View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12659_high_17 (Length: 334)
Name: NF12659_high_17
Description: NF12659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12659_high_17 |
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Alignment Details
Target: chr5 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 8 - 319
Target Start/End: Original strand, 9961943 - 9962256
Alignment:
| Q |
8 |
aagcatagggaacatcgcataatatacctgcaaaaaatattttcatgtaggacgtaagcccaaaaaatctttgcatgcaagagaaataaaatttcatctt |
107 |
Q |
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|||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9961943 |
aagcatagaaaacatcgcataatatacctgcaaaaaatattctcatgtaggacgtaagcccaaaaaatctttgcatgcaagagaaataaaatttcatctt |
9962042 |
T |
|
| Q |
108 |
taca-ttttttgagttccaaatggttagaagacannnnnnnnngtaaactcggtaattttttgaggggtttgcaaatctgctcatacaaaaacctgcccc |
206 |
Q |
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|||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9962043 |
tacatttttttgagttccaaatggttagaagaca-ttttttttgtaaactcggtaattttttgaggggtttgcaaatctgctcatacaaaaacctgcccc |
9962141 |
T |
|
| Q |
207 |
cacaaataggataaatcttgtttgggtttattagttatggttttaccctttact--nnnnnnnnngttatagttttacccgtcactagaattatctgtct |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |
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| T |
9962142 |
cacaaataggataaatcttgtttgggtttattagttatggttttaccctttactaaaaaaaaaaagttatggttttacccgtcactagaattatctgtct |
9962241 |
T |
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| Q |
305 |
aatttgattgttggt |
319 |
Q |
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||||||||||||||| |
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| T |
9962242 |
aatttgattgttggt |
9962256 |
T |
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