View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12659_high_15 (Length: 339)
Name: NF12659_high_15
Description: NF12659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12659_high_15 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 21 - 339
Target Start/End: Complemental strand, 44489817 - 44489499
Alignment:
| Q |
21 |
gaacacgctttaatctttggtatggaggaaatctgatttgaaccttgaccacaatagttgtagccaatgccacgacccttggtaaggcaaacattatagt |
120 |
Q |
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| T |
44489817 |
gaacacgctttaatctttggtatggaggaaatctgatttgaaccttgaccacaatagttgtagccaatgccacgacccttggtaaggcaaacattgtagt |
44489718 |
T |
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| Q |
121 |
taaatatgacaggagggtaattatagtcatatacaacgacagtctctggtttccaaccatctcttcctttcctaaataagtacagttcacatatctggct |
220 |
Q |
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| T |
44489717 |
taaatatgacaggagggtaattatagtcatatacaacgacagtctctggtttccaaccatctcttcctttcctaaataagtacagttcacatatctggct |
44489618 |
T |
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| Q |
221 |
ggtacattctcccattacatcaaatgaaactgtggtgcacttcttgaatgcaccagggtcatccaatcttttaacataaagctgcaattatacatcaaac |
320 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44489617 |
ggtacattctcccattacatcaaatgaaactgtggtgcacctcttgaatgcaccagggtcatccaatcttttaacataaagctgcaattatacatcaaac |
44489518 |
T |
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| Q |
321 |
cagtacattacataatttc |
339 |
Q |
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||||||||||||||||||| |
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| T |
44489517 |
cagtacattacataatttc |
44489499 |
T |
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