View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12659_high_32 (Length: 238)
Name: NF12659_high_32
Description: NF12659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12659_high_32 |
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Alignment Details
Target: chr1 (Bit Score: 146; Significance: 5e-77; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 57 - 216
Target Start/End: Original strand, 43018997 - 43019153
Alignment:
| Q |
57 |
cagtgaagaaagatagatagatacctttcggagattgcaagagacacacgccaattgtagagagagaaagtgaggagagagaaagtgaagaattaaagca |
156 |
Q |
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| T |
43018997 |
cagtgaagaaagatagatagatacctttcggagattgcaagagacacacgccaattgtagagagagaaagtgaggagagagaaagtgaagaattaaagca |
43019096 |
T |
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| Q |
157 |
aagaatgggatggtggtaggtgaaagagagagataatctgcaataggaaaataacgaaga |
216 |
Q |
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| T |
43019097 |
aagaatggga---tggtaggtgaaagagagagataatctgcaataggaaaataacgaaga |
43019153 |
T |
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