View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12658_low_6 (Length: 496)
Name: NF12658_low_6
Description: NF12658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12658_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 405; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 1 - 480
Target Start/End: Original strand, 1628933 - 1629415
Alignment:
| Q |
1 |
gagatgaaggagatgagcaactgccaaaggcgatgcatggcctcatgcacctcgcgcataggacttaattttatatatattttttaaaggacaggatgct |
100 |
Q |
| |
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||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |||||| |
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| T |
1628933 |
gagatcaaggagatgagcaactgccacaggcgatgcatggcctcatgcacctcgcgcataggacttaattttatatatatttttaaaatgacaagatgct |
1629032 |
T |
|
| Q |
101 |
tatttgttacttagtttctgacatattgactttttaaacatagatccgtcggatcatcaaagttgaacttgttaagtagtacaaaattaaagaatatgaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
1629033 |
tatttgttacttagtttctgacatattgactttttaaacatagatccgctggatcatcaaagttgaacttgtaaagtagtacaaaattaaagaatatgaa |
1629132 |
T |
|
| Q |
201 |
taat---atctctctcaatatacaaattaaagaatattgacacattttctttttagaattacaatgaatttaattacagataactatgtagaataattga |
297 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
1629133 |
taattatatctctctcaatatacaaattaaagaatattgacacattttcttttaagaattacaatgaatttaattacaaataactatgtagaataattga |
1629232 |
T |
|
| Q |
298 |
cttaatgaagagatatagctataccataaaacaaatgatcaaagaccagatgtaaatggcacagtagttgtagccaaccatgttggtccagcaaggagtc |
397 |
Q |
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||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1629233 |
attaatgaagagatatagctataccaaaatacaaatgatcaaagaccagatgtaaatggcacagtagttgtagccaaccatgttggtccagcaaggagtc |
1629332 |
T |
|
| Q |
398 |
cagtaaccgtaaactttgatgcttcctttgggtttgttatcacatgataaccaggccatttcaccctgtttgctgttgatgaa |
480 |
Q |
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| T |
1629333 |
cagcaaccgtaaactttgatgcttcctttgggtttgatatcacatgataaccaggccatttcaccctatttgctgttgatgaa |
1629415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 252 - 480
Target Start/End: Original strand, 1605891 - 1606117
Alignment:
| Q |
252 |
agaattacaatgaatttaattacagataactatgtagaataattgacttaatgaagagatatagctataccataaaacaaatgatcaaagaccagatgta |
351 |
Q |
| |
|
|||||||||||||| ||||||||| | || || ||| ||||| ||| |||||||| ||| |||||| || || | |||||||||||||||||||||| |
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|
| T |
1605891 |
agaattacaatgaacttaattacaaagaattaagtacaataactgaggcaatgaagaaata--gctatagcacaacataaatgatcaaagaccagatgta |
1605988 |
T |
|
| Q |
352 |
aatggcacagtagttgtagccaaccatgttggtccagcaaggagtccagtaaccgtaaactttgatgcttcctttgggtttgttatcacatgataaccag |
451 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| || ||||||| ||||||||||||||||| |
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| T |
1605989 |
aatggcacagtagttgtagccaaccatgttggtccagcaaggagtccagcaaccgtaaactttgatgcttcattagggtttgatatcacatgataaccag |
1606088 |
T |
|
| Q |
452 |
gccatttcaccctgtttgctgttgatgaa |
480 |
Q |
| |
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||||||| || || ||||||||||||||| |
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|
| T |
1606089 |
gccattttactctatttgctgttgatgaa |
1606117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 328 - 480
Target Start/End: Complemental strand, 10821435 - 10821283
Alignment:
| Q |
328 |
acaaatgatcaaagaccagatgtaaatggcacagtagttgtagccaaccatgttggtccagcaaggagtccagtaaccgtaaactttgatgcttcctttg |
427 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| |
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| T |
10821435 |
acaaatgatcaaagaccagatgtaaatggcacagtagttttagccaaccatgttggaccagcaaggagtccagcaaccgtaaactttgatgcttcctttg |
