View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12659_high_27 (Length: 253)
Name: NF12659_high_27
Description: NF12659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12659_high_27 |
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Alignment Details
Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 19 - 235
Target Start/End: Original strand, 2457919 - 2458135
Alignment:
| Q |
19 |
gagacttgagtggcacagatgcagtgaggttgtgggtgaatgagaaaaacgactataactataatagtaacacatgtgcttctggtaaagtgtgtggcca |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2457919 |
gagacttgagtggcacagatgcagtgaggttgtgggtgaatgagaaaaacgactataactataatagtaacacatgtgcttctggtaaagtgtgtggcca |
2458018 |
T |
|
| Q |
119 |
ttacactcaggttgtttggagaaacacaaagcgtattggatgtgccaaagtaagatgtaataatggaggcacattcattatttgcaattacgatccacca |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2458019 |
ttacactcaggttgtttggagaaacacaaagcgtattggatgtgccaaagtaagatgtaataatggaggcacattcattatttgcaattacgatccacca |
2458118 |
T |
|
| Q |
219 |
ggcaactatgttggtca |
235 |
Q |
| |
|
||||||||||||||||| |
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| T |
2458119 |
ggcaactatgttggtca |
2458135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 25 - 233
Target Start/End: Complemental strand, 3063496 - 3063285
Alignment:
| Q |
25 |
tgagtggcacagatgcagtgaggttgtgggtgaatgagaaaaacgactataactataatagtaacacatgtgcttctggtaaagtgtgtggccattacac |
124 |
Q |
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|||||||| |||||||||||| ||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
3063496 |
tgagtggctcagatgcagtgaagttgtgggtgaatgagaaagctgactataattataatagtaacacatgtgcttctggtaaagtgtgtggccattatac |
3063397 |
T |
|
| Q |
125 |
tcaggttgtttggagaaacacaaagcgtattggatgtgccaaagtaagatg---taataatggaggcacattcattatttgcaattacgatccaccaggc |
221 |
Q |
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| T |
3063396 |
tcaggttgtttggagaaactcacaacgtgttggatgtgccaaagtgagatgtgataataatagaggaacattcattacatgcaattacgacccaccaggc |
3063297 |
T |
|
| Q |
222 |
aactatgttggt |
233 |
Q |
| |
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|||||||||||| |
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| T |
3063296 |
aactatgttggt |
3063285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 25 - 233
Target Start/End: Original strand, 2462501 - 2462712
Alignment:
| Q |
25 |
tgagtggcacagatgcagtgaggttgtgggtgaatgagaaaaacgactataactataatagtaacacatgtgcttctggtaaagtgtgtggccattacac |
124 |
Q |
| |
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|||||||| |||||||||||| ||||||||||||||||||| |||||| | |||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
2462501 |
tgagtggctcagatgcagtgaagttgtgggtgaatgagaaagctgactatgattataatagtaacacatgtgcttctggtaaagtgtgtggccattatac |
2462600 |
T |
|
| Q |
125 |
tcaggttgtttggagaaacacaaagcgtattggatgtgccaaagtaagatg---taataatggaggcacattcattatttgcaattacgatccaccaggc |
221 |
Q |
| |
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|||||||||||||||||| || | ||| |||||||||||||||| ||||| ||||||| |||| |||||||||| ||||||||||| ||||||||| |
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| T |
2462601 |
ccaggttgtttggagaaactcacaacgtgttggatgtgccaaagtgagatgtgataataatagaggaacattcattacatgcaattacgacccaccaggc |
2462700 |
T |
|
| Q |
222 |
aactatgttggt |
233 |
Q |
| |
|
|||||||||||| |
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| T |
2462701 |
aactatgttggt |
2462712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 19 - 225
Target Start/End: Original strand, 2466543 - 2466752
Alignment:
| Q |
19 |
gagacttgagtggcacagatgcagtgaggttgtgggtgaatgagaaaaacgactataactataatagtaacacatgtgcttctggtaaagtgtgtggcca |
118 |
Q |
| |
|
||||||| |||||| |||||||||||| ||||||||||||||||||| |||||| | ||||||||||||||||||||||||||||||||||||||||| |
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| T |
2466543 |
gagacttaagtggctcagatgcagtgaagttgtgggtgaatgagaaagctgactatgattataatagtaacacatgtgcttctggtaaagtgtgtggcca |
2466642 |
T |
|
| Q |
119 |
