View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12659_high_16 (Length: 339)
Name: NF12659_high_16
Description: NF12659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12659_high_16 |
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Alignment Details
Target: chr4 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 7 - 330
Target Start/End: Original strand, 25864391 - 25864714
Alignment:
| Q |
7 |
agattataggaatattttctagattttgagaaataacttacatgagnnnnnnnccaggatagaaatttagaaaatttacatgcattactaaagtgttgtg |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25864391 |
agattataggaatattttctagattttgagaaataacttacatgagaaaaaaaccaggatagaaatttagaaaatttacatgcattactaaagtgttgtg |
25864490 |
T |
|
| Q |
107 |
cacattaatccaaaaggctagcttttcttcgtgtttcatatttcgaggattaatttcttccagccgagaaacaagtgacctgcaaaactataagatatga |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25864491 |
cacattaatccaaaaggctagcttttcttcgtgtttcatatttcgaggattaatttcttccagccgagaaacaagtgacctgcaaaactataagatatga |
25864590 |
T |
|
| Q |
207 |
agttgttccatctcttgtgaatttgaattaaaccacatggtataaaagattaagcaatatacaaaggatcacctaaatctgcgcagcatgtactcaattt |
306 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25864591 |
agttgttccatctcttttgaatttgaattaaaccacatggtataaaagattaagcaatatacaaaggatcacctaaatctgcgcagcatgtactcaattt |
25864690 |
T |
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| Q |
307 |
cttttaatttctctttatctgtgc |
330 |
Q |
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|||||||||||||||||||||||| |
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| T |
25864691 |
cttttaatttctctttatctgtgc |
25864714 |
T |
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