View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12659_high_33 (Length: 236)
Name: NF12659_high_33
Description: NF12659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12659_high_33 |
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Alignment Details
Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 14 - 218
Target Start/End: Original strand, 2457931 - 2458135
Alignment:
| Q |
14 |
gcacagatgcagtgaggttgtgggtgaatgagaaaaacgactataactataatagtaacacatgtgcttctggtaaagtgtgtggccattacactcaggt |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2457931 |
gcacagatgcagtgaggttgtgggtgaatgagaaaaacgactataactataatagtaacacatgtgcttctggtaaagtgtgtggccattacactcaggt |
2458030 |
T |
|
| Q |
114 |
tgtttggagaaacacaaagcgtattggatgtgccaaagtaagatgtaataatggaggcacattcattatttgcaattacgatccaccaggcaactatgtt |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2458031 |
tgtttggagaaacacaaagcgtattggatgtgccaaagtaagatgtaataatggaggcacattcattatttgcaattacgatccaccaggcaactatgtt |
2458130 |
T |
|
| Q |
214 |
ggtca |
218 |
Q |
| |
|
||||| |
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|
| T |
2458131 |
ggtca |
2458135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 17 - 216
Target Start/End: Complemental strand, 3063487 - 3063285
Alignment:
| Q |
17 |
cagatgcagtgaggttgtgggtgaatgagaaaaacgactataactataatagtaacacatgtgcttctggtaaagtgtgtggccattacactcaggttgt |
116 |
Q |
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|||||||||||| ||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
3063487 |
cagatgcagtgaagttgtgggtgaatgagaaagctgactataattataatagtaacacatgtgcttctggtaaagtgtgtggccattatactcaggttgt |
3063388 |
T |
|
| Q |
117 |
ttggagaaacacaaagcgtattggatgtgccaaagtaagatg---taataatggaggcacattcattatttgcaattacgatccaccaggcaactatgtt |
213 |
Q |
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| T |
3063387 |
ttggagaaactcacaacgtgttggatgtgccaaagtgagatgtgataataatagaggaacattcattacatgcaattacgacccaccaggcaactatgtt |
3063288 |
T |
|
| Q |
214 |
ggt |
216 |
Q |
| |
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||| |
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|
| T |
3063287 |
ggt |
3063285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 17 - 216
Target Start/End: Original strand, 2462510 - 2462712
Alignment:
| Q |
17 |
cagatgcagtgaggttgtgggtgaatgagaaaaacgactataactataatagtaacacatgtgcttctggtaaagtgtgtggccattacactcaggttgt |
116 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| |||||| | |||||||||||||||||||||||||||||||||||||||||||| || |||||||| |
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| T |
2462510 |
cagatgcagtgaagttgtgggtgaatgagaaagctgactatgattataatagtaacacatgtgcttctggtaaagtgtgtggccattatacccaggttgt |
2462609 |
T |
|
| Q |
117 |
ttggagaaacacaaagcgtattggatgtgccaaagtaagatg---taataatggaggcacattcattatttgcaattacgatccaccaggcaactatgtt |
213 |
Q |
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|||||||||| || | ||| |||||||||||||||| ||||| ||||||| |||| |||||||||| ||||||||||| |||||||||||||||||| |
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| T |
2462610 |
ttggagaaactcacaacgtgttggatgtgccaaagtgagatgtgataataatagaggaacattcattacatgcaattacgacccaccaggcaactatgtt |
2462709 |
T |
|
| Q |
214 |
ggt |
216 |
Q |
| |
|
||| |
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|
| T |
2462710 |
ggt |
2462712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 17 - 208
Target Start/End: Original strand, 2466558 - 2466752
Alignment:
| Q |
17 |
cagatgcagtgaggttgtgggtgaatgagaaaaacgactataactataatagtaacacatgtgcttctggtaaagtgtgtggccattacactcaggttgt |
116 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| |||||| | |||||||||||||||||||||||||||||||||||||||||||| || |||||||| |
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| T |
2466558 |
cagatgcagtgaagttgtgggtgaatgagaaagctgactatgattataatagtaacacatgtgcttctggtaaagtgtgtggccattatacccaggttgt |
