View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12659_high_3 (Length: 552)
Name: NF12659_high_3
Description: NF12659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12659_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 357; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 85 - 533
Target Start/End: Original strand, 10011437 - 10011874
Alignment:
| Q |
85 |
ggtgttcattgaatcgatccaaaacatgtcgtaaatttcgttgttgatgaaggttgatgaaagattctggcggagaacatgcagctatggagatggcatt |
184 |
Q |
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| T |
10011437 |
ggtgatcattgaatcgatccaaaacatgtcgtaaatttcgttgttgatgaa----------agattctggcggagaacatgcagctatggagatggcatt |
10011526 |
T |
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| Q |
185 |
gaagagttggatggatactgtgttgttgaaccaagggaagagagcactgtgattcctaaagttagcatgggaagaagagctagaatnnnnnnngttatga |
284 |
Q |
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| T |
10011527 |
gaagagttggatggatactgtgctgttgaaccaagggaagagagcactgtgattcctaaagttagcatgggaagaagagctagaataaaaaaagttatga |
10011626 |
T |
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| Q |
285 |
tagatgctggtttagtgtgtgaacatgcgtgggaaatagatcagctgcatgttttccatatagtacaccaaggtacattattaattgtggtaagaaagca |
384 |
Q |
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| T |
10011627 |
tagatgctggtttagtgtgtgaacatgcgtgggaaatagatcagctgcatgttttccatatagtacaccaaggta-attattaattgtggtaagaaagca |
10011725 |
T |
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| Q |
385 |
atgtctgaaggtctatatgtgagccatggagaatataaatggtttttggatgtattgagtgtttactgactcatgagtagtaacatccatatataggcat |
484 |
Q |
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| T |
10011726 |
acgtctgaaggtctatatgtgagccatggagaatataaatggtttttggatgtattgattgtttactgactcatggttagtaacatccatatataggcat |
10011825 |
T |
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| Q |
485 |
agagtgcaagcaaatagtgtatctaggtgcatggaaaatataccgaaat |
533 |
Q |
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| T |
10011826 |
agagtgcaggcaaatagtgtatctaggtgcatggaaaatataccgaaat |
10011874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 15 - 93
Target Start/End: Original strand, 10011331 - 10011409
Alignment:
| Q |
15 |
tggacatcaaattcatatcagtnnnnnnntagaacaccaccacagagcttggatttggacaacaaagaggggtgttcat |
93 |
Q |
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| T |
10011331 |
tggacatcaaattcatatcagtaaaaaaatagaacaccaccacagagcttggatttggacaacaaagaggggtgttcat |
10011409 |
T |
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