacaaaagagttgcaagaaattagcttataaccttacaaaagaacaaaacataatttctacccattttgtgtcactcacactctcaatg 105  Q
    ||||||||||||||||| ||||| ||||||| ||||||  || |||||| |||||||| || |||||||||||||||| ||||  | ||| |||||||||    
T  3281777 gatgaaagtgttacaaa-gagttacaagaaaatagcttgcaagcttacacaagaacaagacctaatttctacccattt-gtgtttcccactctctcaatg 3281874  T
Q  106 a---atcctaagagaaaacacacaaggaagctttttgatccttccaatggtgaaatctcactacctaaggtgtttacaatgttttccaaccc 194  Q
    |   | |||||||||| ||||| |||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |||||||    
T  3281875 atgaaccctaagagaagacacaaaaggaagctttt-gatccttccaatggtgaaatctcactacccaaggtgtttacaatgtttcccaaccc 3281965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 6 - 194
Target Start/End: Complemental strand, 26644925 - 26644737
Alignment:
Q  6 gatgaaagtgttacaaaagagttgcaagaaattagcttataaccttacaaaagaacaaaacataatttctacccattttgtgtcactcacactctcaatg 105  Q
    ||||||||||||||||| ||||| ||||||| ||||||  || |||||| |||||||| || |||||||||||||||| ||||  ||||| |||||||||    
T  26644925 gatgaaagtgttacaaa-gagttacaagaaaatagcttgcaagcttacacaagaacaagacctaatttctacccattt-gtgtttctcactctctcaatg 26644828  T
Q  106 a---atcctaagagaaaacacacaaggaagctttttgatccttccaatggtgaaatctcactacctaaggtgtttacaatgttttccaaccc 194  Q
    |   | |||||||||| ||||| |||||||||||| ||||||||||||||||||||||||||||  |||||||||||||||||| |||||||    
T  26644827 atgaaccctaagagaagacacaaaaggaagctttt-gatccttccaatggtgaaatctcactactcaaggtgtttacaatgtttcccaaccc 26644737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 194
Target Start/End: Original strand, 32889503 - 32889696
Alignment:
Q  1 actaagatgaaagtgttacaaaagagttgcaagaaat-tagcttataaccttacaaaagaacaaaacataatttctacccattttg--tgtcactcacac 97  Q
    |||||||||||||||||||||  ||||| |||||||  ||||||  || |||||| ||||||||  | |||||||||||||||||   | |||| |||||    
T  32889503 actaagatgaaagtgttacaat-gagttacaagaaaaatagcttgcaagcttacacaagaacaagtcctaatttctacccatttttcatatcacccacac 32889601  T
Q  98 tctcaatgaatcctaagagaaaacacacaaggaagctttttgatccttccaatggtgaaatctcactacctaaggtgtttacaatgttttccaaccc 194  Q
    ||||||||||||||||||||||||||| ||| |||||||| || |||||||||||||||||||||||||| |||||||||||||||||| |||||||    
T  32889602 tctcaatgaatcctaagagaaaacacaaaag-aagctttt-gaaccttccaatggtgaaatctcactacccaaggtgtttacaatgtttcccaaccc 32889696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 7 - 193
Target Start/End: Complemental strand, 21536596 - 21536410
Alignment:
Q  7 atgaaagtgttacaaaagagttgcaagaaattagcttataaccttacaaaagaacaaaacataatttctacccattttgtgtcactcacactctcaatga 106  Q
    |||||||||||||||| ||||| ||||||| ||||||  || |||||| |||||||| || |||||||||||| ||| |||| || ||| ||||||||||    
T  21536596 atgaaagtgttacaaa-gagttacaagaaaatagcttgcaagcttacacaagaacaatacttaatttctacccgttt-gtgttacccactctctcaatga 21536499  T
Q  107 ---atcctaagagaaaacacacaaggaagctttttgatccttccaatggtgaaatctcactacctaaggtgtttacaatgttttccaacc 193  Q
       | |||||||||| ||||| |||||||||||  |||||||||||||||||||||| |||||| |||||||||||||||||||||||||    
T  21536498 tgaaccctaagagaagacacaaaaggaagctttc-gatccttccaatggtgaaatcttactacccaaggtgtttacaatgttttccaacc 21536410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 13604656 - 13604461
Alignment:
Q  1 actaagatgaaagtgttacaaaagagttgcaagaaat-tagcttataaccttacaaaagaacaaaacataatttctacccattttgtgtcactcacactc 99  Q
    |||| ||||||| ||||||||| ||||| |||||||  ||||||  || |||||| |||||||| || |||||||||||||||| ||||  | ||| |||    
T  13604656 actatgatgaaaatgttacaaa-gagttacaagaaaaatagcttgcaaacttacacaagaacaagacctaatttctacccattt-gtgtttcccactctc 13604559  T
Q  100 tcaat---gaatcctaa-gagaaaacacacaaggaagctttttgatccttccaatggtgaaatctcactacctaaggtgtttacaatgttttccaaccc 194  Q
    |||||   ||| ||||| ||||| ||||| |||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |||||||    
T  13604558 tcaataatgaaccctaaagagaagacacaaaaggaagctttt-gatccttccaatggtgaaatctcactacccaaggtgtttacaatgtttcccaaccc 13604461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 93 - 186
Target Start/End: Complemental strand, 9022844 - 9022753
Alignment:
Q  93 cacactctcaatgaatcctaagagaaaacacacaaggaagctttttgatccttccaatggtgaaatctcactacctaaggtgtttacaatgttt 186  Q
    ||||||| ||||||||||||||||||||| ||  |||||||||||| |||||||||||||||||||||||||||  ||||||||||||||||||    
T  9022844 cacactcacaatgaatcctaagagaaaactca--aggaagcttttttatccttccaatggtgaaatctcactacgaaaggtgtttacaatgttt 9022753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 104 - 194
Target Start/End: Complemental strand, 27104330 - 27104240
Alignment:
Q  104 tgaatcctaagagaaaacacacaaggaagctttttgatccttccaatggtgaaatctcactacctaaggtgtttacaatgttttccaaccc 194  Q
    |||||| |||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| |||||| ||| ||||||| |||||||    
T  27104330 tgaatcttaagagaaaacacaaaaggaagctttttgattcttccaatggtgaaatctcactacccaaggtgcttataatgtttcccaaccc 27104240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 49 - 194
Target Start/End: Original strand, 37069878 - 37070025
Alignment:
Q  49 cttacaaaagaacaaaacataatttctacccattttgtgtcactcacactctcaat---gaatcctaa-gagaaaacacacaaggaagctttttgatcct 144  Q
    |||||| |||||||| || |||||||||||||||| |||| || ||| | ||||||   ||| | ||| ||||| ||||| |||||||||||| ||||||    
T  37069878 cttacacaagaacaagacctaatttctacccattt-gtgttacccactcactcaataatgaaccataaagagaagacacaaaaggaagctttt-gatcct 37069975  T
Q  145 tccaatggtgaaatctcactacctaaggtgtttacaatgttttccaaccc 194  Q
    |||||||||||||||||| || | |||||||||||||||||| |||||||    
T  37069976 tccaatggtgaaatctcattatccaaggtgtttacaatgtttcccaaccc 37070025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 112 - 189
Target Start/End: Complemental strand, 19358761 - 19358685
Alignment:
Q  112 aagagaaaacacacaaggaagctttttgatccttccaatggtgaaatctcactacctaaggtgtttacaatgttttcc 189  Q
    ||||||| |||||  ||||||||||  ||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  19358761 aagagaagacacaagaggaagcttta-gatccttccaatggtgaaatctcactacccaaggtgtttacaatgttttcc 19358685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 112 - 189
Target Start/End: Complemental strand, 19361350 - 19361274
Alignment:
Q  112 aagagaaaacacacaaggaagctttttgatccttccaatggtgaaatctcactacctaaggtgtttacaatgttttcc 189  Q
    ||||||| |||||  ||||||||||  ||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  19361350 aagagaagacacaagaggaagcttta-gatccttccaatggtgaaatctcactacccaaggtgtttacaatgttttcc 19361274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 112 - 187
Target Start/End: Complemental strand, 19379990 - 19379916
Alignment:
Q  112 aagagaaaacacacaaggaagctttttgatccttccaatggtgaaatctcactacctaaggtgtttacaatgtttt 187  Q
    ||||||| |||||  ||||||||||  ||||||||||||||||||||||||||||| |||||||||||||||||||    
T  19379990 aagagaagacacaagaggaagcttta-gatccttccaatggtgaaatctcactacccaaggtgtttacaatgtttt 19379916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 112 - 187
Target Start/End: Complemental strand, 19366226 - 19366152
Alignment:
Q  112 aagagaaaacacacaaggaagctttttgatccttccaatggtgaaatctcactacctaaggtgtttacaatgtttt 187  Q
    ||||||| |||||  ||||||||||  ||||||||||||||||||||||||||||| |||||||||||||| ||||    
T  19366226 aagagaagacacaagaggaagcttta-gatccttccaatggtgaaatctcactacccaaggtgtttacaatatttt 19366152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 87 - 194
Target Start/End: Complemental strand, 11031420 - 11031313
Alignment:
Q  87 gtcactcacactctcaatgaatcctaagagaaaa-cacacaaggaagctttttgatccttccaatggtgaaatctcactacctaaggtgtttac-aatgt 184  Q
    |||| |||||||| ||||| |||||||||||||| |||  |||||||||||||||||||||||||  ||||  ||||||||| | ||||||||| |||||    
T  11031420 gtcattcacactcacaatgtatcctaagagaaaaacactaaaggaagctttttgatccttccaataatgaa--ctcactacccacggtgtttacaaatgt 11031323  T
Q  185 tttccaaccc 194  Q
    || |||||||    
T  11031322 ttcccaaccc 11031313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 55 - 137
Target Start/End: Complemental strand, 17345499 - 17345415
Alignment:
Q  55 aaagaacaaaacataatttctacccattttgt--gtcactcacactctcaatgaatcctaagagaaaacacacaaggaagctttt 137  Q
    |||||||||||| ||||||||||||||||| |  ||||| |||||||| |||||||| |||||||||||||| ||| || |||||    
T  17345499 aaagaacaaaacctaatttctacccattttttaagtcacccacactcttaatgaatcttaagagaaaacacaaaagaaaactttt 17345415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 30 - 147
Target Start/End: Complemental strand, 35109541 - 35109423
Alignment:
Q  30 caagaaattagcttataaccttacaaaagaacaaaacataatttctacccattttgt--gtcactcacactctcaatgaatcctaagagaaaacacacaa 127  Q
    ||||||||||||||| || || ||||| ||||||| | ||||||||||||| |||    ||||| ||||||| |||||||||||| ||||||| ||  ||    
T  35109541 caagaaattagcttaaaagctcacaaa-gaacaaaccttaatttctacccaattttcaagtcacacacactcacaatgaatcctacgagaaaatactaaa 35109443  T
Q  128 ggaagctttttgatccttcc 147  Q
    ||||||||||| ||||||||    
T  35109442 ggaagcttttttatccttcc 35109423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 139 - 187
Target Start/End: Complemental strand, 24202661 - 24202613
Alignment:
Q  139 gatccttccaatggtgaaatctcactacctaaggtgtttacaatgtttt 187  Q
    ||||||||||||||||| ||||||||||| |||||| ||||||||||||    
T  24202661 gatccttccaatggtgagatctcactacccaaggtgattacaatgtttt 24202613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 27104405 - 27104362
Alignment:
Q  1 actaagatgaaagtgttacaaaagagttgcaagaaattagctta 44  Q
    |||| ||||||||||||||||||||||| |||||||||||||||    
T  27104405 actatgatgaaagtgttacaaaagagttacaagaaattagctta 27104362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 95 - 181
Target Start/End: Original strand, 8281477 - 8281563
Alignment:
Q  95 cactctcaatgaatcctaagagaaaacacacaaggaagctttttgatccttccaatggtgaaatctcactacctaaggtgtttacaa 181  Q
    ||||| |||||||||| ||||||||||||  ||||||| ||||| || |||||  |  ||| ||||||||||| |||||||||||||    
T  8281477 cactcacaatgaatccaaagagaaaacactaaaggaagtttttttattcttcctctaatgagatctcactacccaaggtgtttacaa 8281563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 84
Target Start/End: Complemental strand, 11032324 - 11032271
Alignment:
Q  30 caagaaattagcttataaccttacaaaagaacaaaacataatttctacccatttt 84  Q
    ||||||||||| ||| || || ||||| |||||||||||||||||||||||||||    
T  11032324 caagaaattagattaaaaactcacaaa-gaacaaaacataatttctacccatttt 11032271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 156; Significance: 5e-83; HSPs: 37)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 25795845 - 25796044
Alignment:
Q  1 actaagatgaaagtgttacaaaagagttgcaagaaattagcttataaccttacaaaagaacaaaacataatttctacccattttgtgtcactcacactct 100  Q
    ||||||||||||||||||| |||||||| |||||||||||||||||| ||||||||||||||| || |||||||||||||||||||||||| ||||||||    
T  25795845 actaagatgaaagtgttacgaaagagttacaagaaattagcttataagcttacaaaagaacaagacctaatttctacccattttgtgtcacccacactct 25795944  T
Q  101 caatgaatcctaagagaaaacacacaaggaagctttttgatccttccaatggtgaaatctcactacctaaggtgtttacaatgttttccaaccctcaaga 200  Q
    |||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| |||||||||||||    
T  25795945 caatgaatcctaagagaaaacataaaaggaagctttttgatccttccaatggtgaaatctcactacccaaggtgtttacattgtttcccaaccctcaaga 25796044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 18552906 - 18552716
Alignment:
Q  1 actaagatgaaagtgttacaaaagagttgcaagaaattagcttataaccttacaaaagaacaaaacataatttctacccattttgtgtcactcacactct 100  Q
    |||| ||||||||||||||||||||||| |||||||||||||||||| |||||| |||||||| || |||||||||||||||||||||||| ||||||||    
T  18552906 actatgatgaaagtgttacaaaagagttacaagaaattagcttataagcttacacaagaacaagacctaatttctacccattttgtgtcacccacactct 18552807  T
Q  101 caatgaatcctaagagaaaacacacaaggaagctttttgatccttccaatggtgaaatctcactacctaaggtgtttacaatgttttccaa 191  Q
    |||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||    
T  18552806 caatgaatcctaagagaaaacacaaaaggaagttttttgatccttccaatggtgaaatctcactacccaaggtgtttacaatgtttcccaa 18552716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 6 - 194
Target Start/End: Complemental strand, 24695182 - 24694994
Alignment:
Q  6 gatgaaagtgttacaaaagagttgcaagaaattagcttataaccttacaaaagaacaaaacataatttctacccattttgtgtcactcacactctcaatg 105  Q
    ||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| || |||||||||||||||||||||||| |||||||||||||    
T  24695182 gatgaaagtgttacaaaagagttacaagaaattagcttataaacttacaaaagaacaagacctaatttctacccattttgtgtcacccacactctcaatg 24695083  T
Q  106 aatcctaagagaaaacacacaaggaagctttttgatccttccaatggtgaaatctcactacctaaggtgtttacaatgttttccaaccc 194  Q
    |||||||| |||||||||| ||||||||||||||||| |||||||||||||||||||| ||| |||||||||||||||||| |||||||    
T  24695082 aatcctaaaagaaaacacaaaaggaagctttttgatcattccaatggtgaaatctcaccacccaaggtgtttacaatgtttcccaaccc 24694994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 139; E-Value: 6e-73
Query Start/End: Original strand, 1 - 194
Target Start/End: Original strand, 8126694 - 8126888
Alignment:
Q  1 actaagatgaaagtgttacaaaagagttgcaagaaattagcttataaccttacaaaagaacaaaacataatttctacccatttt-gtgtcactcacactc 99  Q
    |||| ||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| || ||||||||||||||||| ||||||| |||||||    
T  8126694 actacgatgaaagtgttacaaaagagttacaagaaattagcttataagcttacaaaagaacaatacttaatttctacccatttttgtgtcacccacactc 8126793  T
Q  100 tcaatgaatcctaagagaaaacacacaaggaagctttttgatccttccaatggtgaaatctcactacctaaggtgtttacaatgttttccaaccc 194  Q
    |||||||||| |||||||||||||| || ||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| |||||||    
T  8126794 tcaatgaatcttaagagaaaacacaaaaagaagctttttgatccttccaatgatgaaatctcactacccaaggtgtttacaatgtttcccaaccc 8126888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 1 - 193
Target Start/End: Original strand, 48438278 - 48438473
Alignment:
Q  1 actaagatgaaagtgttacaaaagagttgcaagaaattagcttataaccttacaaaagaacaaaacataatttctacccattttgtgtcactcacactct 100  Q
    |||| ||||||||||||||||||||||| |||||||||||| ||||| |||||| |||||||| || |||||||||||||||||||||||| ||||||||    
T  48438278 actatgatgaaagtgttacaaaagagttacaagaaattagcatataagcttacacaagaacaagacctaatttctacccattttgtgtcacccacactct 48438377  T
Q  101 caat---gaatcctaagagaaaacacacaaggaagctttttgatccttccaatggtgaaatctcactacctaaggtgtttacaatgttttccaacc 193  Q
    ||||   |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| ||||||    
T  48438378 caataatgaatcctaagagaaaacacaaaaggaagctttttgatcattccaatggtgaaatctcactacccaaggtgtttacaatgtttcccaacc 48438473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 133; E-Value: 2e-69
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 40592805 - 40592610
Alignment:
Q  1 actaagatgaaagtgttacaaaagagttgcaagaaattagcttataaccttacaaaagaacaaaacataatttctacccattttgtgtcactcacactct 100  Q
    |||| ||||||||||||||||||||||| ||||||||||||||| || |||||| ||||||||||  |||||||||||||||||||||||| ||| |||     
T  40592805 actatgatgaaagtgttacaaaagagttacaagaaattagcttacaagcttacacaagaacaaaatctaatttctacccattttgtgtcacccactctca 40592706  T
Q  101 caat--gaatcctaagagaaaacacacaaggaagctttttgatccttccaatggtgaaatctcactacctaaggtgtttacaatgttttccaaccc 194  Q
    ||||  |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||    
T  40592705 caatatgaatcctaagagaaaacacaaaaggaagctttttgatccttccaatggtgaaatctcactacccaaggtgtttacaatgtttcccaaccc 40592610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 1736328 - 1736132
Alignment:
Q  1 actaagatgaaagtgttacaaaagagttgcaagaaattagcttataaccttacaaaagaacaaaacataatttctacccattttgtgtcactcacactct 100  Q
    |||| ||||||||||||||||||||||| |||||||||| ||||||| |||||| |||||||| || ||||||||||||||||||||||||  |||||||    
T  1736328 actatgatgaaagtgttacaaaagagttacaagaaattaacttataagcttacacaagaacaagacctaatttctacccattttgtgtcaccaacactct 1736229  T
Q  101 caat---gaatcctaagagaaaacacacaaggaagctttttgatccttccaatggtgaaatctcactacctaaggtgtttacaatgttttccaaccc 194  Q
    ||||   |||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||    
T  1736228 caataatgaatcctaagagaaaacacaaaaagaagctttttgatccttccaatggtgaaatctcactacccaaggtgtttacaatgtttcccaaccc 1736132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 3716025 - 3715824
Alignment:
Q  1 actaagatgaaagtgttacaaaagagttgcaagaaattagcttataaccttacaaaagaacaaaacataatttctacccattttgtgtcactcacactct 100  Q
    |||| ||||||||||||||||||||||| ||||||||||||||| || |||||| |||||||| || |||||||||||||||||||||||| |||  ||     
T  3716025 actatgatgaaagtgttacaaaagagttacaagaaattagcttacaaacttacacaagaacaagacttaatttctacccattttgtgtcacccactttca 3715926  T
Q  101 caat--gaatcctaagagaaaacacacaaggaagctttttgatccttccaatggtgaaatctcactacctaaggtgtttacaatgttttccaaccctcaa 198  Q
    ||||  |||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||    
T  3715925 caatatgaatcctaagagaaaacacaaaagaaagctttttgatccttccaatggtgaaatctcactacccaaggtgtttacaatgtttcccaaccctcaa 3715826  T
Q  199 ga 200  Q
    ||    
T  3715825 ga 3715824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 127; E-Value: 9e-66
