View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12658_low_9 (Length: 439)
Name: NF12658_low_9
Description: NF12658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12658_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 151; Significance: 1e-79; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 11 - 190
Target Start/End: Original strand, 27309028 - 27309203
Alignment:
| Q |
11 |
caaagggatactaaaccaaacagttaaggattggatggacagcccaacattagccaacttgtctgcaatttgatttccctccctatatatatgagttacc |
110 |
Q |
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| T |
27309028 |
caaagggatactaaaccaaacaat----gattggatggacagcccaacattagccaacttgtctgcaatttgatttccctccctatatatatgagttacc |
27309123 |
T |
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| Q |
111 |
attaagttcatattactagcaagaagcttgcaattgtcccacctgttacgaatacagcaaggaatgatcacaggagactt |
190 |
Q |
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| T |
27309124 |
attaagttcatattactagcaagaagcttgcaattgtcccacttgttacgaatatagcaaggaatgatcacaggagactt |
27309203 |
T |
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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 54 - 238
Target Start/End: Original strand, 12105745 - 12105929
Alignment:
| Q |
54 |
ccaacattagccaacttgtctgcaatttgatttccctccctatatatatgagttaccattaagttcatattactagcaagaagcttgcaattgtcccacc |
153 |
Q |
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| T |
12105745 |
ccaacatttgccaacttgtcagcacattgatttctctcctcgtaaatatgagtaaccattaaattcatgctaatagtgagcagtttgcagttttcccacc |
12105844 |
T |
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| Q |
154 |
tgttacgaatacagcaaggaatgatcacaggagacttaaaagcatgaacaaccaatgaagaatcagtctcaatccaaaggtttct |
238 |
Q |
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| T |
12105845 |
tgtttcttacactgcaaggaatgattgcagaagacttggaagcatgaaccacatgagatgaatccgtctcaatccaaagatttct |
12105929 |
T |
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