View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12659_low_19 (Length: 362)
Name: NF12659_low_19
Description: NF12659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12659_low_19 |
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| [»] scaffold0643 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 13 - 307
Target Start/End: Complemental strand, 17053807 - 17053512
Alignment:
| Q |
13 |
gaaactgattttgagattttttgatgggatgaaagattgaaagaaggagtggggtgttatggcgcggcttgtgaaagtggagagaaaattttggagnnnn |
112 |
Q |
| |
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|||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17053807 |
gaaactgattttgaaattttttgatgggatgaaatattgaaagaaggagtggggtgttatggcgcggcttgtgaaagtggagagaaaattttggagaaaa |
17053708 |
T |
|
| Q |
113 |
nnnngtgtgggaatgaaatgtg-attacgcgccttctgtatttttgtccagcatgtcaaagttatccacggtcaaaacaaaaccgtgagagtcataatgt |
211 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
17053707 |
aaaagtgtgggaatgaaatgtgtattacgcgccttctgtatttttgtccagcatgtcaaagttatccacggtcaaaacaaaaccgtgagagtcataatgt |
17053608 |
T |
|
| Q |
212 |
ggcaagtggacccttctatcattttttgttgttatccacacctaaggaaaaatcgtggcaattatagtgtggccaatagccgattttttggtagtg |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
17053607 |
ggcaagtggacccttctatcattttttgttgttatccacacctaaggaaaaatcgtggcaattatagtgtggccaatagccgtttttttggtagtg |
17053512 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 9 - 307
Target Start/End: Original strand, 9143304 - 9143603
Alignment:
| Q |
9 |
agatgaaactgattttgagattttttgatgggatgaaagattgaaagaaggagtggggtgttatggcgcggcttgtgaaagtggagagaaaattttggag |
108 |
Q |
| |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
9143304 |
agatgaaactgattttgggattttttgatgggatgaaagattgaaagaaggagtggggtgttatggcgcgacttgtgaaagtggagagaaaattttggag |
9143403 |
T |
|
| Q |
109 |
nnnnnnnngtgtgggaatgaaatgtg-attacgcgccttctgtatttttgtccagcatgtcaaagttatccacggtcaaaacaaaaccgtgagagtcata |
207 |
Q |
| |
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|||||||||||||||||| |||||||||||||| ||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |
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| T |
9143404 |
aaaaaaaagtgtgggaatgaaatgtgtattacgcgccttctatatttttgtccagtatatcaaagttatccacggtcaaaacaaaaccgtgagagtcata |
9143503 |
T |
|
| Q |
208 |
atgtggcaagtggacccttctatcattttttgttgttatccacacctaaggaaaaatcgtggcaattatagtgtggccaatagccgattttttggtagtg |
307 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| |
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| T |
9143504 |
atgtggcaagtggacccttctatcattttttgttgttatccacgcctaaggaaaaatcgtggcaattttagtgtggccaatagccgtttttttggtagtg |
9143603 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0643 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: scaffold0643
Description:
Target: scaffold0643; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 9 - 308
Target Start/End: Complemental strand, 6922 - 6618
Alignment:
| Q |
9 |
agatgaaactgattttgagattttttgatgggatgaaagattgaaagaaggagtggggtgttatggcgcggcttgtgaaagtggagagaaaattttggag |
108 |
Q |
| |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |
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| T |
6922 |
agatgaaactgattttgggattttttgatgggatgaaagattgaaagaaggagtggggtgttatcgcgcggcttgtgaaattggagagaaaattttggag |
6823 |
T |
|
| Q |
109 |
nnnnnnnn-gtgtgggaatgaaatgtg-attacgcgccttctgtatttttgtccagcatgtcaaagttatccacggtcaaaacaaaaccgtgagagtcat |
206 |
Q |
| |
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| |||||||||||||||| ||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
6822 |
aaaataaaagggtgggaatgaaatgtgtattacacgccttctatatttttgtccagcatgtcaaagatatccacggtcaaaacaaaaccgtgagagtcat |
6723 |
T |
|
| Q |
207 |
aatgtggc---aagtggacccttctatcattttttgttgttatccacacctaaggaaaaatcgtggcaattatagtgtggccaatagccgattttttggt |
303 |
Q |
| |
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|||||||| ||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| ||||||||| |
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| T |
6722 |
aatgtggccgcaagtggacccttctatcatattttgttgttatccacgcctaaggaaaaatcgtggcaattttagtgtggccaatagccgtttttttggt |
6623 |
T |
|
| Q |
304 |
agtgt |
308 |
Q |
| |
|
||||| |
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|
| T |
6622 |
agtgt |