Query Start/End: Original strand, 1 - 194
Target Start/End: Original strand, 26299052 - 26299246
Alignment:
Q  1 actaagatgaaagtgttacaaaagagttgcaagaaattagcttataaccttacaaaagaacaaaacataatttctacccattttgtgtcactcacactct 100  Q
    |||| ||||||||||||||||||||||| |||||||||||||||||| |||| | |||||||| || |||||||||||||||||||||||| |||| |||    
T  26299052 actatgatgaaagtgttacaaaagagttacaagaaattagcttataaacttagacaagaacaagacctaatttctacccattttgtgtcacccacaatct 26299151  T
Q  101 caatgaatcctaagagaaaacac-acaaggaagctttttgatccttccaatggtgaaatctcactacctaaggtgtttacaatgttttccaaccc 194  Q
    |||| |||||||||||||||||| | ||||||||||||||||  |||||||||||||||||||||||| |||||||||||||||||| |||||||    
T  26299152 caattaatcctaagagaaaacacaaaaaggaagctttttgataattccaatggtgaaatctcactacccaaggtgtttacaatgtttcccaaccc 26299246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 1 - 194
Target Start/End: Original strand, 36029157 - 36029351
Alignment:
Q  1 actaagatgaaagtgttacaaaagagttgcaagaaattagcttataaccttacaaaagaacaaaacataatttctacccattttgtgtcactcacactct 100  Q
    |||| ||||||||||||||||||||||| ||||||||||||||| || |||||| |||||||| || |||||||||||||||||||||||||||| |||     
T  36029157 actatgatgaaagtgttacaaaagagttacaagaaattagcttacaaacttacacaagaacaagacctaatttctacccattttgtgtcactcactctca 36029256  T
Q  101 ca--atgaatcctaagagaaaacacacaaggaagctttttgatccttccaatggtgaaatctcactacctaaggtgtttacaatgttttccaaccc 194  Q
     |  |||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||    
T  36029257 aaatatgaatcctaagagaaaacacaaaaggaagc-ttttgatccttccaatggtgaaatctcactacccaaggtgtttacaatgtttcccaaccc 36029351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 1 - 186
Target Start/End: Original strand, 40844715 - 40844905
Alignment:
Q  1 actaagatgaaagtgttacaaaagagttgcaagaaattagcttataaccttacaaaagaacaaaacataatttctacccattttgtgtcactcacactct 100  Q
    |||| ||||||||||||||||||||||| |||||||||||||||||| |||||| |||||||| || |||||||||||||||||||||||| ||||||||    
T  40844715 actatgatgaaagtgttacaaaagagttacaagaaattagcttataagcttacacaagaacaagacctaatttctacccattttgtgtcacccacactct 40844814  T
Q  101 caatgaatcctaagagaaaacacacaaggaagctttttgatccttccaatggtga-----aatctcactacctaaggtgtttacaatgttt 186  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||| |     ||||||| |||  ||||||||||||||||||    
T  40844815 caatgaatcctaagagaaaacacaaaaggaagctttttgatccttccaatggtcaggtcaaatctcattactcaaggtgtttacaatgttt 40844905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 3323713 - 3323519
Alignment:
Q  1 actaagatgaaagtgttacaaaagagttgcaagaaattagcttataaccttacaaaagaacaaaacataatttctacccattttg--tgtcactcacact 98  Q
    |||||||||||||||||||||  ||||| |||||||||||||||||| |||||||||||||||  ||||||||||||||||| |   | |||| ||||||    
T  3323713 actaagatgaaagtgttacaat-gagttacaagaaattagcttataagcttacaaaagaacaagtcataatttctacccattgttcatatcacccacact 3323615  T
Q  99 ctcaatgaatcctaagagaaaacacacaaggaagctttttgatccttccaatggtgaaatctcactacctaaggtgtttacaatgttttccaaccc 194  Q
    |||||||||| ||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| |||||||    
T  3323614 ctcaatgaattctaagagaaaacacaaaaggaagctttttgatcattccaatggtgaaatctcactacccaaggtgtttacaatgtttcccaaccc 3323519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 3328379 - 3328185
Alignment:
Q  1 actaagatgaaagtgttacaaaagagttgcaagaaattagcttataaccttacaaaagaacaaaacataatttctacccattttg--tgtcactcacact 98  Q
    |||||||||||||||||||||  ||||| |||||||||||||||||| |||||||||||||||  | |||||||||||||||||   | |||| ||||||    
T  3328379 actaagatgaaagtgttacaat-gagttacaagaaattagcttataagcttacaaaagaacaagtcctaatttctacccatttttcatatcacccacact 3328281  T
Q  99 ctcaatgaatcctaagagaaaacacacaaggaagctttttgatccttccaatggtgaaatctcactacctaaggtgtttacaatgttttccaaccc 194  Q
    ||||||| |||||||||||||||||| ||||||| |||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  3328280 ctcaatgtatcctaagagaaaacacaaaaggaagttttttgatccttccaatgctgaaatctcactacccaaggtgtttacaatgttttccaaccc 3328185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 47923929 - 47923732
Alignment:
Q  1 actaagatgaaagtgttacaaaagagttgcaagaaattagcttataaccttaca-aaagaacaaaacataatttctacccattttgtgtcactcacactc 99  Q
    |||| |||||||||| |||||||||||| ||||||||||||||| ||  ||||| ||||| |||||| |||||| ||||||||||||||||  |||||||    
T  47923929 actatgatgaaagtgctacaaaagagttacaagaaattagcttaaaagtttacacaaagagcaaaacctaatttatacccattttgtgtcatccacactc 47923830  T
Q  100 tcaat---gaatcctaagagaaaacacacaaggaagctttttgatccttccaatggtgaaatctcactacctaaggtgtttacaatgttttccaaccc 194  Q
    |||||   |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||    
T  47923829 tcaataatgaatcctacgagaaaacacaaaaggaagctttttgatccttccaatggtgaaatctcactacccaaggtgtttacaatgtttcccaaccc 47923732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 30709813 - 30709617
Alignment:
Q  1 actaagatgaaagtgttacaaaagagttgcaagaaattagcttataaccttacaaaagaacaaaacataatttctacccattttgtgtcactcacactct 100  Q
    |||| ||||||| ||||||||||||||| |||||||||||||||||| |||||| |||| ||| || |||||||||||||| ||||||||| ||||||||    
T  30709813 actatgatgaaattgttacaaaagagttacaagaaattagcttataagcttacacaagagcaagacctaatttctacccatcttgtgtcacccacactct 30709714  T
Q  101 caat---gaatcctaagagaaaacacacaaggaagctttttgatccttccaatggtgaaatctcactacctaaggtgtttacaatgttttccaaccc 194  Q
    ||||   |||||||||||||||||||| ||||||||| ||||||| |||||||| |||||||||||| || |||||||||||||||||| |||||||    
T  30709713 caataatgaatcctaagagaaaacacaaaaggaagctatttgatcattccaatgatgaaatctcactccccaaggtgtttacaatgtttcccaaccc 30709617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 1 - 194
Target Start/End: Original strand, 35925544 - 35925736
Alignment:
Q  1 actaagatgaaagtgttacaaaagagttgcaagaaattagcttataaccttacaaaagaacaaaacataatttctacccattttgtgtcactcacactct 100  Q
    |||| ||||||||||||||||| ||||| ||||||||||| |||||| ||||||  |||||||||| |||||||||||||||| ||||||| ||| |||     
T  35925544 actatgatgaaagtgttacaaa-gagttacaagaaattagtttataagcttacactagaacaaaacctaatttctacccattt-gtgtcacccactctca 35925641  T
Q  101 caat--gaatcctaagagaaaacacacaaggaagctttttgatccttccaatggtgaaatctcactacctaaggtgtttacaatgttttccaaccc 194  Q
    ||||  |||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |||||||    
T  35925642 caatatgaatcctaagagaaaacacaaaaggaagctttt-gatccttccaatggtgaaatctcactacccaaggtgtttacaatgtttcccaaccc 35925736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 20 - 200
Target Start/End: Original strand, 47649652 - 47649834
Alignment:
Q  20 aaaagagttgcaagaaattagcttataaccttacaaaagaacaaaacataatttctacccattttgtgtcactcacactctcaat--gaatcctaagaga 117  Q
    ||||||||| |||||||||| |||| || ||| || |||||||| || |||||||||||||||||||||||| ||| ||| ||||  |||||||||||||    
T  47649652 aaaagagttacaagaaattaacttacaagcttccacaagaacaagacctaatttctacccattttgtgtcacccactctcgcaatatgaatcctaagaga 47649751  T
Q  118 aaacacacaaggaagctttttgatccttccaatggtgaaatctcactacctaaggtgtttacaatgttttccaaccctcaaga 200  Q
    ||||||| ||||||||||||||||||||| ||||||||||||| |||||| |||||||||||||||||| |||||||||||||    
T  47649752 aaacacaaaaggaagctttttgatccttcaaatggtgaaatctaactacccaaggtgtttacaatgtttcccaaccctcaaga 47649834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 1417513 - 1417319
Alignment:
Q  1 actaagatgaaagtgttacaaaagagttgcaagaaattagcttataaccttacaaaagaacaaaacataatttctacccattttg--tgtcactcacact 98  Q
    ||||||| |||||||||||||  |||||  ||||||||||||||||| |||||||||||||||  | |||||||||||||||||   | |||| ||||||    
T  1417513 actaagaagaaagtgttacaat-gagttataagaaattagcttataaacttacaaaagaacaagtcctaatttctacccatttttcatatcacccacact 1417415  T
Q  99 ctcaatgaatcctaagagaaaacacacaaggaagctttttgatccttccaatggtgaaatctcactacctaaggtgtttacaatgttttccaaccc 194  Q
    | |||||||||||||||||||||||| ||| || ||||||||||||| |||||||||||||||||||||||| ||||||||||||||| |||||||    
T  1417414 cccaatgaatcctaagagaaaacacaaaagaaaactttttgatcctttcaatggtgaaatctcactacctaaagtgtttacaatgtttcccaaccc 1417319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 8370509 - 8370317
Alignment:
Q  1 actaagatgaaagtgttacaaaagagttgcaagaaattagcttataaccttacaaaagaacaaaacataatttctacccattttgtgtcactcacactct 100  Q
    |||| ||||||||||||||||| ||||| ||||||||||||||| || |||||| |||||||| ||||||||||||||||||| ||||||| ||| |||     
T  8370509 actatgatgaaagtgttacaaa-gagttacaagaaattagcttaaaagcttacacaagaacaagacataatttctacccattt-gtgtcacccactctca 8370412  T
Q  101 caat--gaatcctaagagaaaacacacaaggaagctttttgatccttccaatggtgaaatctcactacctaaggtgtttacaatgttttccaaccc 194  Q
    ||||  |||||||||||||||||||| |||||| ||||| ||||||||||||||||||||||||||||| ||| |||||||||||||| |||||||    
T  8370411 caatatgaatcctaagagaaaacacaaaaggaaactttt-gatccttccaatggtgaaatctcactacccaagatgtttacaatgtttcccaaccc 8370317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 194
Target Start/End: Original strand, 21711287 - 21711480
Alignment:
Q  1 actaagatgaaagtgttacaaaagagttgcaagaaattagcttataaccttacaaaagaacaaaacataatttctacccattttgtgtcactcacactct 100  Q
    |||| ||||||||||||||||| ||||| ||||||||||||||| || |||||| |||| ||| || |||||||||||||||| |||| || ||||||||    
T  21711287 actatgatgaaagtgttacaaa-gagttacaagaaattagcttaaaagcttacacaagagcaagacctaatttctacccattt-gtgttacccacactct 21711384  T
Q  101 caat---gaatcctaagagaaaacacacaaggaagctttttgatccttccaatggtgaaatctcactacctaaggtgtttacaatgttttccaaccc 194  Q
    ||||   |||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||  |||||||||||||||||| |||||||    
T  21711385 caataatgaatcctaagagaaaacacaaaaggaagctttt-gatccttccaatggtgaaatctcactactcaaggtgtttacaatgtttcccaaccc 21711480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 1 - 193
Target Start/End: Original strand, 37466355 - 37466552
Alignment:
Q  1 actaagatgaaagtgttacaaaagagttgcaagaaattagcttataaccttacaaaagaacaaaacataatttctacccattttg--tgtcactcac--- 95  Q
    |||||||||||||||||||||  ||||| ||||||||||  |||||| |||||||||||||||  | |||||||||||||||||   | ||||||||       
T  37466355 actaagatgaaagtgttacaat-gagttacaagaaattaatttataagcttacaaaagaacaagtcctaatttctacccatttttcatatcactcacccg 37466453  T
Q  96 -actctcaatgaatcctaagagaaaacacacaaggaagctttttgatccttccaatggtgaaatctcactacctaaggtgtttacaatgttttccaacc 193  Q
     |||||||||||||||||| | |||||||| |||||||||||| |||| |||||||||||||||||||| ||| || ||||||||||||||| ||||||    
T  37466454 cactctcaatgaatcctaaaataaaacacaaaaggaagcttttcgatctttccaatggtgaaatctcacaacccaaagtgtttacaatgtttcccaacc 37466552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 194
Target Start/End: Original strand, 16264414 - 16264607
Alignment:
Q  1 actaagatgaaagtgttacaaaagagttgcaagaaattagcttataaccttacaaaagaacaaaacataatttctacccattttgtgtcactcacactct 100  Q
    |||| ||||||||||||||||| ||||| ||||||| ||||||  || ||| || |||||||| || |||||||||| ||||| |||| || ||| ||||    
T  16264414 actatgatgaaagtgttacaaa-gagttacaagaaaatagcttgcaagcttccacaagaacaagacctaatttctacacattt-gtgttacccactctct 16264511  T
Q  101 caatga---atcctaagagaaaacacacaaggaagctttttgatccttccaatggtgaaatctcactacctaaggtgtttacaatgttttccaaccc 194  Q
    ||||||   | |||||||||| ||||| |||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |||||||    
T  16264512 caatgatgaaccctaagagaagacacaaaaggaagctttt-gatccttccaatggtgaaatctcactacccaaggtgtttacaatgtttcccaaccc 16264607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 6794736 - 6794545
Alignment:
Q  1 actaagatgaaagtgttacaaaagagttgcaagaaa-ttagcttataaccttacaaaagaacaaaacataatttctacccattttgtgtcactcacactc 99  Q
    |||| ||||||||||||||||| ||||| ||||||| |||||||  || |||||| ||||||||  | |||||||||||||||| ||||||| ||| |||    
T  6794736 actatgatgaaagtgttacaaa-gagttacaagaaaattagcttgcaagcttacacaagaacaagtcctaatttctacccattt-gtgtcacccactctc 6794639  T
Q  100 tcaat--gaatcctaagagaaaacacacaaggaagctttttgatccttccaatggtgaaatctcactacctaaggtgtttacaatgttttccaac 192  Q
     ||||  ||| |||||||||||| ||| |||||||||||| | || |||||||||||||||||||||||| |||||||||||||||||| |||||    
T  6794638 acaatatgaaccctaagagaaaatacaaaaggaagctttt-gttcattccaatggtgaaatctcactacccaaggtgtttacaatgtttcccaac 6794545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 21353626 - 21353827
Alignment:
Q  1 actaagatgaaagtgttacaaaagagttgcaagaaattagcttataaccttacaaaagaacaaaacataatttctacccattttg--tgtcactcacact 98  Q
    ||||||||||||||| |||||| ||||| ||||||||||||  |  | || ||||| ||||| ||| |||||||||||||||||   || ||||||||||    
T  21353626 actaagatgaaagtgatacaaatgagttacaagaaattagcacaagagctcacaaa-gaacacaacctaatttctacccatttttcatgccactcacact 21353724  T
Q  99 ctcaatgaatcctaagagaaaacacacaaggaagctttttgatccttccaatggtga-aatctcactacctaaggtgtttacaatgttttccaaccctca 197  Q
      ||||||||| |||||||||||||  |||||| ||||| ||||||||||||||||| | |||||||||| || |||||||| |||||| ||||||||||    
T  21353725 tacaatgaatcttaagagaaaacactaaaggaaacttttggatccttccaatggtgacattctcactacccaaagtgtttacgatgtttcccaaccctca 21353824  T
Q  198 aga 200  Q
    |||    
T  21353825 aga 21353827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 50 - 192
Target Start/End: Complemental strand, 25929370 - 25929226
Alignment:
Q  50 ttacaaaagaacaaaacataatttctacccattttg-tgtcactcacactctcaatgaatcctaagagaaaacacacaag--gaagctttttgatccttc 146  Q
    |||||||||||||| || || ||||||| ||||||  |||||| ||||||| |||||||||||||||||||||||| ||   ||||||||||||||||||    
T  25929370 ttacaaaagaacaagacctagtttctactcattttcatgtcacccacactcacaatgaatcctaagagaaaacacaaaaaaagaagctttttgatccttc 25929271  T
Q  147 caatggtgaaatctcactacctaaggtgtttacaatgttttccaac 192  Q
    | ||||||||||||||||||| || |||||||||||||||||||||    
T  25929270 cgatggtgaaatctcactacccaa-gtgtttacaatgttttccaac 25929226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 1 - 186
Target Start/End: Complemental strand, 27974975 - 27974788
Alignment:
Q  1 actaagatgaaagtgttacaaaagagttgcaagaaat-tagcttataaccttacaaaagaacaaaacataatttctacccattttgtgtcactcacactc 99  Q
    |||| ||||||||||||||||| ||||| |||||||  ||||||  || |||||| |||||||| || |||||||||||||||| ||||  | ||  |||    
T  27974975 actatgatgaaagtgttacaaa-gagttacaagaaaaatagcttgcaagcttacacaagaacaagacctaatttctacccattt-gtgtttcccattctc 27974878  T
Q  100 tcaat---gaatcctaa-gagaaaacacacaaggaagctttttgatccttccaatggtgaaatctcactacctaaggtgtttacaatgttt 186  Q
    |||||   ||| ||||| ||||| ||||| |||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||    
T  27974877 tcaataatgaaccctaaagagaagacacaaaaggaagctttt-gatccttccaatggtgaaatctcactacccaaggtgtttacaatgttt 27974788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 103 - 194
Target Start/End: Complemental strand, 39032472 - 39032382
Alignment:
Q  103 atgaatcctaagagaaaacacacaaggaagctttttgatccttccaatggtgaaatctcactacctaaggtgtttacaatgttttccaaccc 194  Q
    ||||| |||||||||| ||||| |||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |||||||    
T  39032472 atgaaccctaagagaagacacaaaaggaagctttt-gatccttccaatggtgaaatctcactacccaaggtgtttacaatgtttaccaaccc 39032382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 49 - 194
Target Start/End: Complemental strand, 27986431 - 27986284
Alignment:
Q  49 cttacaaaagaacaaaacataatttctacccattttgtgtcactcacactctcaatg--aatcctaa--gagaaaacacacaaggaagctttttgatcct 144  Q
    |||||| |||||||| || |||||||||||||||| ||||  | ||| ||||||||   || |||||  ||||| ||||| |||||||||||| ||||||    
T  27986431 cttacacaagaacaagacctaatttctacccattt-gtgtttcccactctctcaatatcaaccctaaaagagaagacacaaaaggaagctttt-gatcct 27986334  T
Q  145 tccaatggtgaaatctcactacctaaggtgtttacaatgttttccaaccc 194  Q
    ||||||||||||||||||||||| |||||||||||||||||| |||||||    
T  27986333 tccaatggtgaaatctcactacccaaggtgtttacaatgtttcccaaccc 27986284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 112 - 194
Target Start/End: Original strand, 27453137 - 27453218
Alignment:
Q  112 aagagaaaacacacaaggaagctttttgatccttccaatggtgaaatctcactacctaaggtgtttacaatgttttccaaccc 194  Q
    ||||||| ||||| |||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |||||||    
T  27453137 aagagaagacacaaaaggaagctttt-gatccttccaatggtgaaatctcactacccaaggtgtttacaatgtttgccaaccc 27453218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 112 - 194
Target Start/End: Original strand, 32143500 - 32143581
Alignment:
Q  112 aagagaaaacacacaaggaagctttttgatccttccaatggtgaaatctcactacctaaggtgtttacaatgttttccaaccc 194  Q
    ||||||| |||||  ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  32143500 aagagaagacacaagaggaagctttt-gatccttccaatggtgaaatctcactacccaaggtgtttacaatgttttccaaccc 32143581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 112 - 186
Target Start/End: Complemental strand, 33386584 - 33386511
Alignment:
Q  112 aagagaaaacacacaaggaagctttttgatccttccaatggtgaaatctcactacctaaggtgtttacaatgttt 186  Q
    ||||||| ||||| |||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||    
T  33386584 aagagaagacacaaaaggaagctttt-gatccttccaatggtgaaatctcactacccaaggtgtttacaatgttt 33386511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 112 - 194
