View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12659_high_36 (Length: 228)
Name: NF12659_high_36
Description: NF12659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12659_high_36 |
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Alignment Details
Target: chr6 (Bit Score: 159; Significance: 8e-85; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 30541067 - 30541288
Alignment:
| Q |
1 |
tcatggagatcggaacaatttggcaccattaactacttttctataaacttaattggcctagatagataaacgtagtatgt--atagaaaaaggtaatctg |
98 |
Q |
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| T |
30541067 |
tcatggagatcggagcaatttggcaccattgactacttttctataaactta-ttggcctagata----aaagcagtatgtgtatagaaaaaggtaatctg |
30541161 |
T |
|
| Q |
99 |
attttaaaaatttagaactgcatttgagcttaaagaaatgttgacttggtttgattaccaacccaggcacttataacatcatgcaaaaataaaataatgc |
198 |
Q |
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| T |
30541162 |
attttaaaaatttagaactgcatttgagcttaatgaaatgttggcttggtttgattaccaacccaggcccttataacatcatgcaaaaattaaataatgc |
30541261 |
T |
|
| Q |
199 |
tcctcaggtgtgttttgcaagttggac |
225 |
Q |
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||||||||||||||||||||||||||| |
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| T |
30541262 |
tcctcaggtgtgttttgcaagttggac |
30541288 |
T |
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