6618 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 201; Significance: 1e-109; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 9 - 308
Target Start/End: Original strand, 12777506 - 12777806
Alignment:
| Q |
9 |
agatgaaactgattttgagattttttgatgggatgaaagattgaaagaaggagtggggtgttatggcgcggcttgtgaaagtggagagaaaattttggag |
108 |
Q |
| |
|
||||||||||||||||| | |||| |||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |||| |||||||| |
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|
| T |
12777506 |
agatgaaactgattttggggttttatgatgggatgaaagattgaaagaaggagtgggatgttctggcgcggcttgtgaaagtggagtgaaatttttggag |
12777605 |
T |
|
| Q |
109 |
nnnnnnnngtgtgggaatgaaatgtg-attacgcgccttctgtatttttgtccagcatgtcaaagttatccacggtcaaaacaaaaccgtgagagtcata |
207 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| | |||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| |
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|
| T |
12777606 |
aaaaataagtgtgggaatgaaatgtgtattacgcgccttctatttttttgtccagcatgtcaaagttatcaacggtcaaaacaaaaccgtgagagttata |
12777705 |
T |
|
| Q |
208 |
atgtggcaagtggacccttctatcattttttgttgttatccacacctaaggaaaaatcgtggcaattatagtgtggccaatagccgattttttggtagtg |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||||||| ||||||||||||| |
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|
| T |
12777706 |
gtgtggcaagtggacccttctatcattttttgttgttatccacgcctaaggaaaaatcatggcaattttagtgtggccaatagccatttttttggtagtg |
12777805 |
T |
|
| Q |
308 |
t |
308 |
Q |
| |
|
| |
|
|
| T |
12777806 |
t |
12777806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 9 - 307
Target Start/End: Original strand, 30074259 - 30074560
Alignment:
| Q |
9 |
agatgaaactgattttgagattttttgatgggatgaaagattgaaagaaggagtggggtgttatggcgcggcttgtgaaagtggagagaaaattttggag |
108 |
Q |
| |
|
||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||| |||||||| |
|
|
| T |
30074259 |
agatgaaactgattttggggttttttgatgggatgaaagattgaaagaaggagtggggtgttctggcgtggcttgtgaaagtggagtgaaatttttggag |
30074358 |
T |
|
| Q |
109 |
nnnnnnnngtgtgggaatgaaatgtg-attacgcgccttctgtat-ttttgtccagcatgtcaaagttatccacggtcaaaacaaaaccgtgagagtcat |
206 |
Q |
| |
|
|||||||||||||||||| ||||||| |||||| | | |||| ||||||||||||||||||||||| |||||||||||||||||||||| || |
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|
| T |
30074359 |
aaaaaaaagtgtgggaatgaaatgtgtattacgcaccttctatttcttttttccagcatgtcaaagttatccacagtcaaaacaaaaccgtgagagttat |
30074458 |
T |
|
| Q |
207 |
aatgtggcaagtggacccttctatca-ttttttgttgttatccacacctaaggaaaaatcgtggcaattatagtgtggccaatagccgattttttggtag |
305 |
Q |
| |
|
| |||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| ||||||||||| |
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|
| T |
30074459 |
agtgtggcaagtggacccttctatcatttttttgttgttatccacgcctaaggaaaaatcgtggcaattttagtgtggccaatagccgtttttttggtag |
30074558 |
T |
|
| Q |
306 |
tg |
307 |
Q |
| |
|
|| |
|
|
| T |
30074559 |
tg |
30074560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 9 - 307
Target Start/End: Original strand, 30015162 - 30015463
Alignment:
| Q |
9 |
agatgaaactgattttgagattttttgatgggatgaaagattgaaagaaggagtggggtgttatggcgcggcttgtgaaagtggagagaaaattttggag |
108 |
Q |
| |
|
||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| |||| |||||||| |
|
|
| T |
30015162 |
agatgaaactgattttggggttttttgatgggatgaaagattgaaagaaggagtggggtgttctggcacggcttgtgaaagtggagtgaaatttttggag |
30015261 |
T |
|
| Q |
109 |
nnnnnnnngtgtgggaatgaaatgtg-attacgcgccttctgtat-ttttgtccagcatgtcaaagttatccacggtcaaaacaaaaccgtgagagtcat |
206 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| | | |||| | |||||||||||||||||||||||||||||||| ||||||||||| || |
|
|
| T |
30015262 |
aaaaaaaagtgtgggaatgaaatgtgtattacgcgccttctatttctttttttcagcatgtcaaagttatccacggtcaaaacaataccgtgagagttat |
30015361 |
T |
|
| Q |
207 |
aatgtggcaagtggacccttctatca-ttttttgttgttatccacacctaaggaaaaatcgtggcaattatagtgtggccaatagccgattttttggtag |
305 |
Q |
| |
|
| |||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| |||||||| || |
|
|
| T |
30015362 |
agtgtggcaagtggacccttctatcatttttttgttgttatccacgcctaaggaaaaatcgtggcaattttagtgtggccaatagccgtttttttggcag |
30015461 |
T |
|
| Q |
306 |
tg |
307 |
Q |
| |
|
|| |
|
|
| T |
30015462 |
tg |
30015463 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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