10821336 |
T |
|
| Q |
428 |
ggtttgttatcacatgataaccaggccatttcaccctgtttgctgttgatgaa |
480 |
Q |
| |
|
|||||||||||||||||||||||||||| || |||||||||| |||||||||| |
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|
| T |
10821335 |
ggtttgttatcacatgataaccaggccaatttaccctgtttgttgttgatgaa |
10821283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 312 - 480
Target Start/End: Original strand, 1623071 - 1623239
Alignment:
| Q |
312 |
atagctataccataaaacaaatgatcaaagaccagatgtaaatggcacagtagttgtagccaaccatgttggtccagcaaggagtccagtaaccgtaaac |
411 |
Q |
| |
|
||||||||| || || | |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
1623071 |
atagctatagcacaacataaatgatcaaagaccagatgtaaatggcacggtagttgtagccaaccatgttggtccagcaaggagtccagcaaccgtaaac |
1623170 |
T |
|
| Q |
412 |
tttgatgcttcctttgggtttgttatcacatgataaccaggccatttcaccctgtttgctgttgatgaa |
480 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||| || || |||| |||||||||| |
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|
| T |
1623171 |
tttgatgcttcctttcggtttgttatcacatgataaccaggccattttactctatttgttgttgatgaa |
1623239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 7 - 275
Target Start/End: Complemental strand, 10821701 - 10821438
Alignment:
| Q |
7 |
aaggagatgagcaactgccaaaggcgatgcatggcctcatgcacctcgcgcataggacttaattttatatatattttttaaaggacaggatgcttatttg |
106 |
Q |
| |
|
||||||||||||||||| || |||| |||||||||||||| ||||||||||||||||| || ||| | | ||||| ||| ||| ||| |||||||| |
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|
| T |
10821701 |
aaggagatgagcaactgtcacgcgcgacgcatggcctcatgcgcctcgcgcataggactt--ttctattttt-tttttaaaattacaagattcttatttg |
10821605 |
T |
|
| Q |
107 |
ttacttagtttctgacatattgactttttaaacatagatccgtcggatcatcaaagttgaacttgttaagtagtacaaaattaaagaatatgaataata- |
205 |
Q |
| |
|
|||| |||||| ||| |||||||||||||||||||| ||| || | |||||||||| ||||||||| |||| ||||||| |||||||||||||| |
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| T |
10821604 |
ttacatagtttatgatatattgactttttaaacatatatcagttgaatcatcaaaggtgaacttgtaaagttgtacaaag-----gaatatgaataataa |
10821510 |
T |
|
| Q |
206 |
--tctctctcaatatacaaattaaagaatattgacacattttctttttagaattacaatgaatttaattaca |
275 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||| ||||| | |||||||||||||||||||||| |
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|
| T |
10821509 |
tatctctctcaatatacaaattaaagaatattgactcatgttcttacaaaaattacaatgaatttaattaca |
10821438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 126; Significance: 9e-65; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 252 - 480
Target Start/End: Original strand, 18780707 - 18780933
Alignment:
| Q |
252 |
agaattacaatgaatttaattacagataactatgtagaataattgacttaatgaagagatatagctataccataaaacaaatgatcaaagaccagatgta |
351 |
Q |
| |
|
|||||||||||||||||||||||| | || || ||| ||||||||| |||||||| ||| |||||| || || | ||| |||||||||||||||||| |
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|
| T |
18780707 |
agaattacaatgaatttaattacaaagaattaagtacaataattgaagcaatgaagaaata--gctatagcacaacataaaagatcaaagaccagatgta |
18780804 |
T |
|
| Q |
352 |
aatggcacagtagttgtagccaaccatgttggtccagcaaggagtccagtaaccgtaaactttgatgcttcctttgggtttgttatcacatgataaccag |
451 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||| || |||||||| |||||||||||||||||||||||| |||||||||||| |||||||||||| |
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|
| T |
18780805 |
aatggcacagtagttgtagccagccatgttggtccagtaatgagtccagcaaccgtaaactttgatgcttccttagggtttgttatcgcatgataaccag |
18780904 |
T |
|
| Q |
452 |
gccatttcaccctgtttgctgttgatgaa |
480 |
Q |
| |
|
||||||| || || ||||||||||||||| |
|
|
| T |
18780905 |
gccattttactctatttgctgttgatgaa |
18780933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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