Target Start/End: Complemental strand, 26928508 - 26928427
Alignment:
Q  112 aagagaaaacacacaaggaagctttttgatccttccaatggtgaaatctcactacctaaggtgtttacaatgttttccaaccc 194  Q
    ||||||| |||||  ||||||||||| |||||||||||||||||||||||| |||| |||||||||||||||||| |||||||    
T  26928508 aagagaagacacaagaggaagctttt-gatccttccaatggtgaaatctcattacccaaggtgtttacaatgtttcccaaccc 26928427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 139 - 187
Target Start/End: Original strand, 1306153 - 1306201
Alignment:
Q  139 gatccttccaatggtgaaatctcactacctaaggtgtttacaatgtttt 187  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||    
T  1306153 gatccttccaatggtgaaatctcactacccaaggtgtttacaatgtttt 1306201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 102 - 192
Target Start/End: Complemental strand, 5366244 - 5366152
Alignment:
Q  102 aatgaatcctaagagaaaacacacaaggaagctttttgatccttccaa-tggtgaaatctcactacctaaggtgtttac-aatgttttccaac 192  Q
    ||||||||||||| ||||||||  |||||| ||||| ||||||||||| |  |||||||| |||||| ||||||||||| |||||||||||||    
T  5366244 aatgaatcctaagcgaaaacactaaaggaaacttttcgatccttccaattattgaaatcttactacccaaggtgtttacaaatgttttccaac 5366152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 102 - 191
Target Start/End: Original strand, 21156595 - 21156685
Alignment:
Q  102 aatgaatcctaagagaaaacacacaaggaagctttttgatccttccaatggtgaaatctcactacctaaggtgttta-caatgttttccaa 191  Q
    ||||| ||||||||||||||||  ||| ||||||||||||| || ||||  |||||||||| || |||||||||||| |||||||| ||||    
T  21156595 aatgattcctaagagaaaacactaaagcaagctttttgatcttttcaataatgaaatctcattaactaaggtgtttaccaatgtttcccaa 21156685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 135 - 186
Target Start/End: Original strand, 37725874 - 37725925
Alignment:
Q  135 ttttgatccttccaatggtgaaatctcactacctaaggtgtttacaatgttt 186  Q
    ||||||||||| ||||||||||||||||||| | |||||||||| |||||||    
T  37725874 ttttgatcctttcaatggtgaaatctcactatccaaggtgtttataatgttt 37725925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 84
Target Start/End: Complemental strand, 4386948 - 4386868
Alignment:
Q  3 taagatgaaagtgttacaaaagagttgcaagaaattagcttataaccttacaaaagaacaaaacataatttctacccatttt 84  Q
    |||||| |||||| |||||| | ||| ||||||||||||||| || || ||||| ||||||||| |||||||||| ||||||    
T  4386948 taagataaaagtgatacaaatgggttacaagaaattagcttaaaagctcacaaa-gaacaaaacctaatttctactcatttt 4386868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 145; Significance: 2e-76; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 21801377 - 21801177
Alignment:
Q  1 actaagatgaaagtgttacaaaagagttgcaagaaattagcttataaccttacaaaagaacaaaacataatttctacccattttgtgtcactcacactct 100  Q
    |||||||| ||||||||||||||||||| |||||||||| ||||||| ||||||||||||||| || |||||||||||||||||||||||| ||||||||    
T  21801377 actaagataaaagtgttacaaaagagttacaagaaattatcttataagcttacaaaagaacaagacttaatttctacccattttgtgtcacccacactct 21801278  T
Q  101 caa-tgaatcctaagagaaaacacacaaggaagctttttgatccttccaatggtgaaatctcactacctaaggtgtttacaatgttttccaaccctcaag 199  Q
    ||| |||| |||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| ||||||||||||    
T  21801277 caaatgaaccctaagagaaaacacaaaaggaagctttttgatccttccaatgttgaaatctcactacccaaggtgtttacaatgtttcccaaccctcaag 21801178  T
Q  200 a 200  Q
    |    
T  21801177 a 21801177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 186
Target Start/End: Original strand, 31979577 - 31979762
Alignment:
Q  1 actaagatgaaagtgttacaaaagagttgcaagaaattagcttataaccttacaaaagaacaaaacataatttctaccca-ttttgtgtcactcacactc 99  Q
    ||||||||||||||||| |||||||||| |||||||||| ||||||| ||||||||||||||| || ||||||||||||| ||||||||||| |||||||    
T  31979577 actaagatgaaagtgttgcaaaagagttacaagaaattaacttataagcttacaaaagaacaagacctaatttctacccatttttgtgtcacccacactc 31979676  T
Q  100 tcaatgaatcctaagagaaaacacacaaggaagctttttgatccttccaatggtgaaatctcactacctaaggtgtttacaatgttt 186  Q
    ||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  31979677 tcaatgaatcctaagagaaaacacaaaaggaagc-ttttgatccttccaatggtgaaatctcactacccaaggtgtttacaatgttt 31979762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 5572274 - 5572082
Alignment:
Q  1 actaagatgaaagtgttacaaaagagttgcaagaaattagcttataaccttacaaaagaacaaaacataatttctacccattttgtgtcactcacactct 100  Q
    |||| ||||||||||||||||||||||| |||||||||||||||||| |||||| |||||||| || |||||||||| ||||||||||||| ||||||||    
T  5572274 actatgatgaaagtgttacaaaagagttacaagaaattagcttataagcttacacaagaacaagacctaatttctacgcattttgtgtcacccacactct 5572175  T
Q  101 caatgaatcctaagagaaaacacacaaggaagctttttgatccttccaatggtgaaatctcactacctaaggtgtttacaatgttttccaaccc 194  Q
    |||||||||||||||||||||||| |||||||| |||||||| ||||||| |||||||||||||||| |||||||||||||||||| |||||||    
T  5572174 caatgaatcctaagagaaaacacaaaaggaagc-ttttgatcattccaatagtgaaatctcactacccaaggtgtttacaatgtttcccaaccc 5572082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 4630018 - 4630217
Alignment:
Q  1 actaagatgaaagtgttacaaaagagttgcaagaaattagcttataaccttacaaaagaacaaaacataatttctacccattttgtgtcactcacactct 100  Q
    ||||||||||||||||||||||| |||| |||||||||| ||||||| ||||||||||||||| || ||||||||||| |||||||||||| || |||||    
T  4630018 actaagatgaaagtgttacaaaatagttacaagaaattaacttataagcttacaaaagaacaagacctaatttctacctattttgtgtcacccaaactct 4630117  T
Q  101 c-aatgaatcctaagagaaaacacacaaggaagctttttgatccttccaatggtgaaatctcactacctaaggtgtttacaatgttttccaaccctcaag 199  Q
    | ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| || ||||||| ||||||| ||||||||||||    
T  4630118 caaatgaatcctaagagaaaacacaaaaggaagc-ttttgatccttccaatggtgaaatctcactacccaatgtgtttaaaatgtttcccaaccctcaag 4630216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 18232909 - 18233101
Alignment:
Q  1 actaagatgaaagtgttacaaaagagttgcaagaaattagcttataaccttacaaaagaacaaaacataatttctacccattttgtgtcactcacactct 100  Q
    |||| ||||||||||||||||||||||| |||||||| ||||||||| |||||| |||||||| || |||||||||||||||||||||||| ||||||||    
T  18232909 actatgatgaaagtgttacaaaagagttacaagaaatcagcttataagcttacacaagaacaagacctaatttctacccattttgtgtcacccacactct 18233008  T
Q  101 c---aatgaatcctaagagaaaacacacaaggaagctttttgatccttccaatggtgaaatctcactacctaaggtgtttacaatgttttccaa 191  Q
    |   ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||    
T  18233009 caataatgaatcctaagagaaaacacaaaaggaagc-ttttgatccttccaatggtgaaatctcactacccaaggtgtttacaatgtttcccaa 18233101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 1 - 174
Target Start/End: Complemental strand, 10077198 - 10077027
Alignment:
Q  1 actaagatgaaagtgttacaaaagagttgcaagaaattagcttataaccttacaaaagaacaaaacataatttctacccattttgtgtcactcacactct 100  Q
    |||| |||||||||||||||||| |||| |||||||||||||||||| ||||||||||||||| || |||||||||||||||||||||||| ||||  ||    
T  10077198 actatgatgaaagtgttacaaaaaagttacaagaaattagcttataagcttacaaaagaacaagacctaatttctacccattttgtgtcacccaca--ct 10077101  T
Q  101 caatgaatcctaagagaaaacacacaaggaagctttttgatccttccaatggtgaaatctcactacctaaggtg 174  Q
    ||||||||||||||| |||||||| |||||||||||||||||||||||||||| ||||||||||||| ||||||    
T  10077100 caatgaatcctaagataaaacacaaaaggaagctttttgatccttccaatggtcaaatctcactacccaaggtg 10077027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 24436004 - 24435812
Alignment:
Q  1 actaagatgaaagtgttacaaaagagttgcaagaaattagcttataaccttacaaaagaacaaaacataatttctacccattttg-tgtcactcacactc 99  Q
    |||| ||||||| ||||||||| || || |||||||||||||||||| ||||||||| ||||| || |||||||||||||||||  | |||| |||| ||    
T  24436004 actaggatgaaaatgttacaaatgaattacaagaaattagcttataagcttacaaaaaaacaagacctaatttctacccatttttatatcacccacattc 24435905  T
Q  100 tcaatgaatcctaagagaaaacacacaaggaagctttttgatccttccaatggtgaaatctcactacctaaggtgtttacaatgttttccaac 192  Q
      ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||    
T  24435904 ataatgaatcctaagagaaaacacaaaaggaagctttttgatccttccaatggtgaaatctcactacccaaggtgtttacaatgtttcccaac 24435812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 22963763 - 22963954
Alignment:
Q  1 actaagatgaaagtgttacaaaagagttgcaagaaattagcttataaccttacaaaagaacaaaacataatttctacccattttgtgtcactcacactct 100  Q
    |||| ||||||||||||||||||||||| ||||||||||||||||||||||||| || |||||  | ||||||||||||||||| |||||||||||||||    
T  22963763 actatgatgaaagtgttacaaaagagttacaagaaattagcttataaccttacacaa-aacaagccgtaatttctacccattttttgtcactcacactct 22963861  T
Q  101 caat---gaatcctaagagaaaacacacaaggaagctttttgatccttccaatggtgaaatctcactacctaaggtgtttacaatgttttccaa 191  Q
    ||||   ||||||||| |||||||||| | ||||  |||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||    
T  22963862 caataatgaatcctaaaagaaaacacaaagggaaa-tttttgatccttccaatggtgaaatctcactacccaaggtgtttacaatgtttcccaa 22963954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 23824630 - 23824439
Alignment:
Q  1 actaagatgaaagtgttacaaaagagttgcaagaaattagcttataaccttacaaaagaacaaaacataatttctacccattttgtgtcactcacactct 100  Q
    |||| ||||||||||||||||||||||| ||||||||||||||||||||||||| || |||||  | ||||||||||||||||| |||||||||||||||    
T  23824630 actatgatgaaagtgttacaaaagagttacaagaaattagcttataaccttacacaa-aacaagccgtaatttctacccattttttgtcactcacactct 23824532  T
Q  101 caat---gaatcctaagagaaaacacacaaggaagctttttgatccttccaatggtgaaatctcactacctaaggtgtttacaatgttttccaa 191  Q
    ||||   ||||||||| |||||||||| | ||||  |||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||    
T  23824531 caataatgaatcctaaaagaaaacacaaagggaaa-tttttgatccttccaatggtgaaatctcactacccaaggtgtttacaatgtttcccaa 23824439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 1 - 186
Target Start/End: Complemental strand, 31086506 - 31086321
Alignment:
Q  1 actaagatgaaagtgttacaaaagagttgcaagaaattagcttataaccttacaaaagaacaaaacataatttctacccattttgtgtcactcacactc- 99  Q
    |||| ||||||||||||||||| ||||| |||||||||||||||||| |||||| |||| ||| || |||||||||||||||||||||||| |||||||     
T  31086506 actatgatgaaagtgttacaaaggagttacaagaaattagcttataagcttacacaagagcaagacctaatttctacccattttgtgtcacccacactca 31086407  T
Q  100 tcaatgaatcctaagagaaaacacacaaggaagctttttgatccttccaatggtgaaatctcactacctaaggtgtttacaatgttt 186  Q
      ||||||||||||||||||||| | || ||||| ||||||||||||||||||||||||||||| ||| ||||||||||||||||||    
T  31086406 ataatgaatcctaagagaaaacataaaaagaagc-ttttgatccttccaatggtgaaatctcacaacccaaggtgtttacaatgttt 31086321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 21 - 194
Target Start/End: Original strand, 31936660 - 31936833
Alignment:
Q  21 aaagagttgcaagaaattagcttataaccttacaaaagaacaaaacataatttctacccattttg--tgtcactcacactctcaatgaatcctaagagaa 118  Q
    |||| ||| ||||||| ||||||  || |||||| ||||||||| | |||||||||||||||||   | |||| ||||||||||||||||||||||||||    
T  31936660 aaagtgttacaagaaaatagcttgcaagcttacacaagaacaaatcctaatttctacccatttttcatatcacccacactctcaatgaatcctaagagaa 31936759  T
Q  119 aacacacaaggaagctttttgatccttccaatggtgaaatctcactacctaaggtgtttacaatgttttccaaccc 194  Q
    |||||| |  ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||    
T  31936760 aacacaaa--gaagctttttgatccttccaatggtgaaatctcactacccaaggtgtttacaatgtttcccaaccc 31936833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 55 - 200
Target Start/End: Original strand, 14521790 - 14521938
Alignment:
Q  55 aaagaacaaaacataatttctacccattttg--tgtcactcacactctcaatgaatcctaagagaaaacacacaaggaagctttttgatccttccaatgg 152  Q
    |||||||| ||| |||||||||| ||||||   |||||| |||||||||||| |||||||||||||||||   ||||||| ||||| |||||||||||||    
T  14521790 aaagaacacaacctaatttctacacatttttcatgtcacccacactctcaataaatcctaagagaaaacattaaaggaagattttttatccttccaatgg 14521889  T
Q  153 tgaaa-tctcactacctaaggtgtttacaatgttttccaaccctcaaga 200  Q
    ||||| |||||||||| |||||||||||||||||| |||||||||||||    
T  14521890 tgaaattctcactacccaaggtgtttacaatgtttcccaaccctcaaga 14521938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 21 - 194
Target Start/End: Complemental strand, 5017493 - 5017335
Alignment:
Q  21 aaagagttgcaagaaattagcttataaccttacaaaagaacaaaacataatttctacccattttgtgtcactcacactctcaatgaatcctaagagaaaa 120  Q
    |||| ||| |||||||||||||||||| |||||| |||||||| || |||||||||||||||||||||||| |||||||||||| |||       |||      
T  5017493 aaagtgttacaagaaattagcttataagcttacacaagaacaagacctaatttctacccattttgtgtcacccacactctcaat-aat-------gaa-- 5017404  T
Q  121 cacacaaggaagctttttgatccttccaatggtgaaatctcactacctaaggtgtttacaatgttttccaaccc 194  Q
         |||||||||||| |||||||||||||||||||||||| |||| |||||||||||||||||| |||||||    
T  5017403 -----aaggaagcttttcgatccttccaatggtgaaatctcattacccaaggtgtttacaatgtttcccaaccc 5017335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 5757511 - 5757317
Alignment:
Q  1 actaagatgaaagtgttacaaaagagttgcaagaaattagcttataaccttacaaaagaacaaaacataatttctacccattt-tgtgtcactcacactc 99  Q
    |||| ||||||||||||||||| ||||| ||||||| ||||||  || |||| | |||||||| || |||||||||||||||| |||  ||||| | |||    
T  5757511 actatgatgaaagtgttacaaa-gagttacaagaaaatagcttgcaagcttatacaagaacaagacctaatttctacccatttgtgttccactctctctc 5757413  T
Q  100 tc-aatgaatcctaa-gagaaaacacacaaggaagctttttgatccttccaatggtgaaatctcactacctaaggtgtttacaatgttttccaaccc 194  Q
       |||||| ||||| ||||| ||||  |||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |||||||    
T  5757412 aataatgaaccctaaagagaagacacggaaggaagctttt-gatccttccaatggtgaaatctcactacccaaggtgtttacaatgtttcccaaccc 5757317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 186
Target Start/End: Original strand, 21356100 - 21356287
Alignment:
Q  1 actaagatgaaagtgttacaaaagagttgcaagaaat-tagcttataaccttacaaaagaacaaaacataatttctacccattttgtgtcactcacactc 99  Q
    |||| |||||||||||||| || ||||| |||||||  || |||  || |||||| |||||||| || |||||||||||||||| ||||  ||||| |||    
T  21356100 actatgatgaaagtgttactaa-gagttacaagaaaaataacttgcaagcttacacaagaacaagacctaatttctacccattt-gtgtttctcactctc 21356197  T
Q  100 tcaat---gaatcctaa-gagaaaacacacaaggaagctttttgatccttccaatggtgaaatctcactacctaaggtgtttacaatgttt 186  Q
    |||||   ||| ||||| || || ||||| |||||||||||| ||| ||||||||| ||||||||||||||| ||||||||||||||||||    
T  21356198 tcaataatgaaccctaaagaaaagacacaaaaggaagctttt-gattcttccaatgatgaaatctcactacccaaggtgtttacaatgttt 21356287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 103 - 186
Target Start/End: Complemental strand, 31076866 - 31076783
Alignment:
Q  103 atgaatcctaagagaaaacacacaaggaagctttttgatccttccaatggtgaaatctcactacctaaggtgtttacaatgttt 186  Q
    |||||||||||||||||||||  ||| ||  ||||||||| ||||||||||||||||||| |||||||||||||||||| ||||    
T  31076866 atgaatcctaagagaaaacactaaagaaatttttttgatcattccaatggtgaaatctcaatacctaaggtgtttacaaagttt 31076783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 112 - 194
Target Start/End: Original strand, 22709187 - 22709268
Alignment:
Q  112 aagagaaaacacacaaggaagctttttgatccttccaatggtgaaatctcactacctaaggtgtttacaatgttttccaaccc 194  Q
    ||||||| |||||  |||||| |||||||||||||||||||||||||||||||| | |||||||||||||||||| |||||||    
T  22709187 aagagaagacacaagaggaag-tttttgatccttccaatggtgaaatctcactatccaaggtgtttacaatgtttcccaaccc 22709268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 55 - 193
Target Start/End: Complemental strand, 33721539 - 33721398
Alignment:
Q  55 aaagaacaaaacataatttctacccattttgt--gtcactcacactc-tcaatgaatcctaagagaaaacacacaaggaagctttttgatccttccaatg 151  Q
    |||||||||||| ||||||   |||||||| |  ||||| ||||||| | ||||||||||||||||||||||  |||| |||||||| ||| |||||||     
T  33721539 aaagaacaaaacctaattttcccccattttttaggtcacacacactcctaaatgaatcctaagagaaaacactaaagggagctttttcatcattccaata 33721440  T
Q  152 gtgaaatctcactacctaaggtgtttac-aatgttttccaacc 193  Q
     ||||||||||||| | ||||||||||| ||||||| ||||||    
T  33721439 atgaaatctcacta-caaaggtgtttacaaatgtttcccaacc 33721398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 25 - 193
Target Start/End: Original strand, 99244 - 99413
Alignment:
Q  25 agttgcaagaaattagcttataaccttacaaaagaacaaaacataatttctacccattttgt-gtcactcacactctcaatgaatcctaagagaaaacac 123  Q
    |||| ||||||||||||||| || || ||| | |||||||   |||||||||||||||||   || |||||||||| |||||||||||| ||||||| ||    
T  99244 agttacaagaaattagcttagaagctcacaga-gaacaaactttaatttctacccatttttaagttactcacactcacaatgaatcctatgagaaaatac 99342  T
Q  124 acaaggaagctttttgatccttccaatggtgaaatctcactacctaaggtgtttaca-atgttttccaacc 193  Q
      ||||||||||||| ||| || |  |  ||| || | ||||||||||||||||||| |||||||||||||    
T  99343 caaaggaagctttttaatcatttctctaatgagatataactacctaaggtgtttacagatgttttccaacc 99413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 97 - 186
Target Start/End: Original strand, 5385756 - 5385845
Alignment:
Q  97 ctctcaatgaatcctaagagaaaacacacaaggaagctttttgatccttccaatggtgaaatctcactacctaaggtgtttacaatgttt 186  Q
    |||| ||| ||||| ||||| ||||||  ||| ||||||||| ||||||| ||||||||||||||||||| ||||||| || ||||||||    