ttacactcaggttgtttggagaaacacaaagcgtattggatgtgccaaagtaagatg---taataatggaggcacattcattatttgcaattacgatcca |
215 |
Q |
| |
|
||| || |||||||||||||||||| || | ||| |||||||||||||||| ||||| ||||||| |||| |||||||||| ||||||||||| ||| |
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| T |
2466643 |
ttatacccaggttgtttggagaaactcacaacgtgttggatgtgccaaagtgagatgtgataataatagaggaacattcattacatgcaattacgaccca |
2466742 |
T |
|
| Q |
216 |
ccaggcaact |
225 |
Q |
| |
|
|||||||||| |
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| T |
2466743 |
ccaggcaact |
2466752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 25 - 232
Target Start/End: Original strand, 2469874 - 2470081
Alignment:
| Q |
25 |
tgagtggcacagatgcagtgaggttgtgggtgaatgagaaaaacgactataactataatagtaacacatgtgcttctggtaaagtgtgtggccattacac |
124 |
Q |
| |
|
|||||||| ||| || |||| |||||||||| |||| ||| | ||||| | |||| |||||| |||||||| |||| || |||||||||| ||||| |
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| T |
2469874 |
tgagtggcgtagaagcggtgaagttgtgggtggatgaaaaaccctactatgattatagtagtaattcatgtgctaatggtgaaatgtgtggccactacac |
2469973 |
T |
|
| Q |
125 |
tcaggttgtttggagaaacacaaagcgtattggatgtgccaaagtaagatgtaataatggaggcacattcattatttgcaattacgatccaccaggcaac |
224 |
Q |
| |
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|||||| ||||||||||||||| | || ||||||||||||||||| | ||||||||| ||||| |||||||||| |||||||||||| |||||||||||| |
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| T |
2469974 |
tcaggtggtttggagaaacacacaacggattggatgtgccaaagtgaaatgtaataacggaggaacattcattacttgcaattacgacccaccaggcaac |
2470073 |
T |
|
| Q |
225 |
tatgttgg |
232 |
Q |
| |
|
||| |||| |
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|
| T |
2470074 |
tatattgg |
2470081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 116 - 232
Target Start/End: Original strand, 2474236 - 2474352
Alignment:
| Q |
116 |
ccattacactcaggttgtttggagaaacacaaagcgtattggatgtgccaaagtaagatgtaataatggaggcacattcattatttgcaattacgatcca |
215 |
Q |
| |
|
|||||| |||||||| ||||||||||||||||| |||||||||||||||||||| | |||| |||||||||| |||||||||| |||||||||||| || |
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| T |
2474236 |
ccattatactcaggtggtttggagaaacacaaaacgtattggatgtgccaaagtgaaatgtgataatggaggaacattcattacttgcaattacgacccc |
2474335 |
T |
|
| Q |
216 |
ccaggcaactatgttgg |
232 |
Q |
| |
|
|| ||||||||| |||| |
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|
| T |
2474336 |
cctggcaactatattgg |
2474352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 154 - 217
Target Start/End: Original strand, 2471027 - 2471090
Alignment:
| Q |
154 |
ttggatgtgccaaagtaagatgtaataatggaggcacattcattatttgcaattacgatccacc |
217 |
Q |
| |
|
||||||||| |||||| |||||| ||||||||||||||||||||| ||||||||| || ||||| |
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|
| T |
2471027 |
ttggatgtggcaaagtgagatgtgataatggaggcacattcattacttgcaattatgacccacc |
2471090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 25 - 233
Target Start/End: Original strand, 18015824 - 18016035
Alignment:
| Q |
25 |
tgagtggcacagatgcagtgaggttgtgggtgaatgagaaaaacgactataactataatagtaacacatgtgcttctggtaaagtgtgtggccattacac |
124 |
Q |
| |
|
|||||||| |||||||||||| ||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
18015824 |
tgagtggctcagatgcagtgaagttgtgggtgaatgagaaagctgactataattataatagtaacacatgtgcttctggtaaagtgtgtggccattatac |
18015923 |
T |
|
| Q |
125 |
tcaggttgtttggagaaacacaaagcgtattggatgtgccaaagtaagatg---taataatggaggcacattcattatttgcaattacgatccaccaggc |
221 |
Q |
| |
|
||||||||||||||||||| || | ||| |||||||||||||||| ||||| ||||||| |||| |||||||||| ||||||||||| ||||||||| |
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|
| T |
18015924 |
tcaggttgtttggagaaactcacaacgtgttggatgtgccaaagtgagatgtgataataatagaggaacattcattacatgcaattacgacccaccaggc |
18016023 |
T |
|
| Q |
222 |
aactatgttggt |
233 |
Q |
| |
|
|||||||||||| |
|
|
| T |
18016024 |
aactatgttggt |
18016035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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