View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12658_low_4 (Length: 507)
Name: NF12658_low_4
Description: NF12658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12658_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 426; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 12 - 493
Target Start/End: Original strand, 5676941 - 5677422
Alignment:
| Q |
12 |
atgaatgaatgcatagttgcaataatcaatagaagaattttgagtttgcaaaggaagattacgatccatgaaggaaaagagtgagatgctcaaaatattc |
111 |
Q |
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| T |
5676941 |
atgaatgaaagcatagttgcaataatcaatagaagaattttgagtttgcaaaggaagattacgatccatgaaggaaaagagtgagatgctcaaaatattc |
5677040 |
T |
|
| Q |
112 |
ctaaaactaaaagaaatggctctcatgctcataaacagatgagagattgtgagatggctagtggatgttaaccctaactgaaaacgaccgatcaatttgg |
211 |
Q |
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||||||||| |||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||| ||| ||||||| ||||||||||| |
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| T |
5677041 |
ctaaaactataagaaatggctctcatgctcatcaacagatgggagattgtgagatgtctagtggatgttaaccctagctggaaacgactgatcaatttgg |
5677140 |
T |
|
| Q |
212 |
atgacaaacttcagacctttgaaataacattccattgtccttttatagtacatgtatttcctttatccaggttatgctttttggtaattttccatccacc |
311 |
Q |
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|||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
5677141 |
atgacaaacttcggacctttgaaataacattgcattgtccttttatagtacatgtatttcctttatccaggttatgctttttggtaatttcccatccacc |
5677240 |
T |
|
| Q |
312 |
aataaagattattactataaatctgattgtaatcatctttgtaacaaccttcgggtcacacttcataagaagcttacgaaacccacattccaagccaact |
411 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
5677241 |
aataaggattattactataaatctgattgtaatcatctttgtaacaaccttcgggtcacacttcataagaatcttacgaaacccacattccaagccaact |
5677340 |
T |
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| Q |
412 |
ccaatttagtaagatgtccccaaagatctcacataaggacatttgaggtatacaaatcacgaacaaagtcagtacaccattg |
493 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
5677341 |
ccaatttagtaagatgtccccaaagatctcacataaggacatttgaggtatccaaatcacgaacaaagtcagtacaccattg |
5677422 |
T |
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