View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12659_high_34 (Length: 236)
Name: NF12659_high_34
Description: NF12659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12659_high_34 |
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Alignment Details
Target: chr5 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 14003028 - 14002801
Alignment:
| Q |
1 |
ttaaactcttctcccaatcaatcttcttaacttctttcaaacattttttgggtctaaaatttggtgtaaaagcacaaccctttttatttgcttctttgtt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14003028 |
ttaaactcttctcccaatcaatcttcttaacttctttcaaacattttttgggtctaaaatttggtgtaaaagcacaaccctttttatttgcttctttgtt |
14002929 |
T |
|
| Q |
101 |
aacctccttgatttcaattttagttcctccttccattctcatccttataatcacctcagaaagtgctctaattttattatctactttaacaaatgctgca |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
14002928 |
aacctccttgatttcaattttagttcctccttccattctcatccttataatcacctcagaaagtgctctaattttgttatctactttaacaaatgctgca |
14002829 |
T |
|
| Q |
201 |
tcttttgcatctctctcctttctctgct |
228 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
14002828 |
tcttttgcatctctctcctttctctgct |
14002801 |
T |
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