T  5385756 ctcttaataaatcccaagaggaaacactaaagaaagcttttttatccttctaatggtgaaatctcactacttaaggtgattgcaatgttt 5385845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 139 - 187
Target Start/End: Complemental strand, 5674660 - 5674611
Alignment:
Q  139 gatccttccaatggtgaaatc-tcactacctaaggtgtttacaatgtttt 187  Q
    |||||||||||||||||| || |||||||| |||||| ||||||||||||    
T  5674660 gatccttccaatggtgaactcctcactacccaaggtgattacaatgtttt 5674611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 141; Significance: 4e-74; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 6127285 - 6127487
Alignment:
Q  1 actaagatgaaagtgttacaaaagagttgcaagaaattagcttataaccttacaaaagaacaaaacataatttctacccattttgtgtcactcacactct 100  Q
    |||| ||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| || |||||||||||||||||||||||| ||||||||    
T  6127285 actatgatgaaagtgttacaaaagagttacaagaaattagcttataagcttacaaaagaacaagacctaatttctacccattttgtgtcacccacactct 6127384  T
Q  101 c---aatgaatcctaagagaaaacacacaaggaagctttttgatccttccaatggtgaaatctcactacctaaggtgtttacaatgttttccaaccctca 197  Q
    |   ||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| ||  |||||||||||||| ||||||||||    
T  6127385 caataatgaatcctaagagaaaacacaaaagaaagctttttgatccttccaatggtgaaatctcactacccaaaatgtttacaatgtttcccaaccctca 6127484  T
Q  198 aga 200  Q
    |||    
T  6127485 aga 6127487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 127; E-Value: 9e-66
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 26403263 - 26403062
Alignment:
Q  1 actaagatgaaagtgttacaaaagagttgcaagaaattagcttataaccttacaaaagaacaaaacataatttctacccattttgtgtcactcacactct 100  Q
    |||| |||||||||||||||||||||||  | |||||||||||| || ||| || |||||||| || |||||||||||||||||||||||||||| |||     
T  26403263 actatgatgaaagtgttacaaaagagttataggaaattagcttacaagcttgcacaagaacaagacctaatttctacccattttgtgtcactcactctca 26403164  T
Q  101 caat--gaatcctaagagaaaacacacaaggaagctttttgatccttccaatggtgaaatctcactacctaaggtgtttacaatgttttccaaccctcaa 198  Q
    ||||  ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||    
T  26403163 caatatgaatcataagagaaaacacaaaaggaagctttttgatccttccaatggtgaaatctcactacccaaggtgtttacaatgtttcccaaccctcaa 26403064  T
Q  199 ga 200  Q
    ||    
T  26403063 ga 26403062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 21 - 194
Target Start/End: Complemental strand, 4696620 - 4696447
Alignment:
Q  21 aaagagttgcaagaaattagcttataaccttacaaaagaacaaaacataatttctacccattttgtgtcactcacactctcaatgaatcctaagagaaaa 120  Q
    |||||||| |||||||||||||||||| |||||  |||||||| || |||||||||||||||||||||||| |||||||||| |||||||||||||||||    
T  4696620 aaagagttacaagaaattagcttataagcttacgcaagaacaagacctaatttctacccattttgtgtcacccacactctcattgaatcctaagagaaaa 4696521  T
Q  121 cacacaaggaagctttttgatccttccaatggtgaaatctcactacctaaggtgtttacaatgttttccaaccc 194  Q
    |||| ||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| |||||||    
T  4696520 cacaaaaggaagctttttgatctttccaatggtgaaatctcactacccaaggtgtttacaatgtttcccaaccc 4696447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 6 - 194
Target Start/End: Complemental strand, 5702511 - 5702319
Alignment:
Q  6 gatgaaagtgttacaaaagagttgcaagaaattagcttataaccttacaaaagaacaaaacataatttctacccattttgtgtcactcacactctc---a 102  Q
    ||||||||||||||||||||||| |||||||||||||||||| |||||| |||| |||||| |||||||||||||||||| ||||| |||||||||   |    
T  5702511 gatgaaagtgttacaaaagagttacaagaaattagcttataagcttacacaagagcaaaacctaatttctacccattttgagtcacccacactctcaata 5702412  T
Q  103 atgaatcctaagag-aaaacacacaaggaagctttttgatccttccaatggtgaaatctcactacctaaggtgtttacaatgttttccaaccc 194  Q
    |||||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| ||| |||||||    
T  5702411 atgaatcctaagagaaaaacacaaaaggaagctttttgatcattccaatggtgaaatctcactacccaaggtgtttacaatatttcccaaccc 5702319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 23799610 - 23799415
Alignment:
Q  1 actaagatgaaagtgttacaaaagagttgcaagaaattagcttataaccttacaaaagaacaaaacataatttctacccattttgtgtcactcacactct 100  Q
    |||| ||||||||||||||||||||||| ||||||||||||||| || |||||| |||||||| || |||||||||||||||||||||||| |||  ||     
T  23799610 actatgatgaaagtgttacaaaagagttacaagaaattagcttacaagcttacacaagaacaagacctaatttctacccattttgtgtcacccactgtca 23799511  T
Q  101 caat--gaatcctaagagaaaacacacaaggaagctttttgatccttccaatggtgaaatctcactacctaaggtgtttacaatgttttccaaccc 194  Q
    ||||  |||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| ||||  |||||||||||||||||  |||||||    
T  23799510 caatatgaatcctaagggaaaacacaaaaggaagctttttgatccttccaatggtgaaatctccctactcaaggtgtttacaatgttccccaaccc 23799415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 1 - 192
Target Start/End: Original strand, 3051184 - 3051376
Alignment:
Q  1 actaagatgaaagtgttacaaaagagttgcaagaaattagcttataaccttacaaaagaacaaaacataatttctacccattttg--tgtcactcacact 98  Q
    ||||||||||||||| |||||| ||||| |||||||||||| ||  | || ||||| ||||||||| |||||||||||||||||   ||||||| |||||    
T  3051184 actaagatgaaagtgatacaaatgagttacaagaaattagcataagagctcacaaa-gaacaaaacttaatttctacccatttttcatgtcacttacact 3051282  T
Q  99 ctcaatgaatcctaagagaaaacacacaaggaagctttttgatccttccaatggtgaaatctcactacctaaggtgtttacaatgttttccaac 192  Q
    ||||||||||||||||||||| |||| ||||||||||||||||| |||||||||||||||||||||||| ||| |||||||||||||| |||||    
T  3051283 ctcaatgaatcctaagagaaagcacaaaaggaagctttttgatctttccaatggtgaaatctcactacccaagatgtttacaatgtttcccaac 3051376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 182
Target Start/End: Complemental strand, 19752427 - 19752245
Alignment:
Q  1 actaagatgaaagtgttacaaaagagttgcaagaaat-tagcttataaccttacaaaagaacaaaacataatttctacccattttg--tgtcactcacac 97  Q
    |||||||||||||||||||||  ||||| |||||||  ||||||  || |||||| ||||||||  | |||||||||||||||||   | |||| |||||    
T  19752427 actaagatgaaagtgttacaat-gagttacaagaaaaatagcttgcaagcttacacaagaacaagtcctaatttctacccatttttcatatcacccacac 19752329  T
Q  98 tctcaatgaatcctaagagaaaacacacaaggaagctttttgatccttccaatggtgaaatctcactacctaaggtgtttacaat 182  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||    
T  19752328 tctcaatgaatcctaagagaaaacaca-aaggaagctttttgatccttccaatgatgaaatctcactacccaaggtgtttacaat 19752245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 194
Target Start/End: Original strand, 4456092 - 4456286
Alignment:
Q  1 actaagatgaaagtgttacaaaagagttgcaagaaattagcttataaccttacaaaagaacaaaacataatttctacccattttgtgtcactcacactct 100  Q
    |||| ||||||||||||||||| ||||| ||||||| |||||   || |||||| |||||||| ||||||||||||||||||| |||| || ||| ||||    
T  4456092 actatgatgaaagtgttacaaa-gagttacaagaaaatagctggcaagcttacacaagaacaagacataatttctacccattt-gtgttacccactctct 4456189  T
Q  101 caatga---atcctaa-gagaaaacacacaaggaagctttttgatccttccaatggtgaaatctcactacctaaggtgtttacaatgttttccaaccc 194  Q
    ||||||   | ||||| ||||| ||||| |||||||||||| |||||||| |||||||||||||||||||| |||||||||||||||||| |||||||    
T  4456190 caatgatgaaccctaaagagaagacacaaaaggaagctttt-gatccttctaatggtgaaatctcactacccaaggtgtttacaatgtttcccaaccc 4456286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 194
Target Start/End: Original strand, 7412405 - 7412598
Alignment:
Q  1 actaagatgaaagtgttacaaaagagttgcaagaaattagcttataaccttacaaaagaacaaaacataatttctacccattttgtgtcactcacactct 100  Q
    |||| ||||||||||||||||| ||||| ||||||| || |||  || |||||| |||||||| || |||||||||||||||| ||||  | ||| ||||    
T  7412405 actatgatgaaagtgttacaaa-gagttacaagaaaataacttgcaagcttacacaagaacaagacctaatttctacccattt-gtgtttcccactctct 7412502  T
Q  101 caat---gaatcctaagagaaaacacacaaggaagctttttgatccttccaatggtgaaatctcactacctaaggtgtttacaatgttttccaaccc 194  Q
    ||||   ||| |||||||||| ||| | |||||||||||| ||||||| ||||||||||||||||||||| |||||||||||||||||| |||||||    
T  7412503 caataatgaaccctaagagaagacataaaaggaagctttt-gatcctttcaatggtgaaatctcactacccaaggtgtttacaatgtttcccaaccc 7412598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 7493206 - 7493015
Alignment:
Q  1 actaagatgaaagtgttacaaaagagttgcaagaaattagcttataaccttacaaaagaacaaaacataatttctacccattttgt--gtcactcacact 98  Q
    ||||||||||||||| ||||||  ||||  ||||||||| | || || || ||| | ||||||||| |||||||||||  ||||    ||||| ||||||    
T  7493206 actaagatgaaagtgatacaaagaagttataagaaattaacataaaagctcacaca-gaacaaaacctaatttctacctgtttttcaagtcacccacact 7493108  T
Q  99 ctcaatgaatcctaagagaaaacacacaaggaagctttttgatccttccaatggtgaaatctcactacctaaggtgtttacaatgttttccaa 191  Q
    |||||| |||||||||| |||||||  ||||||||||||||||||||| ||| |||||||||||||||| |||||||||||||||||| ||||    
T  7493107 ctcaataaatcctaagaaaaaacactaaaggaagctttttgatccttctaattgtgaaatctcactacccaaggtgtttacaatgtttcccaa 7493015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 87 - 193
Target Start/End: Original strand, 28307713 - 28307819
Alignment:
Q  87 gtcactcacactctcaatgaatcctaagagaaaacacacaaggaagctttttgatccttccaatggtgaaatctcactacctaaggtgtttacaatgttt 186  Q
    ||||| |||||||||| |||||||||| |||||||||| ||| ||||||||| ||||||||||| |||||||||||||||| |||||||| |||||||||    
T  28307713 gtcacccacactctcactgaatcctaaaagaaaacacaaaagaaagcttttttatccttccaattgtgaaatctcactacccaaggtgttaacaatgttt 28307812  T
Q  187 tccaacc 193  Q
     ||||||    
T  28307813 cccaacc 28307819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 5990594 - 5990400
Alignment:
Q  1 actaagatgaaagtgttacaaaagagttgcaagaaattagcttataaccttacaaaagaacaaaacataatttctacccattttgt--gtcactcacact 98  Q
    ||||||||||||||| ||||||   ||| ||||||||||||||| || || ||||| |||||  || | ||||  |||||||||    ||||| ||||||    
T  5990594 actaagatgaaagtgatacaaagatgttacaagaaattagcttaaaagctcacaaa-gaacacgacctcattttcacccatttttcaagtcacccacact 5990496  T
Q  99 ctcaatgaatcctaagagaaaacacacaaggaagctttttgatccttccaatggtgaaatctcactacctaaggtgtttacaatgttttccaaccc 194  Q
     ||||||||||||||||||||||||  ||| ||||||||||| | ||| |||||||||||||||| | | ||| || ||||||||||| |||||||    
T  5990495 ttcaatgaatcctaagagaaaacactaaagaaagctttttgacctttcgaatggtgaaatctcacaaaccaagatgattacaatgtttcccaaccc 5990400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 19175787 - 19175596
Alignment:
Q  1 actaagatgaaagtgttacaaaagagttgcaagaaat-tagcttataaccttacaaaagaacaaaacataatttctacccattttgtgtcactcacactc 99  Q
    |||| ||||||||||||||||| ||||| |||||||  |||| |  || |||||| |||||||| || ||| |||||| ||||| ||||  | ||| |||    
T  19175787 actatgatgaaagtgttacaaa-gagttacaagaaaaatagcctgcaagcttacacaagaacaagacctaacttctacacattt-gtgtttcccactctc 19175690  T
Q  100 tcaatga---atcctaagagaaaacacacaaggaagctttttgatccttccaatggtgaaatctcactacctaaggtgtttacaatgttttccaa 191  Q
    |||||||   | |||||||||| ||||| |||||| ||||| |||||||||||| |||||||||||||||| |||||||||||||||||| ||||    
T  19175689 tcaatgatgaaccctaagagaagacacaaaaggaaactttt-gatccttccaatagtgaaatctcactacccaaggtgtttacaatgtttcccaa 19175596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 129 - 194
Target Start/End: Complemental strand, 9054324 - 9054259
Alignment:
Q  129 gaagctttttgatccttccaatggtgaaatctcactacctaaggtgtttacaatgttttccaaccc 194  Q
    ||||||||||||||||||||||||||||||||||||||| |||||| ||| |||||||||||||||    
T  9054324 gaagctttttgatccttccaatggtgaaatctcactacccaaggtgattataatgttttccaaccc 9054259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 9054870 - 9054748
Alignment:
Q  1 actaagatgaaagtgttacaaaagagttgcaagaaattagcttataaccttacaaaagaacaaaacataatttctacccattttgt--gtcactcacact 98  Q
    ||||||||||||||| ||||||   ||| ||||||||||||||| || |  ||||| ||||||||  |||||||||||||||||    ||||||||||||    
T  9054870 actaagatgaaagtgatacaaagtggttacaagaaattagcttaaaagcgcacaaa-gaacaaaatctaatttctacccatttttcaagtcactcacact 9054772  T
Q  99 ctcaatgaatcctaagagaaaaca 122  Q
    ||||||||||||||||||||||||    
T  9054771 ctcaatgaatcctaagagaaaaca 9054748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 112 - 187
Target Start/End: Original strand, 26288069 - 26288143
Alignment:
Q  112 aagagaaaacacacaaggaagctttttgatccttccaatggtgaaatctcactacctaaggtgtttacaatgtttt 187  Q
    ||||||| |||||  ||||||||||  ||||||||||||||||||||||||||||| |||||||||||||||||||    
T  26288069 aagagaagacacaagaggaagcttta-gatccttccaatggtgaaatctcactacccaaggtgtttacaatgtttt 26288143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 112 - 187
Target Start/End: Original strand, 26301326 - 26301400
Alignment:
Q  112 aagagaaaacacacaaggaagctttttgatccttccaatggtgaaatctcactacctaaggtgtttacaatgtttt 187  Q
    ||||||| |||||  ||||||||||  ||||||||||||||||||||||||||||| |||||||||||||||||||    
T  26301326 aagagaagacacaagaggaagcttta-gatccttccaatggtgaaatctcactacccaaggtgtttacaatgtttt 26301400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 112 - 187
Target Start/End: Original strand, 26313320 - 26313394
Alignment:
Q  112 aagagaaaacacacaaggaagctttttgatccttccaatggtgaaatctcactacctaaggtgtttacaatgtttt 187  Q
    ||||||| |||||  ||||||||||  ||||||||||||||||||||||||||||| |||||||||||||||||||    
T  26313320 aagagaagacacaagaggaagcttta-gatccttccaatggtgaaatctcactacccaaggtgtttacaatgtttt 26313394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 94 - 182
Target Start/End: Complemental strand, 13204722 - 13204634
Alignment:
Q  94 acactctcaatgaatcctaagagaaaacacacaaggaagctttttgatccttccaatggtgaaatctcactacctaaggtgtttacaat 182  Q
    ||||||||||||||||||| ||||||| |   ||  |||||||||||| || |||| ||||||||||||||||| ||||||||||||||    
T  13204722 acactctcaatgaatcctatgagaaaatattaaataaagctttttgattctcccaacggtgaaatctcactacccaaggtgtttacaat 13204634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 139 - 187
Target Start/End: Complemental strand, 31071121 - 31071073
Alignment:
Q  139 gatccttccaatggtgaaatctcactacctaaggtgtttacaatgtttt 187  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||    
T  31071121 gatccttccaatggtgaaatctcactacccaaggtgtttacaatgtttt 31071073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 139 - 187
Target Start/End: Complemental strand, 1261846 - 1261798
Alignment:
Q  139 gatccttccaatggtgaaatctcactacctaaggtgtttacaatgtttt 187  Q
    ||||||||||||||||||||||||||||| |||||| ||||||||||||    
T  1261846 gatccttccaatggtgaaatctcactacccaaggtgattacaatgtttt 1261798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 10 - 84
Target Start/End: Complemental strand, 30291695 - 30291620
Alignment:
Q  10 aaagtgttacaaaagagttgcaagaaattagctt--ataaccttacaaaagaacaaaacataatttctacccatttt 84  Q
    |||||| |||||| ||||| ||||||||||||||  | || || || |||||||||||| |||||||||||||||||    
T  30291695 aaagtgatacaaatgagttacaagaaattagcttcaacaagctcac-aaagaacaaaacctaatttctacccatttt 30291620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 63 - 123
Target Start/End: Complemental strand, 31513303 - 31513242
Alignment:
Q  63 aaacataatttctacccatttt-gtgtcactcacactctcaatgaatcctaagagaaaacac 123  Q
    |||| ||||||||||| ||||| | ||||  ||||||| |||||||||||||||||||||||    
T  31513303 aaacctaatttctacctattttcgagtcatccacactcacaatgaatcctaagagaaaacac 31513242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 138; Significance: 3e-72; HSPs: 29)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 2647729 - 2647536
Alignment:
Q  1 actaagatgaaagtgttacaaaagagttgcaagaaattagcttataaccttacaaaagaacaaaacataatttctacccattttgtgtcactcacactct 100  Q
    |||| ||||||||||||||||||||||| |||||||||||||||||| |||||| |||||||| || |||||||||||||||||||||||| ||||||||    
T  2647729 actatgatgaaagtgttacaaaagagttacaagaaattagcttataagcttacacaagaacaagacctaatttctacccattttgtgtcacccacactct 2647630  T
Q  101 caatgaatcctaagagaaaacacacaaggaagctttttgatccttccaatggtgaaatctcactacctaaggtgtttacaatgttttccaaccc 194  Q
    |||||||||||||||||||||||| || |||| |||||||||||||||||||||||||||||||||| |||||| |||| |||||| |||||||    
T  2647629 caatgaatcctaagagaaaacacaaaatgaagttttttgatccttccaatggtgaaatctcactacccaaggtgcttaccatgtttcccaaccc 2647536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 4796700 - 4796507
Alignment:
Q  1 actaagatgaaagtgttacaaaagagttgcaagaaattagcttataaccttacaaaagaacaaaacataatttctacccattttgtgtcactcacactct 100  Q
    |||| ||||||| ||||||||||||||| |||||||||||||||||| |||||| |||||||| || | |||| |||||||||||||||||  ||| |||    
T  4796700 actatgatgaaattgttacaaaagagttacaagaaattagcttataagcttacacaagaacaagacctcatttatacccattttgtgtcacctacattct 4796601  T
Q  101 caatgaatcctaagagaaaacacacaaggaagctttttgatccttccaatggtgaaatctcactacctaaggtgtttacaatgttttccaaccc 194  Q
    |||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  4796600 caatgaatcctaagagaaaacacaaaaagaagctttttgatccttccaatggtgaaatctcactacccaaggtgtttacaatgttttccaaccc 4796507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 1 - 182
Target Start/End: Original strand, 56011 - 56195
Alignment:
Q  1 actaagatgaaagtgttacaaaagagttgcaagaaattagcttataaccttacaaaagaacaaaacataatttctacccattttgtgtcactcacactct 100  Q
    |||| ||||||||||||||||||||||| |||||||||||||||||| |||||| |||||||| || |||||||||||||||||||||||| ||||||||    
T  56011 actatgatgaaagtgttacaaaagagttacaagaaattagcttataagcttacacaagaacaagacctaatttctacccattttgtgtcacccacactct 56110  T
