View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12659_low_13 (Length: 438)

Name: NF12659_low_13
Description: NF12659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12659_low_13
NF12659_low_13
[»] chr3 (6 HSPs)
chr3 (20-427)||(49425870-49426280)
chr3 (222-427)||(43363144-43363344)
chr3 (237-427)||(49423713-49423904)
chr3 (165-246)||(49416720-49416802)
chr3 (64-158)||(43362598-43362692)
chr3 (310-365)||(17640994-17641049)


Alignment Details
Target: chr3 (Bit Score: 342; Significance: 0; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 20 - 427
Target Start/End: Complemental strand, 49426280 - 49425870
Alignment:
Q  20 aagtttaagaaaaattatcctttaactttagaccnnnnnnnnnnacttgttcattacttcaacaaaatctatgttatccannnnnnn---gttagttgtt 116  Q
    ||||||||||||||||||||||||||||||||||          ||||||||||||||||||||||||||||||||||||          |||||||||     
T  49426280 aagtttaagaaaaattatcctttaactttagaccttttttttttacttgttcattacttcaacaaaatctatgttatccattttttttttgttagttgta 49426181  T
Q  117 tgctaaattctgattccatgaatgaccacatgataggagagtaaaatgtgtgagaactgagaactgacttctaaaatgtctgataagttttgaaaaatac 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49426180 tgctaaattctgattccatgaatgaccacatgataggagagtaaaatgtgtgagaactgagaactgacttctaaaatgtctgataagttttgaaaaatac 49426081  T
Q  217 tgctatgagaatgagaagggagcttttgaactgtcttaatgaatcatttggggaaacttgttcagcttttcaattcaatagttcaacctctagtttaaac 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49426080 tgctatgagaatgagaagggagcttttgaactgtcttaatgaatcatttggggaaacttgttcagcttttcaattcaatagttcaacctctagtttaaac 49425981  T
Q  317 taaatgtatgagatggttcatagtttcaactttcaagacattagggatagcatttcttacgctcttaagatttcgccaattcatattggcaatgtcatgt 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49425980 taaatgtatgagatggttcatagtttcaactttcaagacattagggatagcatttcttacgctcttaagatttcgccaattcatattggcaatgtcatgt 49425881  T
Q  417 tacaacttcat 427  Q
    |||||||||||    
T  49425880 tacaacttcat 49425870  T

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Target: chr3; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 222 - 427
Target Start/End: Original strand, 43363144 - 43363344
Alignment:
Q  222 tgagaatgagaagggagcttttgaactgtcttaatgaatcatttggggaaacttgttcagcttttcaattcaatagttcaacctctagtttaaactaaat 321  Q
    |||||||||||||| || ||||||| ||||||||||| |||||||||||| |||||| ||  ||||| |||||| |||||||  | ||||||||||  ||    
T  43363144 tgagaatgagaaggaagtttttgaattgtcttaatgagtcatttggggaagcttgtttagtgtttcacttcaattgttcaacaaccagtttaaact--at 43363241  T
Q  322 gtatgagatggttcatagtttcaactttcaagacattagggatagcatttcttacgctcttaagatttcgccaattcatattggcaatgtcatgttacaa 421  Q
    ||| |||||| || |||| ||||||||||||||||| ||||||| ||||| ||| ||||||||| |||| ||| | || ||| ||||  |||||||||||    
T  43363242 gtaggagatgattaatagattcaactttcaagacataagggataacattt-ttatgctcttaagctttcaccattgcacatttgcaa--tcatgttacaa 43363338  T
Q  422 cttcat 427  Q
    ||||||    
T  43363339 cttcat 43363344  T

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Target: chr3; HSP #3
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 237 - 427
Target Start/End: Complemental strand, 49423904 - 49423713
Alignment:
Q  237 agcttttgaactgtcttaatgaatcatttggggaaacttgttcagcttttcaattcaatagttcaacctctagtttaaactaaatgtatgagatggttca 336  Q
    |||||||||||||||||||  |  ||||||||||| |||||||||  ||| |||||||| |||||||||  | |||||||| || ||  ||||||||| |    
T  49423904 agcttttgaactgtcttaacaagccatttggggaagcttgttcagtgttttaattcaattgttcaaccttcattttaaacttaaagttggagatggttga 49423805  T
Q  337 tagtttcaactttcaagacattagggatagcatttcttacgctcttaagatttc-gccaattcatattggcaatgtcatgttacaacttcat 427  Q
    ||| ||||||||||||||||||||||||| ||||| ||| |||| ||  ||||| |||| | || ||| ||||| ||| |||||||||||||    
T  49423804 tagattcaactttcaagacattagggataacattttttatgctcgtacaatttcggccattacagatttgcaatatcacgttacaacttcat 49423713  T

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Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 165 - 246
Target Start/End: Original strand, 49416720 - 49416802
Alignment:
Q  165 tgtgagaactgagaactgacttctaaaatgtctgataa-gttttgaaaaatactgctatgagaatgagaagggagcttttgaa 246  Q
    ||||||||||||| ||| |||||||| | |||| |||| ||||| ||||||||||| |||||||||| |||||||||||||||    
T  49416720 tgtgagaactgagtactcacttctaataagtctaataaagttttaaaaaatactgcaatgagaatgacaagggagcttttgaa 49416802  T

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Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 64 - 158
Target Start/End: Original strand, 43362598 - 43362692
Alignment:
Q  64 acttgttcattacttcaacaaaatctatgttatccannnnnnngttagttgtttgctaaattctgattccatgaatgaccacatgataggagagt 158  Q
    |||||||||| |||||||| ||||||||||||||||       |||||||||  |||||||| |||||| ||| |||||| |||| |||||||||    
T  43362598 acttgttcatgacttcaactaaatctatgttatccattttttagttagttgtgcgctaaattatgattcaatgcatgaccgcatggtaggagagt 43362692  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 310 - 365
Target Start/End: Complemental strand, 17641049 - 17640994
Alignment:
Q  310 tttaaactaaatgtatgagatggttcatagtttcaactttcaagacattagggata 365  Q
    ||||||||||||||| || |||||| |||| ||||||||||||||  |||||||||    
T  17641049 tttaaactaaatgtaggacatggttgatagattcaactttcaagaatttagggata 17640994  T

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