2466657 |
T |
|
| Q |
117 |
ttggagaaacacaaagcgtattggatgtgccaaagtaagatg---taataatggaggcacattcattatttgcaattacgatccaccaggcaact |
208 |
Q |
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|||||||||| || | ||| |||||||||||||||| ||||| ||||||| |||| |||||||||| ||||||||||| ||||||||||||| |
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| T |
2466658 |
ttggagaaactcacaacgtgttggatgtgccaaagtgagatgtgataataatagaggaacattcattacatgcaattacgacccaccaggcaact |
2466752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 25 - 215
Target Start/End: Original strand, 2469891 - 2470081
Alignment:
| Q |
25 |
gtgaggttgtgggtgaatgagaaaaacgactataactataatagtaacacatgtgcttctggtaaagtgtgtggccattacactcaggttgtttggagaa |
124 |
Q |
| |
|
|||| |||||||||| |||| ||| | ||||| | |||| |||||| |||||||| |||| || |||||||||| ||||||||||| |||||||||| |
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| T |
2469891 |
gtgaagttgtgggtggatgaaaaaccctactatgattatagtagtaattcatgtgctaatggtgaaatgtgtggccactacactcaggtggtttggagaa |
2469990 |
T |
|
| Q |
125 |
acacaaagcgtattggatgtgccaaagtaagatgtaataatggaggcacattcattatttgcaattacgatccaccaggcaactatgttgg |
215 |
Q |
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||||| | || ||||||||||||||||| | ||||||||| ||||| |||||||||| |||||||||||| ||||||||||||||| |||| |
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| T |
2469991 |
acacacaacggattggatgtgccaaagtgaaatgtaataacggaggaacattcattacttgcaattacgacccaccaggcaactatattgg |
2470081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 99 - 215
Target Start/End: Original strand, 2474236 - 2474352
Alignment:
| Q |
99 |
ccattacactcaggttgtttggagaaacacaaagcgtattggatgtgccaaagtaagatgtaataatggaggcacattcattatttgcaattacgatcca |
198 |
Q |
| |
|
|||||| |||||||| ||||||||||||||||| |||||||||||||||||||| | |||| |||||||||| |||||||||| |||||||||||| || |
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| T |
2474236 |
ccattatactcaggtggtttggagaaacacaaaacgtattggatgtgccaaagtgaaatgtgataatggaggaacattcattacttgcaattacgacccc |
2474335 |
T |
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| Q |
199 |
ccaggcaactatgttgg |
215 |
Q |
| |
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|| ||||||||| |||| |
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| T |
2474336 |
cctggcaactatattgg |
2474352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 137 - 200
Target Start/End: Original strand, 2471027 - 2471090
Alignment:
| Q |
137 |
ttggatgtgccaaagtaagatgtaataatggaggcacattcattatttgcaattacgatccacc |
200 |
Q |
| |
|
||||||||| |||||| |||||| ||||||||||||||||||||| ||||||||| || ||||| |
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|
| T |
2471027 |
ttggatgtggcaaagtgagatgtgataatggaggcacattcattacttgcaattatgacccacc |
2471090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 17 - 216
Target Start/End: Original strand, 18015833 - 18016035
Alignment:
| Q |
17 |
cagatgcagtgaggttgtgggtgaatgagaaaaacgactataactataatagtaacacatgtgcttctggtaaagtgtgtggccattacactcaggttgt |
116 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
18015833 |
cagatgcagtgaagttgtgggtgaatgagaaagctgactataattataatagtaacacatgtgcttctggtaaagtgtgtggccattatactcaggttgt |
18015932 |
T |
|
| Q |
117 |
ttggagaaacacaaagcgtattggatgtgccaaagtaagatg---taataatggaggcacattcattatttgcaattacgatccaccaggcaactatgtt |
213 |
Q |
| |
|
|||||||||| || | ||| |||||||||||||||| ||||| ||||||| |||| |||||||||| ||||||||||| |||||||||||||||||| |
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|
| T |
18015933 |
ttggagaaactcacaacgtgttggatgtgccaaagtgagatgtgataataatagaggaacattcattacatgcaattacgacccaccaggcaactatgtt |
18016032 |
T |
|
| Q |
214 |
ggt |
216 |
Q |
| |
|
||| |
|
|
| T |
18016033 |
ggt |
18016035 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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