Q  101 c---aatgaatcctaagagaaaacacacaaggaagctttttgatccttccaatggtgaaatctcactacctaaggtgtttacaat 182  Q
    |   ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  56111 caataatgaatcctaagagaaaacacaaaaagaagctttttgatccttccaatggtgaaatctcactacccaaggtgtttacaat 56195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 1 - 186
Target Start/End: Complemental strand, 33332483 - 33332297
Alignment:
Q  1 actaagatgaaagtgttacaaaagagttgcaagaaattagcttataaccttacaaaagaacaaaacataatttctacccatttt-gtgtcactcacactc 99  Q
    |||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| || |||||||||| |||||| || |||| |||||||    
T  33332483 actaagatgaaagtgttacaaaagagttacaagaaattagcttataagcttacaaaagaacaagacctaatttctactcatttttgtatcacgcacactc 33332384  T
Q  100 tcaatgaatcctaagagaaaacacacaaggaagctttttgatccttccaatggtgaaatctcactacctaaggtgtttacaatgttt 186  Q
    ||||||| ||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||    
T  33332383 tcaatgattcctaagagaaaacacaaagggaagctttttgatccttccaatggtgaaatctcactacccaagatgtttacaatgttt 33332297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 1 - 194
Target Start/End: Original strand, 49091725 - 49091921
Alignment:
Q  1 actaagatgaaagtgttacaaaagagttgcaagaaattagcttataaccttacaaaagaacaaaacataatttctacccattttgtgtcactcacactct 100  Q
    |||| ||||||||||||||||||||||| |||||||||| ||||||| |||||| |||||||| || ||||||||||||||| |||||||| ||||||||    
T  49091725 actatgatgaaagtgttacaaaagagttacaagaaattaccttataagcttacacaagaacaagacctaatttctacccattctgtgtcacccacactct 49091824  T
Q  101 c---aatgaatcctaagagaaaacacacaaggaagctttttgatccttccaatggtgaaatctcactacctaaggtgtttacaatgttttccaaccc 194  Q
    |   ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| |||||||    
T  49091825 ccataatgaatcctaagagaaaacacaaaaggaagctttttgatccttccaatggtgaaatctcactacccaaggtgttttcaatgtttcccaaccc 49091921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 29159867 - 29160069
Alignment:
Q  1 actaagatgaaagtgttacaaaagagttgcaagaaattagcttataaccttacaaaagaacaaaacataatttctacccatttt-gtgtcactcacactc 99  Q
    |||| ||||||||||||||||||||||| ||||||||||||||| || |||||| |||||||| || ||||||||||||||||| ||||||| ||| |||    
T  29159867 actatgatgaaagtgttacaaaagagttacaagaaattagcttacaagcttacacaagaacaagacctaatttctacccatttttgtgtcacccactctc 29159966  T
Q  100 tcaat--gaatcctaagagaaaacacacaaggaagctttttgatccttccaatggtgaaatctcactacctaaggtgtttacaatgttttccaaccctca 197  Q
     ||||  |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| ||||||||||    
T  29159967 acaatatgaatcctaagagaaaacacaaaaggaagctttttgatccttccaatgttgaaatctcactacccaaggtgtttacaatgtttcccaaccctca 29160066  T
Q  198 aga 200  Q
    |||    
T  29160067 aga 29160069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 23403046 - 23402852
Alignment:
Q  1 actaagatgaaagtgttacaaaagagttgcaagaaattagcttataaccttacaaaagaacaaaacataatttctacccattttgtg--tcactcacact 98  Q
    |||||||||||||||||||||  ||||| |||||||||||||||||| |||||||||||||||  | |||||||||||||||||     |||||||||||    
T  23403046 actaagatgaaagtgttacaat-gagttacaagaaattagcttataagcttacaaaagaacaagtcctaatttctacccatttttcacatcactcacact 23402948  T
Q  99 ctcaatgaatcctaagagaaaacacacaaggaagctttttgatccttccaatggtgaaatctcactacctaaggtgtttacaatgttttccaaccc 194  Q
    |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| |||||||    
T  23402947 ctcaatgaatcctaagagaaaacacaaaaggaagctttttgatcattccaatggtgaaatctcactacccaaggtgtttacaatgtttcccaaccc 23402852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 194
Target Start/End: Original strand, 20284153 - 20284347
Alignment:
Q  1 actaagatgaaagtgttacaaaagagttgcaagaaattagcttataaccttacaaaagaacaaaacataatttctacccattttg--tgtcactcacact 98  Q
    |||||||||||||||||||||  | ||| |||||||||||||||||| |||||||||||||||  | |||||||||||| ||||   | |||| ||||||    
T  20284153 actaagatgaaagtgttacaat-gcgttacaagaaattagcttataagcttacaaaagaacaagtcctaatttctacccttttttcatatcacccacact 20284251  T
Q  99 ctcaatgaatcctaagagaaaacacacaaggaagctttttgatccttccaatggtgaaatctcactacctaaggtgtttacaatgttttccaaccc 194  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||    
T  20284252 ctcaatgaatcctaagagaaaacacaaaaggaagctttttgatccttccaatggtgaaatctcactacccaaggtgtttacaatgtttcccaaccc 20284347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 46516343 - 46516146
Alignment:
Q  1 actaagatgaaagtgttacaaaagagttgcaagaaattagcttataaccttacaaaagaacaaaacataatttctacccattttgtgtcactcacactct 100  Q
    |||| ||||||||||||||||||||||| ||||||||||||||| || |||||| |||||||| ||||||||||||||||||||||||||| ||||| |     
T  46516343 actatgatgaaagtgttacaaaagagttacaagaaattagcttaaaagcttacacaagaacaagacataatttctacccattttgtgtcacccacacaca 46516244  T
Q  101 c------aatgaatcctaagagaaaacacacaaggaagctttttgatccttccaatggtgaaatctcactacctaaggtgtttacaatgttttccaac 192  Q
    |      |||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||    
T  46516243 ctccaccaatgaatcttaagagaaaacacaaaatgaagctttttgatccttccaatggtgaaatctcactacccaaggtgtttacaatgtttcccaac 46516146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 1 - 194
Target Start/End: Original strand, 35960880 - 35961075
Alignment:
Q  1 actaagatgaaagtgttacaaaagagttgcaagaaattagcttataaccttacaaaagaacaaaacataatttctacccattttg-tgtcactcacactc 99  Q
    |||| ||||||||||||||||| |||||  ||||||||||||||||| ||||||||||||||| || |||||||||||||||||  | |||| |||||||    
T  35960880 actatgatgaaagtgttacaaatgagttagaagaaattagcttataagcttacaaaagaacaatacctaatttctacccattttcatatcacccacactc 35960979  T
Q  100 tca-atgaatcctaagagaaaacacacaaggaagctttttgatccttccaatggtgaaatctcactacctaaggtgtttacaatgttttccaaccc 194  Q
      | ||||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  35960980 aaagatgaatcttaagagaaaacgcaaaaggaagctttttgatccttccaatggtgaaatctcactacctaaggtgtttacaatgtttcccaaccc 35961075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 1 - 194
Target Start/End: Original strand, 2580454 - 2580648
Alignment:
Q  1 actaagatgaaagtgttacaaaagagttgcaagaaattagcttataaccttacaaaagaacaaaacataatttctacccattttg--tgtcactcacact 98  Q
    |||||||||||||||||||||  ||||| ||||||| ||||||  || |||||| ||||||||  | || ||||||||||||||   | |||| ||||||    
T  2580454 actaagatgaaagtgttacaat-gagttacaagaaaatagcttgcaagcttacacaagaacaagtcctagtttctacccatttttcatatcacccacact 2580552  T
Q  99 ctcaatgaatcctaagagaaaacacacaaggaagctttttgatccttccaatggtgaaatctcactacctaaggtgtttacaatgttttccaaccc 194  Q
    |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||    
T  2580553 ctcaatgaatcctaagagaaaacacaaaaggaagctttttgatcctttcaatggtgaaatctcactacccaaggtgtttacaatgttttccaaccc 2580648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 9190041 - 9189846
Alignment:
Q  1 actaagatgaaagtgttacaaaagagttgcaagaaat-tagcttataaccttacaaaagaacaaaacataatttctacccattttg--tgtcactcacac 97  Q
    |||||||||||||||||||||  ||||| |||||||  ||||||  || |||||| ||||||||  | |||||||||||||||||   | |||| |||||    
T  9190041 actaagatgaaagtgttacaat-gagttacaagaaaaatagcttgcaagcttacacaagaacaagtcctaatttctacccatttttcatatcacccacac 9189943  T
Q  98 tctcaatgaatcctaagagaaaacacacaaggaagctttttgatccttccaatggtgaaatctcactacctaaggtgtttacaatgttttccaaccc 194  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||    
T  9189942 tcttaatgaatcctaagagaaaacacacaaggaagctttttgatccttccaatggtgaaatctcactacccaaggtgtttacaatgtttcccaaccc 9189846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 11 - 194
Target Start/End: Complemental strand, 9235605 - 9235421
Alignment:
Q  11 aagtgttacaaaagagttgcaagaaattagcttataaccttacaaaagaacaaaacataatttctacccattttg--tgtcactcacactctcaatgaat 108  Q
    |||||||||||  ||||| |||||||||||||||||| |||||||||||||||  | |||||||||||||||||   | |||| | ||||||||| ||||    
T  9235605 aagtgttacaat-gagttacaagaaattagcttataagcttacaaaagaacaagtcctaatttctacccatttttcatatcacccgcactctcaacgaat 9235507  T
Q  109 cctaagagaaaacacacaaggaagctttttgatccttccaatggtgaaatctcactacctaaggtgtttacaatgttttccaaccc 194  Q
    |||||||||||||||| |||||||||||||||||||| |||||||||||| |||||| | |||||||||||||||||| |||||||    
T  9235506 cctaagagaaaacacaaaaggaagctttttgatccttgcaatggtgaaatatcactatccaaggtgtttacaatgtttcccaaccc 9235421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 49 - 194
Target Start/End: Complemental strand, 9185160 - 9185013
Alignment:
Q  49 cttacaaaagaacaaaacataatttctacccattttg--tgtcactcacactctcaatgaatcctaagagaaaacacacaaggaagctttttgatccttc 146  Q
    |||||| ||||||||  | |||||||||||||||||   | |||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  9185160 cttacacaagaacaagtcctaatttctacccatttttcatatcacccacactcttaatgaatcctaagagaaaacacacaaggaagctttttgatccttc 9185061  T
Q  147 caatggtgaaatctcactacctaaggtgtttacaatgttttccaaccc 194  Q
    ||||||||||||||||||||| |||||||||||||||||| |||||||    
T  9185060 caatggtgaaatctcactacccaaggtgtttacaatgtttcccaaccc 9185013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 1 - 193
Target Start/End: Complemental strand, 5817303 - 5817110
Alignment:
Q  1 actaagatgaaagtgttacaaaagagttgcaagaaattagcttataaccttacaaaagaacaaaacataatttctacccattttgt--gtcactcacact 98  Q
    ||||| ||||||||| |||||| | ||| ||||||||| || ||  | || ||||| ||||||||| ||||||||| |||||||    ||||||||||||    
T  5817303 actaatatgaaagtgatacaaaggggttacaagaaatttgcataagagctcacaaa-gaacaaaacctaatttctatccatttttcaagtcactcacact 5817205  T
Q  99 ctcaatgaatcctaagagaaaacacacaaggaagctttttgatccttccaatggtgaaatctcactacctaaggtgtttacaatgttttccaacc 193  Q
    ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||| ||||||    
T  5817204 ctcaatgaatcctaagaaaaaacacaaaaggaagctttttgatccttccaatggtgaaatctcactccccaaggtatttacaatgtttcccaacc 5817110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 21983348 - 21983545
Alignment:
Q  1 actaagatgaaagtgttacaaaa-gagttgcaagaaattagcttataaccttacaaaagaacaaaacataatttctacccattttgtgtcactcacactc 99  Q
    |||| |||||||||||||||||| ||||| ||||||| ||||||  || |||||| |||||||| || || ||||||||||||||||||||| ||| |||    
T  21983348 actatgatgaaagtgttacaaaaagagttacaagaaaatagcttgcaagcttacacaagaacaagacctagtttctacccattttgtgtcacccactctc 21983447  T
Q  100 tca--atgaatcct-aagagaaaacacacaaggaagctttttgatccttccaatggtgaaatctcactacctaaggtgtttacaatgttttccaaccct 195  Q
      |  ||||| ||| ||||||||||||| |||||||| || |||||||||||||||||||||||||||||| |||||||||||||||||| || |||||    
T  21983448 aaaatatgaaccctaaagagaaaacacaaaaggaagc-ttatgatccttccaatggtgaaatctcactacccaaggtgtttacaatgtttccccaccct 21983545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 194
Target Start/End: Original strand, 3047319 - 3047512
Alignment:
Q  1 actaagatgaaagtgttacaaaagagttgcaagaaattagcttataaccttacaaaagaacaaaacataatttctacccattttgt-gtcactcacactc 99  Q
    ||||| ||||||||| |||||| ||||| |||||||| | |||| || || ||||| |||||| || |||||||||||||||||   ||||| |||||||    
T  3047319 actaatatgaaagtggtacaaatgagttacaagaaatcaacttaaaagctcacaaa-gaacaagacctaatttctacccatttttaagtcacccacactc 3047417  T
Q  100 tcaatgaatcctaagagaaaacacacaaggaagctttttgatccttccaatggtgaaatctcactacctaaggtgtttacaatgttttccaaccc 194  Q
    |||||||||| ||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||| ||| || ||| | ||||| |||||||    
T  3047418 tcaatgaatcttaagataaaacacaaaaggaagctttttgatccttccaatgatgaaatctcactacccaagatgattatagtgtttcccaaccc 3047512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 194
Target Start/End: Original strand, 2479400 - 2479594
Alignment:
Q  1 actaagatgaaagtgttacaaaagagttgcaagaaattagcttataaccttacaaaagaacaaaacataatttctacccattttgtgtcactcacactct 100  Q
    |||| ||||||||||||||||| |||||  |||||| ||||||  || |||||| |||||||| || |||||||||||||| | ||||  | ||| ||||    
T  2479400 actatgatgaaagtgttacaaa-gagttataagaaaatagcttgcaagcttacacaagaacaagacctaatttctacccatgt-gtgtttcccactctct 2479497  T
Q  101 caat---gaatcctaa-gagaaaacacacaaggaagctttttgatccttccaatggtgaaatctcactacctaaggtgtttacaatgttttccaaccc 194  Q
    ||||   ||| ||||| ||||| | | | |||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |||||||    
T  2479498 caataatgaaccctaaagagaagatataaaaggaagctttt-gatccttccaatggtgaaatctcactacccaaggtgtttacaatgtttcccaaccc 2479594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 6 - 194
Target Start/End: Original strand, 21988975 - 21989166
Alignment:
Q  6 gatgaaagtgttacaaaa-gagttgcaagaaattagcttataaccttacaaaagaacaaaacataatttctacccattttgtgtcactcacactctcaat 104  Q
    |||||||||||||||||| ||||| ||||||| ||| ||  || |||| | ||||| ||||| || ||||||||||||||||||||| ||| ||   |||    
T  21988975 gatgaaagtgttacaaaaagagttacaagaaaatagattgcaagcttatacaagaataaaacctagtttctacccattttgtgtcacccactctaaaaat 21989074  T
Q  105 --gaatcctaa-gagaaaacacacaaggaagctttttgatccttccaatggtgaaatctcactacctaaggtgtttacaatgttttccaaccc 194  Q
      ||| ||||| |||||||||   |||||||||| | ||||||||||||||| ||||||||||||| |||||||||||||||||| |||||||    
T  21989075 atgaaccctaaagagaaaacaataaaggaagcttat-gatccttccaatggtaaaatctcactacccaaggtgtttacaatgtttcccaaccc 21989166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 31 - 193
Target Start/End: Original strand, 47263759 - 47263923
Alignment:
Q  31 aagaaattagcttataaccttacaaaagaacaaaacataatttctacccattttgtgtcactcacactctcaat---gaatcctaag-agaaaacacaca 126  Q
    |||||| ||||||  || |||||| |||||||| || ||||||||| |||||| ||||  | ||| ||||||||   ||| |||||  |||| ||||| |    
T  47263759 aagaaaatagcttgcaagcttacacaagaacaagacctaatttctatccattt-gtgtttcccactctctcaataatgaaccctaaatagaagacacaaa 47263857  T
Q  127 aggaagctttttgatccttccaatggtgaaatctcactacctaaggtgtttacaatgttttccaacc 193  Q
    ||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||| ||||||    
T  47263858 aggaagctttt-gatccttccaatggtgaaatctcactacccaaggtatttacaatgtttcccaacc 47263923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 139 - 187
Target Start/End: Original strand, 21640013 - 21640061
Alignment:
Q  139 gatccttccaatggtgaaatctcactacctaaggtgtttacaatgtttt 187  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||    
T  21640013 gatccttccaatggtgaaatctcactacccaaggtgtttacaatgtttt 21640061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 139 - 187
Target Start/End: Original strand, 21646211 - 21646259
Alignment:
Q  139 gatccttccaatggtgaaatctcactacctaaggtgtttacaatgtttt 187  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||    
T  21646211 gatccttccaatggtgaaatctcactacccaaggtgtttacaatgtttt 21646259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 139 - 187
Target Start/End: Original strand, 18413843 - 18413891
Alignment:
Q  139 gatccttccaatggtgaaatctcactacctaaggtgtttacaatgtttt 187  Q
    ||||||||||||||||||||||||||||| |||||||||||| ||||||    
T  18413843 gatccttccaatggtgaaatctcactacccaaggtgtttacattgtttt 18413891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 143 - 194
Target Start/End: Complemental strand, 44848015 - 44847964
Alignment:
Q  143 cttccaatggtgaaatctcactacctaaggtgtttacaatgttttccaaccc 194  Q
    ||||||||||||||||||||||| | |||||||||||||||||| |||||||    
T  44848015 cttccaatggtgaaatctcactatccaaggtgtttacaatgtttcccaaccc 44847964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 139 - 187
Target Start/End: Original strand, 18408967 - 18409015
Alignment:
Q  139 gatccttccaatggtgaaatctcactacctaaggtgtttacaatgtttt 187  Q
    |||||||  |||||||||||||||||||| |||||||||||||||||||    
T  18408967 gatccttttaatggtgaaatctcactacccaaggtgtttacaatgtttt 18409015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 28617258 - 28617176
Alignment:
Q  1 actaagatgaaagtgttacaaaagagttgcaagaaattagcttataaccttacaaaagaacaaaacataatttctacccatttt 84  Q
    ||||||||||||||| |||||  | ||| ||||||||||||||| || || || |||||||||||| ||||||||||| |||||    
T  28617258 actaagatgaaagtgatacaatggggttacaagaaattagcttaaaagctcac-aaagaacaaaacctaatttctacctatttt 28617176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 44848717 - 44848567
Alignment:
Q  1 actaagatgaaagtgttacaaaagagttgcaagaaattagcttataaccttacaaaagaacaaaacataatttctacccattttgtgtcactcacactct 100  Q
    |||| ||||||||||||||||| ||||| |||||||  |||||  || |||||| ||||| || || ||||||||||||| |||||||  | ||| ||||    
T  44848717 actatgatgaaagtgttacaaa-gagttacaagaaaaaagcttgcaagcttacacaagaataagacctaatttctaccca-tttgtgtttcccactctct 44848620  T
Q  101 c---aatgaa-tcctaagagaaaacacacaaggaagctttttgatccttccaat 150  Q
    |   |||||| ||  ||||||| ||||| |||||||| ||||||||||||||||    
T  44848619 caataatgaactctaaagagaagacacaaaaggaagc-ttttgatccttccaat 44848567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 122
Target Start/End: Complemental strand, 45685725 - 45685656
Alignment:
Q  55 aaagaacaaaacataatttctacccattttgt--gtcactcacactctcaatgaatcctaagagaaaaca 122  Q
    |||||||||| | ||||||||| ||||||| |  |||||||| | || ||||||||||||||||||||||    
T  45685725 aaagaacaaaccttaatttctatccattttttaagtcactcaaagtcgcaatgaatcctaagagaaaaca 45685656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 139 - 187
