View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12659_high_12 (Length: 413)
Name: NF12659_high_12
Description: NF12659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12659_high_12 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-122; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 182 - 404
Target Start/End: Complemental strand, 30767897 - 30767675
Alignment:
| Q |
182 |
ttttttgagaaccaatatcatagaattgagaattggaacaatgaaacaaccaatgattatataaagaaagttggattcatggtaaactcacagtcatttc |
281 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30767897 |
ttttttgagaaccaatatcatagaattgagaattggaacaatgaaacaaccaatgattatataaagaaagttggattcatggtaaactcacagtcatttc |
30767798 |
T |
|
| Q |
282 |
taggccaaggttccggttcagaatactctccaaacgagacccttcagtcaaatttttcgcattctgttagaacatggaatgagattcctatggattcttc |
381 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30767797 |
taggccaaggttccggttcagaatactctccaaacgagacccttcagtcaaatttttcgcattctgttagaacatggaatgagattcctatggattcttc |
30767698 |
T |
|
| Q |
382 |
ttcagaggttcatcatcacaggt |
404 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
30767697 |
ttcagaggttcatcatcacaggt |
30767675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 17 - 137
Target Start/End: Complemental strand, 30768062 - 30767942
Alignment:
| Q |
17 |
acatcttctacttcttcatccatcaattttcaaaactacccttctgaaaaccttggcctctctcttcattccttccaagatcacaatggtttcattccat |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30768062 |
acatcttctacttcttcatccatcaattttcaaaactacccttctgaaaaccttggcctctctcttcattccttccaagatcacaatggtttcattccat |
30767963 |
T |
|
| Q |
117 |
ggcaatcgcaacaagtatgtg |
137 |
Q |
| |
|
||||||| ||||||||||||| |
|
|
| T |
30767962 |
ggcaatcacaacaagtatgtg |
30767942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 184 - 294
Target Start/End: Complemental strand, 5053580 - 5053472
Alignment:
| Q |
184 |
ttttgagaaccaatatcatagaattgagaattggaacaatgaaacaaccaatgattatataaagaaagttggattcatggtaaactcacagtcatttcta |
283 |
Q |
| |
|
|||||||| ||||||| | ||||||| ||| |||| || ||||||||||| ||||||||||||||||||||||||||||||||||| | |||||||||| |
|
|
| T |
5053580 |
ttttgagagccaatataagagaattgtgaaatggagcagtgaaacaaccactgattatataaagaaagttggattcatggtaaact--cggtcatttcta |
5053483 |
T |
|
| Q |
284 |
ggccaaggttc |
294 |
Q |
| |
|
|| |||||||| |
|
|
| T |
5053482 |
ggtcaaggttc |
5053472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University