View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12659_low_17 (Length: 380)
Name: NF12659_low_17
Description: NF12659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12659_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 90; Significance: 2e-43; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 79 - 180
Target Start/End: Original strand, 11676667 - 11676768
Alignment:
| Q |
79 |
catcagcctcgtcttgatctatgtgtttctattcttgtaatacaatgatttgtgttcttgtgttgctttccttgtagacattggaggttataatcatgtg |
178 |
Q |
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| T |
11676667 |
catcagcctcgtcttgatctatgtgtttttattcttgtaatacaatgatttgtgttcttgtgttgctttcctcgtagacattggaggttataataatgtg |
11676766 |
T |
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| Q |
179 |
ta |
180 |
Q |
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|| |
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| T |
11676767 |
ta |
11676768 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 79 - 148
Target Start/End: Original strand, 11659768 - 11659837
Alignment:
| Q |
79 |
catcagcctcgtcttgatctatgtgtttctattcttgtaatacaatgatttgtgttcttgtgttgctttc |
148 |
Q |
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| T |
11659768 |
catcagcctcgtcttgatctatgtgtttctattcttataatacaatgatttgtgttcttgtgttgctttc |
11659837 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 79 - 148
Target Start/End: Original strand, 11668937 - 11669006
Alignment:
| Q |
79 |
catcagcctcgtcttgatctatgtgtttctattcttgtaatacaatgatttgtgttcttgtgttgctttc |
148 |
Q |
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| T |
11668937 |
catcaacctcgtcttgatctatgtgtttatattcttataatacaatgatttgtgttcttgtgttgctttc |
11669006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 325 - 367
Target Start/End: Original strand, 11676906 - 11676948
Alignment:
| Q |
325 |
ttgatttatgatgagatatttgcaaaattggttgtaatcagtg |
367 |
Q |
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| T |
11676906 |
ttgaattatgatgagatatttgcaaaattggttgtaatcagtg |
11676948 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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