Target Start/End: Complemental strand, 1533334 - 1533285
Alignment:
Q  139 gatccttccaatggtgaaatc-tcactacctaaggtgtttacaatgtttt 187  Q
    |||||||||||||||||| || |||||||| |||||| ||||||||||||    
T  1533334 gatccttccaatggtgaactcctcactacccaaggtgattacaatgtttt 1533285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 135; Significance: 2e-70; HSPs: 3)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 194
Target Start/End: Original strand, 5747 - 5943
Alignment:
Q  1 actaagatgaaagtgttacaaaagagttgcaagaaattagcttataaccttacaaaagaacaaaacataatttctacccattttgtgtcactcacactct 100  Q
    |||| ||||||||||||||||||||| | |||||||||||||||||| |||||| |||||||| || |||||||||| ||||||||||||| ||||||||    
T  5747 actatgatgaaagtgttacaaaagagatacaagaaattagcttataagcttacacaagaacaagacttaatttctactcattttgtgtcacccacactct 5846  T
Q  101 caatga---atcctaagagaaaacacacaaggaagctttttgatccttccaatggtgaaatctcactacctaaggtgtttacaatgttttccaaccc 194  Q
    ||||||   |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||    
T  5847 caatgatgaatcctaagagaaaacacaaaaggaagctttttgatccttccaatggtgaaatctcactacccaaggtgtttacaatgtttgccaaccc 5943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #2
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 1 - 194
Target Start/End: Original strand, 2556 - 2752
Alignment:
Q  1 actaagatgaaagtgttacaaaagagttgcaagaaattagcttataaccttacaaaagaacaaaacataatttctacccattttgtgtcactcacactct 100  Q
    |||| |||||||||||||||||||| ||  ||||||||||||||||| |||||| |||||||| |  |||||||||||||||||||||||| ||||||||    
T  2556 actatgatgaaagtgttacaaaagaattataagaaattagcttataagcttacacaagaacaagaactaatttctacccattttgtgtcacccacactct 2655  T
Q  101 caatga---atcctaagagaaaacacacaaggaagctttttgatccttccaatggtgaaatctcactacctaaggtgtttacaatgttttccaaccc 194  Q
    ||||||   ||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||| |||||||    
T  2656 caatgatgaatcctaagataaaacacaaaaggaagctttttgatccttccaatggtgaaatctcactacgcaaggtgtttacaatgtttcccaaccc 2752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 133313 - 133118
Alignment:
Q  1 actaagatgaaagtgttacaaaagagttgcaagaaat-tagcttataaccttacaaaagaacaaaacataatttctacccattttgtgtcactcacactc 99  Q
    |||| ||||||| ||||||||| ||||| |||||||  ||||||  || |||||| |||||||| || |||||||||||||||| ||||  | ||| |||    
T  133313 actatgatgaaaatgttacaaa-gagttacaagaaaaatagcttgcaaacttacacaagaacaagacctaatttctacccattt-gtgtttcccactctc 133216  T
Q  100 tcaat---gaatcctaa-gagaaaacacacaaggaagctttttgatccttccaatggtgaaatctcactacctaaggtgtttacaatgttttccaaccc 194  Q
    |||||   ||| ||||| ||||| ||||| |||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |||||||    
T  133215 tcaataatgaaccctaaagagaagacacaaaaggaagctttt-gatccttccaatggtgaaatctcactacccaaggtgtttacaatgtttcccaaccc 133118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 135; Significance: 2e-70; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 10281815 - 10282016
Alignment:
Q  1 actaagatgaaagtgttacaaaagagttgcaagaaattagcttataaccttacaaaagaacaaaacataatttctacccattttgtgtcactcacactct 100  Q
    |||| ||||||||||||||||||||||| ||||||||||||||| || |||||| |||||||| || |||||||||||||||||||||||| |||||||     
T  10281815 actatgatgaaagtgttacaaaagagttacaagaaattagcttacaagcttacacaagaacaagacctaatttctacccattttgtgtcacccacactca 10281914  T
Q  101 caat--gaatcctaagagaaaacacacaaggaagctttttgatccttccaatggtgaaatctcactacctaaggtgtttacaatgttttccaaccctcaa 198  Q
    ||||  |||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||  ||||||||||    
T  10281915 caatatgaatcctaagagaaaacacaaaagaaagctttttgatccttccaatggtgaaatctcactacccaaggtgtttacaatgtttcacaaccctcaa 10282014  T
Q  199 ga 200  Q
    ||    
T  10282015 ga 10282016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 194
Target Start/End: Original strand, 19588810 - 19589003
Alignment:
Q  1 actaagatgaaagtgttacaaaagagttgcaagaaattagcttataaccttacaaaagaacaaaacataatttctacccattttgtgtcactcacactct 100  Q
    |||| ||||||||||||||||||||||| |||||||||| ||||||| |||||| |||||||| || |||||||||||| ||||||||||| |||| |||    
T  19588810 actatgatgaaagtgttacaaaagagttacaagaaattaccttataagcttacacaagaacaagacctaatttctaccctttttgtgtcacccacaatct 19588909  T
Q  101 caatgaatcctaagagaaaacacacaaggaagctttttgatccttccaatggtgaaatctcactacctaaggtgtttacaatgttttccaaccc 194  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| || ||| |||||||||||||| |||||||    
T  19588910 caatgaatcctaagagaaaacacaaaaggaagatttttgatccttccaatggtgaaatctcactgcccaagatgtttacaatgtttcccaaccc 19589003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 3880363 - 3880564
Alignment:
Q  1 actaagatgaaagtgttacaaaagagttgcaagaaattagcttataaccttacaaaagaacaaaacataatttctacccattttgtgtcactcacactct 100  Q
    |||| ||||||||||||||||||||||| ||||||||||| ||| || |||||| |||||||| || |||||||||||||||||||||||| ||| |||     
T  3880363 actatgatgaaagtgttacaaaagagttacaagaaattagtttacaagcttacacaagaacaagacctaatttctacccattttgtgtcacccactctca 3880462  T
Q  101 caat--gaatcctaagagaaaacacacaaggaagctttttgatccttccaatggtgaaatctcactacctaaggtgtttacaatgttttccaaccctcaa 198  Q
    ||||  |||||||| ||||||| ||| |||||||||||||||||||||||||||||||||||||| ||| || |||||||||||||||  ||||||||||    
T  3880463 caatatgaatcctaggagaaaaaacaaaaggaagctttttgatccttccaatggtgaaatctcacaacccaatgtgtttacaatgtttctcaaccctcaa 3880562  T
Q  199 ga 200  Q
    ||    
T  3880563 ga 3880564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 11181865 - 11181671
Alignment:
Q  1 actaagatgaaagtgttacaaaagagttgcaagaaattagcttataaccttacaaaagaacaaaacataatttctacccattttg-tgtcactcacactc 99  Q
    ||||||||||||||| |||||| ||||| |||||||||||| || || ||  |||| |||||| || |||||||||||||||||  |||||| |||||||    
T  11181865 actaagatgaaagtgatacaaatgagttacaagaaattagcctaaaagctctcaaatgaacaagacctaatttctacccattttcatgtcacccacactc 11181766  T
Q  100 tcaatgaatcctaagagaaaacacacaaggaagctttttgatccttccaatggtgaaatctcactacctaaggtgtttacaatgttttccaaccc 194  Q
     |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| |||||||    
T  11181765 acaatgaatcctaagagaaaacacaaaaggaagctttttgatccttccaatggtgaaatttcactacccaaggtgtttacaatgtttcccaaccc 11181671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 1 - 194
Target Start/End: Original strand, 28832323 - 28832515
Alignment:
Q  1 actaagatgaaagtgttacaaaagagttgcaagaaattagcttataaccttacaaaagaacaaaacataatttctacccattttg--tgtcactcacact 98  Q
    |||||||||||||||||||||  ||||| ||||||||||||||||||   |||||||||||||    |||||||||||||||||   | |||| ||||||    
T  28832323 actaagatgaaagtgttacaat-gagttacaagaaattagcttataag--tacaaaagaacaagttctaatttctacccatttttcatatcacccacact 28832419  T
Q  99 ctcaatgaatcctaagagaaaacacacaaggaagctttttgatccttccaatggtgaaatctcactacctaaggtgtttacaatgttttccaaccc 194  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||    
T  28832420 ctcaatgaatcctaagagaaaacacaaaaggaagctttttgatccttccaatggtgaaatctcactacccaaggtgtttacaatgtttcccaaccc 28832515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 177
Target Start/End: Complemental strand, 42127443 - 42127266
Alignment:
Q  1 actaagatgaaagtgttacaaaagagttgcaagaaattagcttataaccttacaaaagaacaaaacataatttctacccattttg--tgtcactcacact 98  Q
    |||||||||||||||||||||  ||||| |||||||||||||||||| |||||||||||||||  | || ||||||||||||||   | |||| ||||||    
T  42127443 actaagatgaaagtgttacaat-gagttacaagaaattagcttataagcttacaaaagaacaagtcctactttctacccatttttcatatcacccacact 42127345  T
Q  99 ctcaatgaatcctaagagaaaacacacaaggaagctttttgatccttccaatggtgaaatctcactacctaaggtgttt 177  Q
    |||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| |||||||||    
T  42127344 ctcaatgaatcctaagagaaaacacaaaagaaagctttttgatccttccaatggtgaaatctcactacccaaggtgttt 42127266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 186
Target Start/End: Complemental strand, 17003993 - 17003806
Alignment:
Q  1 actaagatgaaagtgttacaaaagagttgcaagaaattagcttataaccttacaaaagaacaaaacataatttctacccattttgtgtcactcacactct 100  Q
    |||| ||||||||| || |||||||||| ||| |||||| |||| || |||||| |||||||| || ||||||||||||||||  | |||||||| |||     
T  17003993 actatgatgaaagtatttcaaaagagttacaaaaaattaacttacaagcttacacaagaacaagacctaatttctacccatttaatttcactcactctca 17003894  T
Q  101 caat--gaatcctaagagaaaacacacaaggaagctttttgatccttccaatggtgaaatctcactacctaaggtgtttacaatgttt 186  Q
    ||||  |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  17003893 caatatgaatcctaagagaaaacacaaaaggaagctttttgatccttccaatggtgaaatctcactacccaaggtgtttacaatgttt 17003806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 7 - 194
Target Start/End: Complemental strand, 11916999 - 11916811
Alignment:
Q  7 atgaaagtgttacaaaagagttgcaagaaattagcttataaccttacaaaagaacaaaacataatttctacccattttgtgtcactcacactctca--at 104  Q
    |||||||||||||||||||||| ||||||| ||| ||  || |||||| |||||||| || |||||||||||||||||||||||| ||| |||  |  ||    
T  11916999 atgaaagtgttacaaaagagttacaagaaaatagtttgcaagcttacacaagaacaagacctaatttctacccattttgtgtcacccactctcaaacgat 11916900  T
Q  105 gaatcctaagagaaaacacacaaggaagctttttgatccttccaatggtgaaatctcactacctaaggtgtttacaatgttttccaaccc 194  Q
    ||| |||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||    
T  11916899 gaaccctaagagaaaacacaaaaggaag-tttttgatccttccaatggtgaaatctcactacccaaggtgtttacaatgtttcccaaccc 11916811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 186
Target Start/End: Complemental strand, 31300629 - 31300442
Alignment:
Q  1 actaagatgaaagtgttacaaaagagttgcaagaaat-tagcttataaccttacaaaagaacaaaacataatttctacccattttg--tgtcactcacac 97  Q
    |||||||||||||||||| ||  |||||||||||||  ||| ||  || |||||| ||||||||  | ||||||||||||||||    | |||| |||||    
T  31300629 actaagatgaaagtgttataat-gagttgcaagaaaaatagtttgcaagcttacacaagaacaagtcctaatttctacccatttctcatatcacccacac 31300531  T
Q  98 tctcaatgaatcctaagagaaaacacacaaggaagctttttgatccttccaatggtgaaatctcactacctaaggtgtttacaatgttt 186  Q
    ||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  31300530 tctcaatgaatcctaagagaaaacacaaaaggaagccttttgatccttccaatggtgaaatctcactacccaaggtgtttacaatgttt 31300442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 12084208 - 12084016
Alignment:
Q  1 actaagatgaaagtgttacaaaagagttgcaagaaattagcttataaccttacaaaagaacaaaacataatttctacccattttgtgtcactcacactct 100  Q
    |||| ||||||||||||||||| ||||| |||||||||| |||| || |||||| |||||||| || ||||||||||||| |||||||||| ||| |||     
T  12084208 actatgatgaaagtgttacaaa-gagttacaagaaattaacttaaaagcttacacaagaacaagacctaatttctaccca-tttgtgtcacccactctca 12084111  T
Q  101 ca--atgaatcctaagagaaaacacacaaggaagctttttgatccttcc-aatggtgaaatctcactacctaaggtgtttacaatgttttccaaccc 194  Q
    ||  ||||||||||||| |||||||| ||||||||||||  |||||||| ||||||||| |||||||||| |||||||||| ||||||| |||||||    
T  12084110 caatatgaatcctaagaaaaaacacaaaaggaagctttt--atccttccaaatggtgaattctcactacccaaggtgtttaaaatgtttaccaaccc 12084016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 194
Target Start/End: Original strand, 14520294 - 14520488
Alignment:
Q  1 actaagatgaaagtgttacaaaagagttgcaagaaattagcttataaccttacaaaagaacaaaacataatttctacccattttgtgtcactcacactct 100  Q
    |||| ||||||||||||||||| ||||| ||||||| ||||||  || |||||| |||||||| || |||||||||||||||| |||| || ||| ||||    
T  14520294 actatgatgaaagtgttacaaa-gagttacaagaaaatagcttgcaagcttacacaagaacaagacctaatttctacccattt-gtgttacccactctct 14520391  T
Q  101 caat---gaatcctaa-gagaaaacacacaaggaagctttttgatccttccaatggtgaaatctcactacctaaggtgtttacaatgttttccaaccc 194  Q
    ||||   ||| ||||| ||||| ||||| |||||||||||| ||||||||||||||||||||||||||| | |||||||||||||||||| |||||||    
T  14520392 caattatgaaccctaaagagaagacacaaaaggaagctttt-gatccttccaatggtgaaatctcactatccaaggtgtttacaatgtttcccaaccc 14520488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 93 - 194
Target Start/End: Complemental strand, 24553467 - 24553366
Alignment:
Q  93 cacactctcaatgaatcctaagagaaaacacacaaggaagctttttgatccttccaatggtgaaatctcactacctaaggtgtttacaatgttttccaac 192  Q
    |||||||| ||||||| ||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| |||||    
T  24553467 cacactcttaatgaattctaagagaaaacacaaaaggaagctttttgatccttctaatggtgaaatctcactacccaaggtgtttacaatgtttcccaac 24553368  T
Q  193 cc 194  Q
    ||    
T  24553367 cc 24553366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 9353365 - 9353171
Alignment:
Q  1 actaagatgaaagtgttacaaaagagttgcaagaaattagcttataaccttacaaaagaacaaaacataatttctacccattttgtgtcactcacactct 100  Q
    |||| ||||||||||||||||| ||||| |||||||  |||||  || |||||| |||||||| |  |||||||||||||||| ||||  | ||| ||||    
T  9353365 actatgatgaaagtgttacaaa-gagttacaagaaaaaagcttgcaagcttacacaagaacaagatctaatttctacccattt-gtgtttcccactctct 9353268  T
Q  101 caatga--atcct--aagagaaaacacacaaggaagctttttgatccttccaatggtgaaatctcactacctaaggtgtttacaatgttttccaaccc 194  Q
    |||| |  | |||  ||||||| ||||| |||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |||||||    
T  9353267 caataatgaaccttaaagagaagacacaaaaggaagctttt-gatccttccaatggtgaaatctcactacccaaggtgtttacaatgtttcccaaccc 9353171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 5 - 191
Target Start/End: Complemental strand, 7160932 - 7160746
Alignment:
Q  5 agatgaaagtgttacaaaagagttgcaagaaattagcttataaccttacaaaagaacaaaacataatttctacccattttgt--gtcactcacactctca 102  Q
    ||||||||||| |||||| | ||| ||| ||||||| ||  || || ||||| |||||| || ||||||||||  ||||| |  |||||| |||||||||    
T  7160932 agatgaaagtgatacaaaggggttacaaaaaattagatttaaagctcacaaa-gaacaagacttaatttctacatattttttaagtcact-acactctca 7160835  T
Q  103 atgaatcctaagagaaaacacacaaggaagctttttgatccttccaatggtgaaatctcactacctaaggtgtttacaatgttttccaa 191  Q
    |||||||||||||||||||| | || ||||||||||||||||||||||| ||||||||||||  | |||||| ||||||||||| ||||    
T  7160834 atgaatcctaagagaaaacataaaatgaagctttttgatccttccaatgatgaaatctcactgtccaaggtgattacaatgtttcccaa 7160746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 182
Target Start/End: Complemental strand, 33030973 - 33030789
Alignment:
Q  1 actaagatgaaagtgttacaaaagagttgcaagaaattagcttataaccttacaaaagaacaaaacataatttctacccattttgt--gtcactcacact 98  Q
    ||||||||||||||| | |||  | ||| ||||||||||||||| || || ||||| |||||||||||||||||||||||||||    ||||||||||||    
T  33030973 actaagatgaaagtgatgcaatggggttacaagaaattagcttaaaagctcacaaa-gaacaaaacataatttctacccatttttcaagtcactcacact 33030875  T
Q  99 ctcaatgaatcctaagagaaa-----acacacaaggaagctttttgatccttccaatggtgaaatctcactacctaaggtgtttacaat 182  Q
    |||||||||||||||||||||     ||||  |||||||||||||| ||    ||||||||||||||||||||| ||| || |||||||    
T  33030874 ctcaatgaatcctaagagaaattaaaacactaaaggaagctttttgttct---caatggtgaaatctcactacccaagatgattacaat 33030789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 1 - 194
Target Start/End: Original strand, 15464596 - 15464792
Alignment:
Q  1 actaagatgaaagtgttacaaaagagttgcaagaaat-tagcttataaccttacaaaagaacaaaacataatttctacccattttgtgtcactcacactc 99  Q
    |||| ||||||||||||||||| ||||| |||||||  ||||||  || |||||| |||||||| || |||||||||||||||| ||||  | ||| |||    
T  15464596 actatgatgaaagtgttacaaa-gagttacaagaaaaatagcttgcaagcttacacaagaacaagacctaatttctacccattt-gtgtttcccactctc 15464693  T
Q  100 tcaat---gaatcctaa--gagaaaacacacaaggaagctttttgatccttccaatggtgaaatctcactacctaaggtgtttacaatgttttccaaccc 194  Q
     ||||   ||| |||||  ||||| ||||| |||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||| |||||||    
T  15464694 acaataatgaaccctaaaagagaagacacaaaaggaagctttt-gatccttccaatggtgaaatctcactacccaaggtgtttacgatgtttcccaaccc 15464792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 1 - 165
Target Start/End: Original strand, 2630295 - 2630460
Alignment:
Q  1 actaagatgaaagtgttacaaaagagttgcaagaaattagcttataaccttacaaaagaacaaaacataatttctacccattttgt--gtcactcacact 98  Q
    |||| |||||||||| |||||||| ||| ||| ||||||||||| || |  ||||| ||||||||| |||||| ||  ||||||    ||||| | ||||    
T  2630295 actatgatgaaagtgatacaaaagggttacaataaattagcttaaaaacacacaaa-gaacaaaacctaatttttatacatttttcaagtcaccctcact 2630393  T
Q  99 ctcaatgaatcctaagagaaaacacacaaggaagctttttgatccttccaatggtgaaatctcacta 165  Q
    | |||||||||||||||||||||||  |||||||||||||||||||| |||||||||||| ||||||    
T  2630394 cacaatgaatcctaagagaaaacactaaaggaagctttttgatcctttcaatggtgaaatttcacta 2630460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 36932383 - 36932187
Alignment:
Q  1 actaagatgaaagtgttacaaaagagttgcaagaaat-tagcttataaccttacaaaagaacaaaacataatttctacccattttgtgtcactcacactc 99  Q
    |||| ||||||||||||||||| ||||| |||||||  ||||||  ||  ||||| |||||||| || |||||||||||||||| ||||  | ||| |||    
T  36932383 actatgatgaaagtgttacaaa-gagttacaagaaaaatagcttgcaagtttacataagaacaagacttaatttctacccattt-gtgtttcccactctc 36932286  T
Q  100 tcaat---gaatcctaagagaaaacacacaag--gaagctttttgatccttccaatggtgaaatctcactacctaaggtgtttacaatgttttccaaccc 194  Q
    |||||   ||| ||||| | | || |||||||  ||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |||||||    
