View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12659_high_4 (Length: 514)
Name: NF12659_high_4
Description: NF12659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12659_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 410; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 14 - 499
Target Start/End: Original strand, 1984357 - 1984842
Alignment:
| Q |
14 |
cctttttctcttagaatctttgcatcgttctcggaatctataattccattcatcaattccgtgtaacgagttataaccaaaggtccggatccaaccgatg |
113 |
Q |
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| T |
1984357 |
cctttttctcttagaatctttgcatcgttctcggaatctataattccattcatcaattccgtgtaacgagttataaccaaaggtcccgatccaaccgatg |
1984456 |
T |
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| Q |
114 |
attcgtatgcaaccaagtttctaaagaaaacttcggtgttcacatccaaactaattgtgggaaggtgaaaagtgtttgttttagcatcaaaattaatgct |
213 |
Q |
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| T |
1984457 |
attcgtatgcaaccaagtttcgaagaaaaacttcggtgttgacatccaaactaattgtgggaaggtgaaaagtgtttgttttagcatcaaaactaatgct |
1984556 |
T |
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| Q |
214 |
tgatatgcttccatttgtaggtaagaaattaacccccgcagtcacaagttgttcaacagaaggaatagtgatttcctccaccaagggtgttttgttcttt |
313 |
Q |
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| T |
1984557 |
tgatatgcttccttttgcaggtaagaaattaacccctgcagtcacaagttgttcaacagaaggaatagcgatttcctccaccaagggtgttttgttcttt |
1984656 |
T |
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| Q |
314 |
agagtacttgagttttcatcgtttggtttttcctcttctttcttttgagagtttaacaagtgttcaataggttgttttacaagtttgatacctggaaggt |
413 |
Q |
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| T |
1984657 |
agagtactagagttttcatcttttggtttttcctcttctttcttttgagtgtttaaaaagtattcaataggttgttttacaagtttgattcctggaaggt |
1984756 |
T |
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| Q |
414 |
ttgttatgttttcccaaggtaattttttaaggacttttagaggtgcagatataagtacctttttaattccatgcaaaggccctttg |
499 |
Q |
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| T |
1984757 |
tggttatgttttcccaaggtaactttttaaggacttttagaggtgcagatataagtacctttttgattccatgcaaaggccctttg |
1984842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 14 - 302
Target Start/End: Original strand, 1977436 - 1977724
Alignment:
| Q |
14 |
cctttttctcttagaatctttgcatcgttctcggaatctataattccattcatcaattccgtgtaacgagttataaccaaaggtccggatccaaccgatg |
113 |
Q |
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| T |
1977436 |
cctttttctcttagaatctttgcatctttctcggagtctatgattccattcatcaattctgtgtaacgagttataaccaaaggtcccgatccaaccgatg |
1977535 |
T |
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| Q |
114 |
attcgtatgcaaccaagtttctaaagaaaacttcggtgttcacatccaaactaattgtgggaaggtgaaaagtgtttgttttagcatcaaaattaatgct |
213 |
Q |
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| T |
1977536 |
attcatatgcaaccaagtttcttagaaaaacttcggtgttaacatccaatctaatcatgggaaggtgaaaagtgtttgttttagcatcaaaactaatgct |
1977635 |
T |
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| Q |
214 |
tgatatgcttccatttgtaggtaagaaattaacccccgcagtcacaagttgttcaacagaaggaatagtgatttcctccaccaagggtg |
302 |
Q |
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| T |
1977636 |
tgatatgcttccatttgtaggtaagaaattaactcctgcaagcacaagttgctcaacagaaggaatagcgatttcatccatcaaaggtg |
1977724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 14 - 288
Target Start/End: Complemental strand, 1948970 - 1948696
Alignment:
| Q |
14 |
cctttttctcttagaatctttgcatcgttctcggaatctataattccattcatcaattccgtgtaacgagttataaccaaaggtccggatccaaccgatg |
113 |
Q |
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|||||||||||||||||||| ||||| | || || ||||||||||||||||||||||| ||||| || ||||||||||| ||||| ||||||||||||| |
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| T |
1948970 |
cctttttctcttagaatcttcgcatcatcttccgagtctataattccattcatcaattcggtgtaccgtgttataaccaatggtcccgatccaaccgatg |
1948871 |
T |
|
| Q |
114 |
attcgtatgcaaccaagtttctaaagaaaacttcggtgttcacatccaaactaattgtgggaaggtgaaaagtgtttgttttagcatcaaaattaatgct |
213 |
Q |
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| T |
1948870 |
attcatacgcaaccaagtttcttagaaaaacttcggtattaacatccaaaccgataataggaaggtaaaaagttcttgtttttgcatcaaaactaatact |
1948771 |
T |
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| Q |
214 |
tgatatgcttccatttgtaggtaagaaattaacccccgcagtcacaagttgttcaacagaaggaatagtgatttc |
288 |
Q |
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| T |
1948770 |
tgatatgctcccattagtaggagaaaaattcactcctgatttcacaagttctttaacagaaggaatagtgatttc |
1948696 |
T |
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