View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12659_high_18 (Length: 307)
Name: NF12659_high_18
Description: NF12659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12659_high_18 |
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Alignment Details
Target: chr5 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 17 - 298
Target Start/End: Original strand, 5193031 - 5193306
Alignment:
| Q |
17 |
aataatatcaaagagttggcgaagaaagttggaaaagaatatataatcgaaccaacatcaacatcatgctaaaagccaaaaacgaaaagcaggaaagtga |
116 |
Q |
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| T |
5193031 |
aataatatcaaagagttggcgaagaaagttggaaaagaatatataatcgaaccaac------atcatgctaaaagccaaaaacgaaaagcacgaaagtga |
5193124 |
T |
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| Q |
117 |
atactcaatgttgctccattgtatatgttttagggtttattcttttgttgattaatttgtttagtagaccaactctattttttatttgtacatgacaata |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5193125 |
atactcaatgttgctccattgtatatgttttagggtttattcttttgttgattaatttgtttagtagaccaactctattttttatttgtacatgacaata |
5193224 |
T |
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| Q |
217 |
tgagtttattatttctgtttttagggagcacccgtggcatcccatcgagcactagaacaaattgttagttgatattctgtgc |
298 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5193225 |
tgagtttattttttctgtttttagggagcacccgtggcatcccatcgagcactagaacaaattgttagttgatattctgtgc |
5193306 |
T |
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