T  36932285 tcaataatgaaccctaaaacagaagacacaagaggaagctttt-gatccttccaatggtgaaatctcactacccaaggtgtttacaatgtttcccaaccc 36932187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 3 - 162
Target Start/End: Original strand, 6741918 - 6742076
Alignment:
Q  3 taagatgaaagtgttacaaaagagttgcaagaaattagcttataaccttacaaaagaacaaaacataatttctacccattttgt--gtcactcacactct 100  Q
    ||||||| ||||| ||||||  |||| ||||||||||||||  || || ||||| ||||||||| |||||||||| ||||||    ||||| ||||||||    
T  6741918 taagatggaagtgatacaaagaagttacaagaaattagcttgcaaactcacaaa-gaacaaaacctaatttctactcatttttcaagtcacccacactct 6742016  T
Q  101 caatgaatcctaagagaaaacacacaaggaagctttttgatccttccaatggtgaaatctca 162  Q
    ||||||||||||||| |||||||| |  ||| ||||||||| ||| ||||||||||||||||    
T  6742017 caatgaatcctaagaaaaaacacaga--gaatctttttgattctttcaatggtgaaatctca 6742076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 112 - 187
Target Start/End: Original strand, 38219577 - 38219651
Alignment:
Q  112 aagagaaaacacacaaggaagctttttgatccttccaatggtgaaatctcactacctaaggtgtttacaatgtttt 187  Q
    ||||||| |||||  ||||||||||  ||||||||||||||||||||||||||||| |||||||||||||||||||    
T  38219577 aagagaagacacaagaggaagcttta-gatccttccaatggtgaaatctcactacccaaggtgtttacaatgtttt 38219651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 135 - 186
Target Start/End: Complemental strand, 42127268 - 42127217
Alignment:
Q  135 ttttgatccttccaatggtgaaatctcactacctaaggtgtttacaatgttt 186  Q
    ||||||||||||||||||||||||||||||||| ||||||| ||||||||||    
T  42127268 ttttgatccttccaatggtgaaatctcactacccaaggtgtatacaatgttt 42127217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 134 - 187
Target Start/End: Original strand, 35387862 - 35387915
Alignment:
Q  134 tttttgatccttccaatggtgaaatctcactacctaaggtgtttacaatgtttt 187  Q
    |||| ||||||||||||||||||||||||||||| |||||| ||||||||||||    
T  35387862 ttttagatccttccaatggtgaaatctcactacccaaggtgattacaatgtttt 35387915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 102 - 191
Target Start/End: Original strand, 5611308 - 5611398
Alignment:
Q  102 aatgaatcctaagagaaaacacacaaggaagctttttgatccttccaatggtgaaatctcactacctaaggtgttta-caatgttttccaa 191  Q
    ||||| ||||||||||||||||  ||| ||||||||||||| || ||||  |||||||||| || |||||||||||| |||||||| ||||    
T  5611308 aatgattcctaagagaaaacactaaagcaagctttttgatcttttcaataatgaaatctcattaactaaggtgtttaccaatgtttcccaa 5611398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 139 - 187
Target Start/End: Original strand, 24136053 - 24136102
Alignment:
Q  139 gatccttccaatggtgaaatc-tcactacctaaggtgtttacaatgtttt 187  Q
    |||||||||||||||||| || |||||||| |||||| ||||||||||||    
T  24136053 gatccttccaatggtgaactcctcactacccaaggtgattacaatgtttt 24136102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 113 - 178
Target Start/End: Original strand, 30900043 - 30900108
Alignment:
Q  113 agagaaaacacacaaggaagctttttgatccttccaatggtgaaatctcactacctaaggtgttta 178  Q
    |||||||||||  ||| ||||||||| ||||||||  |  ||||||||||||||| ||||||||||    
T  30900043 agagaaaacactaaagaaagcttttttatccttcctctaatgaaatctcactacccaaggtgttta 30900108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 135; Significance: 2e-70; HSPs: 31)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 194
Target Start/End: Original strand, 10047443 - 10047639
Alignment:
Q  1 actaagatgaaagtgttacaaaagagttgcaagaaattagcttataaccttacaaaagaacaaaacataatttctacccattttgtgtcactcacactct 100  Q
    |||| ||||||||||||||||||||||| |||||||||||||||||| |||||| |||||||| || |||||||||||||||||||||||| ||||||||    
T  10047443 actatgatgaaagtgttacaaaagagttacaagaaattagcttataagcttacacaagaacaagacctaatttctacccattttgtgtcacccacactct 10047542  T
Q  101 c---aatgaatcctaagagaaaacacacaaggaagctttttgatccttccaatggtgaaatctcactacctaaggtgtttacaatgttttccaaccc 194  Q
    |   |||||||||||||| |||||||| ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||    
T  10047543 caataatgaatcctaagacaaaacacaaaaggaagttttttgatccttccaatggtgaaatctcactacccaaggtgtttacaatgtttcccaaccc 10047639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 1 - 193
Target Start/End: Complemental strand, 42599605 - 42599414
Alignment:
Q  1 actaagatgaaagtgttacaaaagagttgcaagaaattagcttataaccttacaaaagaacaaaacataatttctacccattttgtgtcactcacactct 100  Q
    |||||||||||| ||||||||  ||||| |||||||||||||||||| ||||||||||||||| || |||||||||||||||||||||||| | ||||||    
T  42599605 actaagatgaaaatgttacaat-gagttacaagaaattagcttataagcttacaaaagaacaagacctaatttctacccattttgtgtcacccgcactct 42599507  T
Q  101 caatgaatcctaagagaaaacacacaaggaagctttttgatccttccaatggtgaaatctcactacctaaggtgtttacaatgttttccaacc 193  Q
    |||||||||||||||||||||||| ||||||| ||||| |||||||||||||||||||||||||||| |||||||||| ||||||| ||||||    
T  42599506 caatgaatcctaagagaaaacacaaaaggaagtttttttatccttccaatggtgaaatctcactacccaaggtgtttagaatgtttcccaacc 42599414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 16623326 - 16623132
Alignment:
Q  1 actaagatgaaagtgttacaaaagagttgcaagaaattagcttataaccttacaaaagaacaaaacataatttctacccattttgtgtcactcacactct 100  Q
    |||| ||||||||||||||||||||||| ||||||||||||| |||| |||||| |||||||| || |||||||||||||||||||||||| ||| |||     
T  16623326 actatgatgaaagtgttacaaaagagttacaagaaattagctaataagcttacagaagaacaagacctaatttctacccattttgtgtcacccactctca 16623227  T
Q  101 ca--atgaatcctaagagaaaacacacaaggaagctttttgatccttccaatggtgaaatctcactacctaaggtgtttacaatgttttccaaccc 194  Q
    ||  ||||||||||| |||||||||| |||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||    
T  16623226 caatatgaatcctaaaagaaaacacaaaaggaagc-ttttgatccttccaatggtgaaatctcactacccaaggtgtttacaatgtttcccaaccc 16623132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 6743448 - 6743254
Alignment:
Q  1 actaagatgaaagtgttacaaaagagttgcaagaaattagcttataaccttacaaaagaacaaaacataatttctacccattttgtgtcactcacactct 100  Q
    |||| ||||||||||||||||||||| | ||| ||||||||||||| | |||||||||||||| || |||||||||||||||||||||||| ||||||||    
T  6743448 actatgatgaaagtgttacaaaagagctacaaaaaattagcttatagc-ttacaaaagaacaagacctaatttctacccattttgtgtcacccacactct 6743350  T
Q  101 caat---gaatcctaagagaaaacacacaaggaagctttttgatccttccaatggtgaaatctcactacctaaggtgtttacaatgttttccaaccc 194  Q
    ||||   |||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| |||| |||||||||||||||||| |||||||    
T  6743349 caataatgaatcctaagagaaaacacaaaaggaag-tttttgatccttccaatggtgaaatctcattacccaaggtgtttacaatgtttcccaaccc 6743254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 24333873 - 24334075
Alignment:
Q  1 actaagatgaaagtgttacaaaagagttgcaagaaattagcttataaccttacaaaagaacaaaa-cataatttctacccattttgtgtcactcacactc 99  Q
    |||| |||||| ||||||||||||||||  || ||||||||||| || |||||| ||||| |||| | |||||||||||||||||||||||  ||| |||    
T  24333873 actatgatgaacgtgttacaaaagagttataaaaaattagcttacaagcttacacaagaaaaaaaacctaatttctacccattttgtgtcagccactctc 24333972  T
Q  100 tcaat--gaatcctaagagaaaacacacaaggaagctttttgatccttccaatggtgaaatctcactacctaaggtgtttacaatgttttccaaccctca 197  Q
     ||||  |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||    
T  24333973 acaatatgaatcctaagagaaaacacaaaaggaagctttttgatccttccaatggtgaaatctcactacccaaggtgtttacaatgtttcccaaccctca 24334072  T
Q  198 aga 200  Q
    |||    
T  24334073 aga 24334075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 21 - 194
Target Start/End: Complemental strand, 5269215 - 5269039
Alignment:
Q  21 aaagagttgcaagaaattagcttataaccttacaaaagaacaaaacataatttctacccattttgtgtcactcacactctcaat---gaatcctaagaga 117  Q
    |||| ||| |||||||||||||||||| |||||| |||||||| || ||||||||||||||| |||||||| ||||||||||||   |||||||||||||    
T  5269215 aaagtgttacaagaaattagcttataagcttacacaagaacaagacctaatttctacccattgtgtgtcacccacactctcaataatgaatcctaagaga 5269116  T
Q  118 aaacacacaaggaagctttttgatccttccaatggtgaaatctcactacctaaggtgtttacaatgttttccaaccc 194  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| |||||||    
T  5269115 aaacacaaaaggaagctttttgatccttccaatggtgaaatctcactatccaaggtgtttacaatgtttcccaaccc 5269039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 21 - 194
Target Start/End: Complemental strand, 25862046 - 25861872
Alignment:
Q  21 aaagagttgcaagaaattagcttataaccttacaaaagaacaaaacataatttctacccattttgtgtcactcacactctcaatgaatcctaagag-aaa 119  Q
    |||| ||| |||||||||||||||||| |||||| |||||||| || ||||| |||||||||||||||||| |||||||||||||||||||||||| |||    
T  25862046 aaagtgttacaagaaattagcttataagcttacacaagaacaagacctaattcctacccattttgtgtcacccacactctcaatgaatcctaagagaaaa 25861947  T
Q  120 acacacaaggaagctttttgatccttccaatggtgaaatctcactacctaaggtgtttacaatgttttccaaccc 194  Q
    ||||| ||||||| |||||||||||||||||||||||||||||||||  |||||||||||||||||| |||||||    
T  25861946 acacaaaaggaagttttttgatccttccaatggtgaaatctcactactcaaggtgtttacaatgtttcccaaccc 25861872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 194
Target Start/End: Original strand, 3777613 - 3777807
Alignment:
Q  1 actaagatgaaagtgttacaaaagagttgcaagaaattagcttataaccttacaaaagaacaaaacataatttctacccattttgtgtcactcacactct 100  Q
    |||| ||||||||||||||||| ||||| ||||||| ||||||  || |||||| |||||||| |  |||||||||||||||||||||||| ||| |||     
T  3777613 actatgatgaaagtgttacaaa-gagttacaagaaaatagcttgcaaacttacacaagaacaagatctaatttctacccattttgtgtcacccactctca 3777711  T
Q  101 caat--gaatcctaagagaaaacacacaaggaagctttttgatccttccaatggtgaaatctcactacctaaggtgtttacaatgttttccaaccc 194  Q
    ||||  |||||||||||||||| ||| ||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| |||||||    
T  3777712 caatatgaatcctaagagaaaatacaaaaggaagctttttgatcattccaatggtgaaatctcactacccaaggtgtttacaatgtttcccaaccc 3777807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 8 - 182
Target Start/End: Complemental strand, 38152465 - 38152289
Alignment:
Q  8 tgaaagtgttacaaaagagttgcaagaaattagcttataaccttacaaaagaacaaaacataatttctacccattttgtgtcactcacactctc---aat 104  Q
    |||||||||||||||||||||  ||||||||||||||||| |||||| |||||||| || ||||||||||| |||||||||||| |||||||||   |||    
T  38152465 tgaaagtgttacaaaagagttataagaaattagcttataagcttacacaagaacaagacctaatttctaccaattttgtgtcacccacactctcaataat 38152366  T
Q  105 gaatcctaagagaaaacacacaaggaagctttttgatccttccaatggtgaaatctcactacctaaggtgtttacaat 182  Q
    |||||||||||||||||||| | |||||| |||||||||||||||||||||| | |||||||| ||||||||||||||    
T  38152365 gaatcctaagagaaaacacaaatggaagc-ttttgatccttccaatggtgaattgtcactacccaaggtgtttacaat 38152289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 1 - 194
Target Start/End: Original strand, 5112301 - 5112495
Alignment:
Q  1 actaagatgaaagtgttacaaaagagttgcaagaaattagcttataaccttacaaaagaacaaaacataatttctacccattttgt--gtcactcacact 98  Q
    ||||| |||||||||||||||| | ||| ||||||||||||||| || || | |||| ||| | || |||||| |||| ||||| |  ||||||||||||    
T  5112301 actaatatgaaagtgttacaaatgggttacaagaaattagcttaaaaactcataaaa-aacgagacctaatttgtacctattttttaagtcactcacact 5112399  T
Q  99 ctcaatgaatcctaagagaaaacacacaaggaagctttttgatccttccaatggtgaaatctcactacctaaggtgtttacaatgttttccaaccc 194  Q
    | |||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||    
T  5112400 cacaatgaatcctaagagaaaacataaaaggaagctttttgatccttccaatggtgaaatctcactacccaaggtgtttacaatgtttcccaaccc 5112495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 39774338 - 39774146
Alignment:
Q  1 actaagatgaaagtgttacaaaagagttgcaagaaattagcttataaccttacaaaagaacaaaacataatttctacccattttg-tgtcactcacactc 99  Q
    ||||| ||||||||| ||||||   ||| ||||||||||||||| || || |||||  ||||| || ||||||||||| |||||  ||||||||||||||    
T  39774338 actaaaatgaaagtgatacaaataggttacaagaaattagcttaaaagctcacaaagaaacaagacctaatttctaccaattttcatgtcactcacactc 39774239  T
Q  100 tcaatgaatcctaagagaaaacacacaaggaagctttttgatccttccaatggtgaaatctcactacctaaggtgtttacaatgttttccaac 192  Q
    ||||||||||| ||||||||| ||| ||||||||||||||||| |||||||||||||| ||||||||| |||||||||||||||||| |||||    
T  39774238 tcaatgaatcccaagagaaaatacaaaaggaagctttttgatcattccaatggtgaaaactcactacccaaggtgtttacaatgtttcccaac 39774146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 1 - 181
Target Start/End: Original strand, 54867247 - 54867427
Alignment:
Q  1 actaagatgaaagtgttacaaaagagttgcaagaaattagcttataaccttacaaaagaacaaaacataatttctacccattttgtgtcactcacactct 100  Q
    |||| ||||||| |||||||||| ||||  ||||||||||||||||| |||||| |||||||| || |||||||||||||||||||||||  ||||  ||    
T  54867247 actatgatgaaaatgttacaaaatagttataagaaattagcttataagcttacacaagaacaatacctaatttctacccattttgtgtcatccaca--ct 54867344  T
Q  101 caatgaatcctaagagaaaacac--acaaggaagctttttgatccttccaatggtgaaatctcactacctaaggtgtttacaa 181  Q
    |||||||||||||||||||||||  | ||| |||||||||||||||||||||||||||||||||||||| |  ||||||||||    
T  54867345 caatgaatcctaagagaaaacacaaaaaagaaagctttttgatccttccaatggtgaaatctcactacccatagtgtttacaa 54867427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 36315262 - 36315069
Alignment:
Q  1 actaagatgaaagtgttacaaaagagttgcaagaaattagcttataaccttacaaaagaacaaaacataatttctacccattttgtgtcactcacactct 100  Q
    |||| ||||||||||||||||| ||||| ||||||||||||||| || |||||| |||| ||| || |||||||||||||||| |||| || ||||||||    
T  36315262 actatgatgaaagtgttacaaa-gagttacaagaaattagcttagaagcttacacaagagcaagacctaatttctacccattt-gtgttacccacactct 36315165  T
Q  101 caat---gaatcctaagagaaaacacacaaggaagctttttgatccttccaatggtgaaatctcactacctaaggtgtttacaatgttttccaaccc 194  Q
    ||||   |||||||| || |||||||| |||||||||||| ||||||||||||||| ||||||||||||| || ||||||||||||||| |||||||    
T  36315164 caataatgaatcctacgaaaaaacacaaaaggaagctttt-gatccttccaatggttaaatctcactacccaatgtgtttacaatgtttcccaaccc 36315069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 36329471 - 36329278
Alignment:
Q  1 actaagatgaaagtgttacaaaagagttgcaagaaattagcttataaccttacaaaagaacaaaacataatttctacccattttgtgtcactcacactct 100  Q
    |||| ||||||||||||||||| ||||| ||||||||||||||| || |||||| |||| ||| || |||||||||||||||| |||| || ||||||||    
T  36329471 actatgatgaaagtgttacaaa-gagttacaagaaattagcttagaagcttacacaagagcaagacctaatttctacccattt-gtgttacccacactct 36329374  T
Q  101 caat---gaatcctaagagaaaacacacaaggaagctttttgatccttccaatggtgaaatctcactacctaaggtgtttacaatgttttccaaccc 194  Q
    ||||   |||||||| || |||||||| |||||||||||| ||||||||||||||| ||||||||||||| || ||||||||||||||| |||||||    
T  36329373 caataatgaatcctacgaaaaaacacaaaaggaagctttt-gatccttccaatggttaaatctcactacccaatgtgtttacaatgtttcccaaccc 36329278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 190
Target Start/End: Original strand, 18377423 - 18377613
Alignment:
Q  1 actaagatgaaagtgttacaaaagagttgcaagaaattagcttataaccttacaaaagaacaaaacataatttctacccattttg-tgtcactcacactc 99  Q
    ||||||||||||||| |||||| | |||  ||||||| |||||| || || |||||  |||||  | |||||||||||||||||  |||||| ||||||     
T  18377423 actaagatgaaagtgatacaaatgggttataagaaatcagcttaaaagctcacaaagaaacaagccctaatttctacccattttcatgtcacccacactt 18377522  T
Q  100 tcaatgaatcctaagagaaaacacacaaggaagctttttgatccttccaatggtgaaatctcactacctaaggtgtttacaatgttttcca 190  Q
     ||||||||||||||| |||||||| || ||||||||||||||||||||||||| |||||||| |||| |||| |||||||||||||||||    
T  18377523 acaatgaatcctaagaaaaaacacaaaatgaagctttttgatccttccaatggtaaaatctcattacccaaggggtttacaatgttttcca 18377613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 68 - 194
Target Start/End: Complemental strand, 16628838 - 16628711
Alignment:
Q  68 taatttctacccattttgtgtcactcacactctcaat--gaatcctaagagaaaacacacaaggaagctttttgatccttccaatggtgaaatctcacta 165  Q
    |||||||||||||||||||||||| ||| ||| ||||  ||||||||| |||||||||| |||||||||||| |||||||||||||||||||||||||||    
T  16628838 taatttctacccattttgtgtcacccactctcacaatatgaatcctaaaagaaaacacaaaaggaagctttt-gatccttccaatggtgaaatctcacta 16628740  T
Q  166 cctaaggtgtttacaatgttttccaaccc 194  Q
    || |||||||||||||||||| |||||||    
T  16628739 cccaaggtgtttacaatgtttcccaaccc 16628711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 103 - 200
Target Start/End: Complemental strand, 3794010 - 3793913
Alignment:
Q  103 atgaatcctaagagaaaacacacaaggaagctttttgatccttccaatggtgaaatctcactacctaaggtgtttacaatgttttccaaccctcaaga 200  Q
    |||||||||||||| ||||||| |||||||||||||||||||| | ||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  3794010 atgaatcctaagagcaaacacaaaaggaagctttttgatcctttctatggtgaaatctcactacccaaggtgtttacaatgttttccaaccctcaaga 3793913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 5396704 - 5396510
Alignment:
Q  1 actaagatgaaagtgttacaaaagagttgcaagaaattagcttataaccttacaaaagaacaaaacataatttctacccattttgtgtcactcacactct 100  Q
    |||| |||||||||||| |||| ||||| ||||||| ||||||  || |||||| |||||||| || |||||||||||||||| |||| |||||| ||||    
T  5396704 actatgatgaaagtgttgcaaa-gagttacaagaaaatagcttgcaagcttacacaagaacaagacctaatttctacccattt-gtgttactcactctct 5396607  T
Q  101 caatga---atcctaa-gagaaaacacacaaggaagctttttgatccttccaatggtgaaatctcactacctaaggtgtttacaatgttttccaaccc 194  Q
