View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12659_low_10 (Length: 442)
Name: NF12659_low_10
Description: NF12659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12659_low_10 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 22 - 442
Target Start/End: Complemental strand, 3725418 - 3724999
Alignment:
| Q |
22 |
aggattttcgcttcccttcaaattattgaacataattagaaagattcgtaaaaatgtggatattaatcatgaagttttcaagtgaataaatacattatta |
121 |
Q |
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| T |
3725418 |
aggattttcgcttcccttcaaattattgaacataattagaaagattcgtaaaaatgtggatattaatcatgaagttttcaagtgaataaatacattatta |
3725319 |
T |
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| Q |
122 |
tgagcttaattgaatgaaagnnnnnnnncttcatataccacaaacttttgttcatctcaccttgattttggtcctgcgagttattcacttgtaaagcagg |
221 |
Q |
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| T |
3725318 |
tgagcttaattgaatgaaagtttttttt-ttcatataccacaaacttttgttcatctcaccttgattttggtcctgcgagttattcacttgtaaagcagg |
3725220 |
T |
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| Q |
222 |
atttctatatctaatgttgattatatcattatctgctattataatctgaaatcgaaactaatttccctctgatttcttctgtatctattacattgatatc |
321 |
Q |
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| T |
3725219 |
atttctatatctagtgttgattatatcattatatgctattataatttgaaatcgaaactagtttccctctgatttcttctatatctattacattgatatc |
3725120 |
T |
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| Q |
322 |
tcaaaagagttaaaatttataatacgtgtaatgttaaccttaaattctgaatcaggatgtggtcgatgtctgaatatagagaaatttcaaggacctttag |
421 |
Q |
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| T |
3725119 |
tcaaaagagttaaaatttataatacgtttaatgttaaccttaaattctgaatcaggatgtggtcgatgtctgaatatagagaaatttcaaggacctttag |
3725020 |
T |
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| Q |
422 |
agagatgaacccaataaaatt |
442 |
Q |
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| T |
3725019 |
agagatgaaaccaataaaatt |
3724999 |
T |
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