View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12659_high_11 (Length: 429)

Name: NF12659_high_11
Description: NF12659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12659_high_11
NF12659_high_11
[»] chr5 (2 HSPs)
chr5 (47-378)||(26595666-26596015)
chr5 (375-409)||(26595612-26595646)
[»] chr3 (2 HSPs)
chr3 (230-275)||(26707554-26707599)
chr3 (232-268)||(27604509-27604545)
[»] chr6 (2 HSPs)
chr6 (230-274)||(22714033-22714077)
chr6 (231-264)||(33319271-33319304)
[»] chr2 (3 HSPs)
chr2 (234-282)||(5771527-5771575)
chr2 (232-261)||(160778-160807)
chr2 (233-278)||(27557165-27557209)
[»] chr1 (1 HSPs)
chr1 (230-260)||(4631402-4631432)
[»] chr7 (1 HSPs)
chr7 (231-283)||(7874417-7874469)
[»] chr4 (1 HSPs)
chr4 (230-262)||(3267856-3267888)


Alignment Details
Target: chr5 (Bit Score: 262; Significance: 1e-146; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 47 - 378
Target Start/End: Complemental strand, 26596015 - 26595666
Alignment:
Q  47 tagtgtcataaaatgatgatatgcaaataataattgtatatttctcaaattcatggagttcttcatcaattagagcactcttcggtgactcacattgttt 146  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26596015 tagtgtcataaaatgatgatatgcaaataataattgtatatttctcaaattcatggagttcttcatcaattagagcactcttcggtgactcacattgttt 26595916  T
Q  147 gtgaagctaatcagatgacatatgtttgtgctataagtttggcttaactattgttggacaactagtgagttatgatggaag-----------------ct 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||                  |    
T  26595915 gtgaagctaatcagatgacatatgtttgtgctataagtttggcttaactattgttggacaactagtgagttctgatggaagttggaaagaataaacacat 26595816  T
Q  230 ggaaagaactagtgtt-ggtatgaattgaaaaatgtcccatattggagagacatgtcattacttatttagtaagtgtgaaccccagattcctcacttcat 328  Q
    |||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  26595815 ggaaagaactagtgttgggtatgaattgaaaaatgtctcatattggagagacatgtcattactcatttagtaagtgtgaaccccagattcctcacttcat 26595716  T
Q  329 catatttatagtgtgagtctagtcactatggaaggagaggtcgatgtggt 378  Q
    |||||||||||||||||||||||||||| |||||||||||||||| ||||    
T  26595715 catatttatagtgtgagtctagtcactagggaaggagaggtcgatatggt 26595666  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 375 - 409
Target Start/End: Complemental strand, 26595646 - 26595612
Alignment:
Q  375 tggtatttgcctaatttgaagggaaggagaaggcg 409  Q
    |||||||| ||||||||||||||||||||||||||    
T  26595646 tggtattttcctaatttgaagggaaggagaaggcg 26595612  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 230 - 275
Target Start/End: Complemental strand, 26707599 - 26707554
Alignment:
Q  230 ggaaagaactagtgttggtatgaattgaaaaatgtcccatattgga 275  Q
    ||||||||||||||||||||| ||||||||||||||||| ||||||    
T  26707599 ggaaagaactagtgttggtatcaattgaaaaatgtcccacattgga 26707554  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 232 - 268
Target Start/End: Original strand, 27604509 - 27604545
Alignment:
Q  232 aaagaactagtgttggtatgaattgaaaaatgtccca 268  Q
    |||||| ||||||||||||||||||||||||||||||    
T  27604509 aaagaattagtgttggtatgaattgaaaaatgtccca 27604545  T

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Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 230 - 274
Target Start/End: Complemental strand, 22714077 - 22714033
Alignment:
Q  230 ggaaagaactagtgttggtatgaattgaaaaatgtcccatattgg 274  Q
    |||||||||||||||||||||||||||||||||||| || |||||    
T  22714077 ggaaagaactagtgttggtatgaattgaaaaatgtctcacattgg 22714033  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 231 - 264
Target Start/End: Complemental strand, 33319304 - 33319271
Alignment:
Q  231 gaaagaactagtgttggtatgaattgaaaaatgt 264  Q
    |||||||||||||||||||| |||||||||||||    
T  33319304 gaaagaactagtgttggtataaattgaaaaatgt 33319271  T

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Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 234 - 282
Target Start/End: Complemental strand, 5771575 - 5771527
Alignment:
Q  234 agaactagtgttggtatgaattgaaaaatgtcccatattggagagacat 282  Q
    ||||||||||||||||||||||||||||| || || |||||||||||||    
T  5771575 agaactagtgttggtatgaattgaaaaatatctcacattggagagacat 5771527  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 232 - 261
Target Start/End: Complemental strand, 160807 - 160778
Alignment:
Q  232 aaagaactagtgttggtatgaattgaaaaa 261  Q
    ||||||||||||||||||||||||||||||    
T  160807 aaagaactagtgttggtatgaattgaaaaa 160778  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 233 - 278
Target Start/End: Complemental strand, 27557209 - 27557165
Alignment:
Q  233 aagaactagtgttggtatgaattgaaaaatgtcccatattggagag 278  Q
    |||| |||||||||||||||||| |||||||||||| |||||||||    
T  27557209 aagatctagtgttggtatgaatt-aaaaatgtcccacattggagag 27557165  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 230 - 260
Target Start/End: Original strand, 4631402 - 4631432
Alignment:
Q  230 ggaaagaactagtgttggtatgaattgaaaa 260  Q
    |||||||||||||||||||||||||||||||    
T  4631402 ggaaagaactagtgttggtatgaattgaaaa 4631432  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 231 - 283
Target Start/End: Original strand, 7874417 - 7874469
Alignment:
Q  231 gaaagaactagtgttggtatgaattgaaaaatgtcccatattggagagacatg 283  Q
    |||| |||||||||||||||||||  |||||||||||| |||||  |||||||    
T  7874417 gaaaaaactagtgttggtatgaataaaaaaatgtcccacattgggtagacatg 7874469  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 230 - 262
Target Start/End: Complemental strand, 3267888 - 3267856
Alignment:
Q  230 ggaaagaactagtgttggtatgaattgaaaaat 262  Q
    |||||||||||||||||| ||||||||||||||    
T  3267888 ggaaagaactagtgttggcatgaattgaaaaat 3267856  T

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