    ||||||   | ||||| ||||| ||||| ||| |||||||| ||| ||||||||||||||||||||||||| |||||||||||||||||| |||||||    
T  5396606 caatgatgaaccctaaagagaagacacaaaagaaagctttt-gattcttccaatggtgaaatctcactacccaaggtgtttacaatgtttcccaaccc 5396510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 5143323 - 5143515
Alignment:
Q  1 actaagatgaaagtgttacaaaagagttgcaagaaattagcttataaccttacaaaagaacaaaacataatttctacccattttgtgtcactcacactct 100  Q
    |||| |||||||||||||||||| | || ||||||| ||||||  || | |||| |||||||| || |||||||||| ||||||||||||  ||| |||     
T  5143323 actatgatgaaagtgttacaaaaaatttacaagaaaatagcttgcaagcatacacaagaacaagacctaatttctactcattttgtgtcagccactctca 5143422  T
Q  101 caat--gaatcctaa-gagaaaacacacaaggaagctttttgatccttccaatggtgaaatctcactacctaaggtgtttacaatgttttccaa 191  Q
     |||  ||| ||||| ||||||||||| |||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |||| ||||    
T  5143423 gaatatgaaccctaaagagaaaacacaaaaggaagcttat-gatccttccaatggtgaaatctcactacctaaggtgtttacaaagtttcccaa 5143515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 6 - 192
Target Start/End: Original strand, 5147746 - 5147934
Alignment:
Q  6 gatgaaagtgttacaaaagagttgcaagaaattagcttataaccttacaaaagaacaaaacataatttctacccattttgtgtcactcacactctca--a 103  Q
    |||||||||||||||||| |||| ||||||| ||||||  || |||||| ||||||||  | |||||||||||||||||||||||| ||  ||| ||  |    
T  5147746 gatgaaagtgttacaaaatagttacaagaaaatagcttgcaagcttacacaagaacaaggcctaatttctacccattttgtgtcacccattctcacaata 5147845  T
Q  104 tgaatcct-aagagaaaacacacaaggaagctttttgatccttccaatggtgaaatctcactacctaaggtgtttacaatgttttccaac 192  Q
    |||| ||| ||||||||||||| |||||||| || ||||||||||||||||||||||||| || | || ||||||||||||||| |||||    
T  5147846 tgaaccctaaagagaaaacacaaaaggaagc-ttatgatccttccaatggtgaaatctcattatccaatgtgtttacaatgtttcccaac 5147934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 1 - 185
Target Start/End: Complemental strand, 1983333 - 1983148
Alignment:
Q  1 actaagatgaaagtgttacaaaagagttgcaagaaattagcttataaccttacaaaagaacaaaacataatttctacccattttgt-gtcactcacactc 99  Q
    |||| ||| |||||| |||||| | ||| ||||||||||||||  || || ||||| ||||||||||||||||||| || ||||   |||||  ||||||    
T  1983333 actaggatcaaagtgatacaaaggggttacaagaaattagcttgcaagctcacaaa-gaacaaaacataatttctatcctttttcaagtcacctacactc 1983235  T
Q  100 tcaatgaatcctaagagaaaacacacaaggaagctttttgatccttccaatggtg-aaatctcactacctaaggtgtttacaatgtt 185  Q
    |||||||||||||||||||||| || ||||||||||||| ||||||||||||||| |||||| |||| | | |||||||||||||||    
T  1983234 tcaatgaatcctaagagaaaacccaaaaggaagcttttttatccttccaatggtgaaaatcttactaaccagggtgtttacaatgtt 1983148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 3796552 - 3796455
Alignment:
Q  1 actaagatgaaagtgttacaaaagagttgcaagaaattagcttataaccttacaaaagaacaaaacataatttctacccattttgtgtcactcacact 98  Q
    |||| ||||||||||||||||||||||| ||||||||||||||| || ||| || |||||||| || |||||||||||||||||||||||| ||||||    
T  3796552 actatgatgaaagtgttacaaaagagttacaagaaattagcttacaagcttgcacaagaacaagacctaatttctacccattttgtgtcacccacact 3796455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 21 - 194
Target Start/End: Complemental strand, 8689509 - 8689335
Alignment:
Q  21 aaagagttgcaagaaattagcttataaccttacaaaagaacaaaacataatttctacccattttgtgtcactcacactctcaatga---atcctaagaga 117  Q
    |||| ||| ||||||| ||||||  || |||||| |||||||| || ||||||||||| |||| ||||  | ||| ||||||||||   | |||||||||    
T  8689509 aaagtgttacaagaaaatagcttgcaagcttacacaagaacaagacctaatttctaccaattt-gtgtttcccactctctcaatgatgaaccctaagaga 8689411  T
Q  118 aaacacacaaggaagctttttgatccttccaatggtgaaatctcactacctaaggtgtttacaatgttttccaaccc 194  Q
    | ||||| |||||| ||||| ||||||||||||||||||||||||||| | |||||||||| ||||||| |||||||    
T  8689410 agacacaaaaggaaactttt-gatccttccaatggtgaaatctcactatccaaggtgtttaaaatgtttcccaaccc 8689335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 30 - 194
Target Start/End: Original strand, 37781955 - 37782122
Alignment:
Q  30 caagaaattagcttataaccttacaaaagaacaaaacataatttctacccattttgt--gtcactcacactc-tcaatgaatcctaagagaaaacacaca 126  Q
    ||||||||||||||| || || ||||| ||||||| | |||||||||||||||||    |||||  |||||| | |||||||| |||||||||||||  |    
T  37781955 caagaaattagcttaaaaactcacaaa-gaacaaatcttaatttctacccatttttcaagtcacctacactcgtaaatgaatcttaagagaaaacactaa 37782053  T
Q  127 aggaagctttttgatccttccaatggtgaaatctcactacctaaggtgtttac-aatgttttccaaccc 194  Q
    | ||  ||||||||| ||||||||  ||||||||||||||| ||||||||||| |||||||||||||||    
T  37782054 aagagactttttgattcttccaataatgaaatctcactacccaaggtgtttacaaatgttttccaaccc 37782122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 31985667 - 31985472
Alignment:
Q  1 actaagatgaaagtgttacaaaagagttgcaagaaat-tagcttataaccttacaaaagaacaaaacataatttctacccattttgtgtcactcacactc 99  Q
    |||| ||||||||||||||||| | ||| |||||||  ||||||  || |||||| ||||||||  | |||||||||||||||| ||||  | ||| |||    
T  31985667 actatgatgaaagtgttacaaagg-gttacaagaaaaatagcttgcaagcttacacaagaacaagtcctaatttctacccattt-gtgtttcccactctc 31985570  T
Q  100 tcaatg--aatcctaa--gagaaaacacacaaggaagctttttgatccttccaatggtgaaatctcactacctaaggtgtttacaatgttttccaaccc 194  Q
     |||||  || |||||  ||||| ||||| |||||||||||| ||||||||| |||||||||| |||||||| |||||||||||||||||| |||||||    
T  31985569 acaatgtgaaccctaaaagagaagacacaaaaggaagctttt-gatccttcccatggtgaaatttcactacccaaggtgtttacaatgtttcccaaccc 31985472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 16630713 - 16630651
Alignment:
Q  1 actaagatgaaagtgttacaaaagagttgcaagaaattagcttataaccttacaaaagaacaa 63  Q
    |||| ||||||||||||||||||||||| |||||||||||||||||| |||||| ||||||||    
T  16630713 actatgatgaaagtgttacaaaagagttacaagaaattagcttataagcttacacaagaacaa 16630651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 30 - 181
Target Start/End: Complemental strand, 34670669 - 34670517
Alignment:
Q  30 caagaaattagcttataaccttacaaaagaacaaaacataatttctacccattttgt--gtcactcacactctcaatgaatcctaagagaaaacacacaa 127  Q
    |||||||||||||||  | || ||||| ||||||| ||||||||||| |||||||    ||||||||||||| |||||||||||||||||||||||  ||    
T  34670669 caagaaattagcttaatagctcacaaa-gaacaaatcataatttctatccatttttcaagtcactcacactcacaatgaatcctaagagaaaacactaaa 34670571  T
Q  128 ggaagctttttgatccttccaatggtgaaatctcactacctaaggtgtttacaa 181  Q
    | || ||||| |||||||||  |  ||| ||||||||||| ||| || ||||||    
T  34670570 gaaaacttttagatccttcctctaatgagatctcactacccaagatgcttacaa 34670517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 112 - 187
Target Start/End: Complemental strand, 28468456 - 28468382
Alignment:
Q  112 aagagaaaacacacaaggaagctttttgatccttccaatggtgaaatctcactacctaaggtgtttacaatgtttt 187  Q
    ||||||| |||||  ||||||||||  ||||||||||||||||||||||||||||| |||||||||||||| ||||    
T  28468456 aagagaagacacaagaggaagcttta-gatccttccaatggtgaaatctcactacccaaggtgtttacaatatttt 28468382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 87 - 139
Target Start/End: Original strand, 39593878 - 39593930
Alignment:
Q  87 gtcactcacactctcaatgaatcctaagagaaaacacacaaggaagctttttg 139  Q
    |||||||| || | ||||||||||||||||||| ||| |||||||||||||||    
T  39593878 gtcactcaaacccacaatgaatcctaagagaaaccactcaaggaagctttttg 39593930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 181
Target Start/End: Complemental strand, 873440 - 873370
Alignment:
Q  111 taagagaaaacacacaaggaagctttttgatccttccaatggtgaaatctcactacctaaggtgtttacaa 181  Q
    |||||||||||||| || |||||||||||||||| ||  |  ||| ||||||||||  |||||||||||||    
T  873440 taagagaaaacacaaaatgaagctttttgatcctccctctaatgagatctcactactcaaggtgtttacaa 873370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 39246058 - 39246094
Alignment:
Q  1 actaagatgaaagtgttacaaaagagttgcaagaaat 37  Q
    |||| ||||||||||||||||||||||| ||||||||    
T  39246058 actatgatgaaagtgttacaaaagagttacaagaaat 39246094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0148 (Bit Score: 111; Significance: 3e-56; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 10793 - 10995
Alignment:
Q  1 actaagatgaaagtgttacaaaagagttgcaagaaattagcttataaccttacaaaagaacaaaacataatttctacccattttgtgtcactcacactc- 99  Q
    |||||||||||||||||||||||||||| ||||||||||| ||| || |||||| |||||||| || ||||||||| | |||||||||||| ||| |||     
T  10793 actaagatgaaagtgttacaaaagagttacaagaaattagtttacaagcttacacaagaacaagacctaatttctatctattttgtgtcacccactctca 10892  T
Q  100 tca-atgaatcctaagagaaaacacacaag-gaagctttttgatccttccaatggtgaaatctcactacctaaggtgtttacaatgttttccaaccctca 197  Q
    | | |||||||||||||||||||| | ||  ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||    
T  10893 tgatatgaatcctaagagaaaacagaaaaaagaagctttttgatccttccaatggtgaaatctcactacccaaggtgtttacaatgtttcccaaccctca 10992  T
Q  198 aga 200  Q
    |||    
T  10993 aga 10995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0176 (Bit Score: 103; Significance: 2e-51; HSPs: 1)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 6 - 191
Target Start/End: Original strand, 17332 - 17506
Alignment:
Q  6 gatgaaagtgttacaaaagagttgcaagaaattagcttataaccttacaaaagaacaaaacataatttctacccattttgtgtcactcacactctcaatg 105  Q
    ||||||||||||||||||||||| |||||||||||||||||| |||||| |||||||| || ||||||||||| ||||||||||||||||||||| ||||    
T  17332 gatgaaagtgttacaaaagagttacaagaaattagcttataagcttacacaagaacaagacctaatttctacctattttgtgtcactcacactcttaatg 17431  T
Q  106 aatcctaagagaaaacacacaaggaagctttttgatccttccaatggtgaaatctcactacctaaggtgtttacaatgttttccaa 191  Q
    ||||||||||||||||||| ||||||| |||||||          ||||||||||||||||| |||||||||||||||||| ||||    
T  17432 aatcctaagagaaaacacaaaaggaag-tttttga----------ggtgaaatctcactacccaaggtgtttacaatgtttcccaa 17506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 89; Significance: 4e-43; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 6 - 194
Target Start/End: Original strand, 85752 - 85941
Alignment:
Q  6 gatgaaagtgttacaaaagagttgcaagaaattagcttataaccttacaaaagaacaaaacataatttctacccattttgtgtcactcacactctca--a 103  Q
    ||||||||||||||||| ||||| ||||||||||||||| || |||||| |||| ||| || |||||||||||||||||||||| | ||| | | ||  |    
T  85752 gatgaaagtgttacaaa-gagttacaagaaattagcttaaaagcttacacaagagcaagacctaatttctacccattttgtgtctcccactcccacaata 85850  T
Q  104 tgaatcctaagag-aaaacacacaaggaagctttttgatccttccaatggtgaaatctcactacctaaggtgtttacaatgttttccaaccc 194  Q
    ||||| ||||||| |||||||| ||||||| |||||||||||||||||||||||||||||||||| || ||||||||||||||| |||||||    
T  85851 tgaattctaagagaaaaacacaaaaggaag-tttttgatccttccaatggtgaaatctcactacccaaagtgtttacaatgtttcccaaccc 85941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0087 (Bit Score: 84; Significance: 4e-40; HSPs: 2)
Name: scaffold0087
Description:

Target: scaffold0087; HSP #1
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 36865 - 36671
Alignment:
Q  1 actaagatgaaagtgttacaaaagagttgcaagaaattagcttataaccttacaaaagaacaaaacataatttctacccattttgtgtcactcacactct 100  Q
    |||| ||||||||||||||||| ||||| ||||||| ||||||  || |||||| |||||||| |||| |||||||||||||| ||||  | ||| ||||    
T  36865 actatgatgaaagtgttacaaa-gagttacaagaaaatagcttgcaagcttacacaagaacaagacatgatttctacccattt-gtgtttcccactctct 36768  T
Q  101 caat---gaatcctaa-gagaaaacacacaaggaagctttttgatccttccaatggtgaaatctcactacctaaggtgtttacaatgttttccaaccc 194  Q
    ||||   ||| ||||| ||||| ||||| |||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  36767 caataatgaaccctaaagagaagacacaaaaggaagctttt-gatccttccaatggtgaaatctcactacccaaggtgtttacaatgttttccaaccc 36671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0087; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 43994 - 43800
Alignment:
Q  1 actaagatgaaagtgttacaaaagagttgcaagaaattagcttataaccttacaaaagaacaaaacataatttctacccattt-tgtgtcactcacactc 99  Q
    |||| ||||||||||||||||| ||||| ||||||| ||||||  || |||| | |||||||| || |||||||||||||||| |||  ||||| | |||    
T  43994 actatgatgaaagtgttacaaa-gagttacaagaaaatagcttgcaagcttatacaagaacaagacctaatttctacccatttgtgttccactctctctc 43896  T
Q  100 tc-aatgaatcctaa-gagaaaacacacaaggaagctttttgatccttccaatggtgaaatctcactacctaaggtgtttacaatgttttccaaccc 194  Q
       |||||| ||||| ||||| ||||| |||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |||||||    
T  43895 aataatgaaccctaaagagaagacacaaaaggaagctttt-gatccttccaatggtgaaatctcactacccaaggtgtttacaatgtttcccaaccc 43800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078 (Bit Score: 61; Significance: 2e-26; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 68 - 194
Target Start/End: Original strand, 23662 - 23790
Alignment:
Q  68 taatttctacccattttg-tgtcactcacactctcaatgaatcctaagagaaaacacacaaggaagc-tttttgatccttccaatggtgaaatctcacta 165  Q
    |||||||||||||||||  |||||  ||||||| |||||||||||||||||||||||| || || || ||||| ||||||| |||||||| |||||||||    
T  23662 taatttctacccattttcatgtcagacacactcacaatgaatcctaagagaaaacacaaaatgatgccttttttatccttctaatggtgacatctcacta 23761  T
Q  166 cctaaggtgtttacaatgttttccaaccc 194  Q
    || |||||| ||||||| |||||||||||    
T  23762 cccaaggtgattacaattttttccaaccc 23790  T

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Target: scaffold0140 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 8452 - 8256
Alignment:
Q  1 actaagatgaaagtgttacaaaagagttgcaagaaat-tagcttataaccttacaaaagaacaaaacataatttctacccattttgtgtcactcacactc 99  Q
    |||| ||||||||||||||||| ||||| |||||||  ||||||  || |||||| |||||||| || ||||||||||  |||| ||||  | ||| |||    
T  8452 actatgatgaaagtgttacaaa-gagttacaagaaaaatagcttgcaagcttacacaagaacaagacctaatttctacgtattt-gtgtttcccactctc 8355  T
Q  100 tcaat---gaatcctaa--gagaaaacacacaaggaagctttttgatccttccaatggtgaaatctcactacctaaggtgtttacaatgttttccaaccc 194  Q
    |||||   ||| |||||  ||||| ||||| ||||||||||||  |||||||||||||||||||||||||||| |||||||||||||||||| |||||||    
T  8354 tcaataatgaaccctaaaagagaagacacaaaaggaagctttta-atccttccaatggtgaaatctcactacccaaggtgtttacaatgtttcccaaccc 8256  T

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Target: scaffold0098 (Bit Score: 55; Significance: 9e-23; HSPs: 1)
Name: scaffold0098
Description:

Target: scaffold0098; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 112 - 186
Target Start/End: Original strand, 45375 - 45448
Alignment:
Q  112 aagagaaaacacacaaggaagctttttgatccttccaatggtgaaatctcactacctaaggtgtttacaatgttt 186  Q
    ||||||| ||||| |||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||    
T  45375 aagagaagacacaaaaggaagctttt-gatccttccaatggtgaaatctcactacccaaggtgtttacaatgttt 45448  T

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Target: scaffold0188 (Bit Score: 44; Significance: 3e-16; HSPs: 2)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 112 - 187
Target Start/End: Complemental strand, 17870 - 17796
Alignment:
Q  112 aagagaaaacacacaaggaagctttttgatccttccaatggtgaaatctcactacctaaggtgtttacaatgtttt 187  Q
    ||||||| |||||  ||||||||||  ||||||||||||||||||||||||||||| |||||| ||||||||||||    
T  17870 aagagaagacacaagaggaagcttta-gatccttccaatggtgaaatctcactacccaaggtgattacaatgtttt 17796  T

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Target: scaffold0188; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 112 - 187
Target Start/End: Complemental strand, 23963 - 23889
Alignment:
Q  112 aagagaaaacacacaaggaagctttttgatccttccaatggtgaaatctcactacctaaggtgtttacaatgtttt 187  Q
    ||||||| |||||  ||||||||||  ||||||||||||||||||||||||||||| |||||| ||||||||||||    
T  23963 aagagaagacacaagaggaagcttta-gatccttccaatggtgaaatctcactacccaaggtgattacaatgtttt 23889  T

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Target: scaffold0016 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 30 - 195
Target Start/End: Complemental strand, 102498 - 102331
Alignment:
Q  30 caagaaattagcttataaccttacaaaagaacaaaacataatttctacccattttgt--gtcactcacactctcaatgaatcctaagagaaaacacacaa 127  Q
    |||||||||| |||| || || |||||| |||||| | |||||||||||||||||    ||||| |||||||  ||| ||| | ||||||||||||  ||    
T  102498 caagaaattatcttaaaagctcacaaaa-aacaaaccctaatttctacccatttttcaagtcacacacactcataataaattcgaagagaaaacactaaa 102400  T
Q  128 ggaagctttttgatccttccaatggtgaaatctcactacctaaggtgtttac-aatgttttccaaccct 195  Q
    ||| ||||||||||||||||  |  | |||||| |||  | ||||||||| | ||||||||||||||||    
T  102399 ggatgctttttgatccttcctctaataaaatcttacttaccaaggtgttttcaaatgttttccaaccct 102331  T

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Target: scaffold0002 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 194
Target Start/End: Original strand, 14852 - 14941
Alignment:
Q  104 tgaatcctaagagaaaacacacaaggaagctttttgatccttccaatggtgaaatctcactacctaaggtgtttac-aatgttttccaaccc 194  Q
    ||||||||||||||||||||  |||||   |||||||| ||||||||  | ||||||||| ||| ||||| ||||| ||||||| |||||||    
T  14852 tgaatcctaagagaaaacactaaagga--gtttttgatgcttccaataataaaatctcaccaccaaaggtatttacaaatgtttcccaaccc 14941  T

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