View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12659_high_6 (Length: 456)
Name: NF12659_high_6
Description: NF12659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12659_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 17 - 450
Target Start/End: Original strand, 36504201 - 36504656
Alignment:
| Q |
17 |
cataaaggcactttactctgaccatctttttagtttaggaaggggtaggttgaattcttaatcattttcattttcttgcttgtcttatatttttgttgga |
116 |
Q |
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| T |
36504201 |
cataaaggcactttactctgaccatctttttagtttaggaaggggtaggttgaattcttaatcattttcattttcttgcttgtcttatatttttgtttga |
36504300 |
T |
|
| Q |
117 |
actatttttatatttatcttaatgtcattcatgttccatttc-------------caaattttgcctctttccatgtcaatagtctaattacgaatatgg |
203 |
Q |
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| T |
36504301 |
actatttttatatttatcttaatgtcattcatgttcctttttattggagcggtaacaaattttgcctctttccatgtcaatagtctaattacgaatatgg |
36504400 |
T |
|
| Q |
204 |
atcaagaatatgttaagcagaggcctataatatgctagtaaaatataaaatatgtataccatttgatcttgtatttgtattttcagttttccacaactat |
303 |
Q |
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| T |
36504401 |
atcaagaatatgttaagcagaggcctataatatgctagtaaaatataaaatatgtataccatttgatctagtatttgtattttcagttttccacaactat |
36504500 |
T |
|
| Q |
304 |
gccagttcatctaagtaaagatcttcaccattcaaaatagttttatgtgtgtatagagtatagac--------agaacacatgactaacactaaatattt |
395 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| |
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| T |
36504501 |
gccagttcatctaagtaaagatcttcaccattcaaaatagttttatgtgtgtatagagcatagacacagttatagaacacatgactaacactaaatattt |
36504600 |
T |
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| Q |
396 |
atgtgtc-ttatatacataaagttatagtgacggagagtatctcaattcatctctc |
450 |
Q |
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| T |
36504601 |
atgtgtctttatatacataaagttatagtgacggagagtatctcaattcatctctc |
36504656 |
T |
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